TCONS_00036568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036568
Unique NameTCONS_00036568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036568 ID=TCONS_00036568|Name=TCONS_00036568|organism=Clytia hemisphaerica|type=transcript|length=685bp
CCATTGATAAGAAACCCATATGTGGAGTTAAAGGTCCATCTTCTTTAATG
GtgttgaaaagttttgatataATCCGTGGTGTTGGCATAGATTATATGCA
TTGTGTCCTGCTTGGCGTAACAAAATTAGTTATGTCCCTTTGGCTCGAAC
CTTCTCACAAAAACGAAACCTTCTCAATCCACGACCATCTTGCTTTAACC
GAATATCGTCTTCTATCATTAAAACCCCCAAACCACATTTCACGAGCGCC
ACGATCTATTAAATCAAATCTAGGATATTGGAAAACGTCCGAATTTCGTT
CGTTCCTGTCATGTATAAGCTCCTACCCCCTCGTCAATCTGAACACTTTT
ATCTGCTCATTCACGCCATCCATTTACTCCTGAAAACAAATATTACGCTT
GATGACATCAAAGCCTCTGAACGCTTTTTGTCCGCATTTGTCTACTACTT
CGATAAACTCTACCCTATCCGCCATATTACGATCAATATTCATTCACTAC
TGCACTTACCGTCTACCGTTTTAGAGCTCGGCCCTCTGTACCTTTATAGT
TTATTCCATTTTGAGGATAAGAATGGCTATATCATGAAATTGATCCATGG
AACGCAAAATATACCATTGCAGTTGGCATCCGCTGTTTCCGCTTCAAACT
TCATTCCCATTCTAACGGAAAAATGTATTAAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00036568-protein

>TCONS_00036568-protein ID=TCONS_00036568-protein|Name=TCONS_00036568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MYKLLPPRQSEHFYLLIHAIHLLLKTNITLDDIKASERFLSAFVYYFDKL
YPIRHITINIHSLLHLPSTVLELGPLYLYSLFHFEDKNGYIMKLIHGTQN
IPLQLASAVSASNFIPILTEKCIKK
Run BLAST on NCBI

transcript from alignment at sc0001480:39570..40254

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036568 ID=TCONS_00036568|Name=TCONS_00036568|organism=Clytia hemisphaerica|type=transcript|length=685bp|location=Sequence derived from alignment at sc0001480:39570..40254 (Clytia hemisphaerica)
TTTTTTAATACATTTTTCCGTTAGAATGGGAATGAAGTTTGAAGCGGAAA
CAGCGGATGCCAACTGCAATGGTATATTTTGCGTTCCATGGATCAATTTC
ATGATATAGCCATTCTTATCCTCAAAATGGAATAAACTATAAAGGTACAG
AGGGCCGAGCTCTAAAACGGTAGACGGTAAGTGCAGTAGTGAATGAATAT
TGATCGTAATATGGCGGATAGGGTAGAGTTTATCGAAGTAGTAGACAAAT
GCGGACAAAAAGCGTTCAGAGGCTTTGATGTCATCAAGCGTAATATTTGT
TTTCAGGAGTAAATGGATGGCGTGAATGAGCAGATAAAAGTGTTCAGATT
GACGAGGGGGTAGGAGCTTATACATGACAGGAACGAACGAAATTCGGACG
TTTTCCAATATCCTAGATTTGATTTAATAGATCGTGGCGCTCGTGAAATG
TGGTTTGGGGGTTTTAATGATAGAAGACGATATTCGGTTAAAGCAAGATG
GTCGTGGATTGAGAAGGTTTCGTTTTTGTGAGAAGGTTCGAGCCAAAGGG
ACATAACTAATTTTGTTACGCCAAGCAGGACACAATGCATATAATCTATG
CCAACACCACGGATtatatcaaaacttttcaacaCCATTAAAGAAGATGG
ACCTTTAACTCCACATATGGGTTTCTTATCAATGG

Coding sequence (CDS) from alignment at sc0001480:39570..40254

>TCONS_00036568 ID=TCONS_00036568|Name=TCONS_00036568|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0001480:39570..40254 (Clytia hemisphaerica)
TTTTTTAATACATTTTTCCGTTAGAATGGGAATGAAGTTTGAAGCGGAAA
CAGCGGATGCCAACTGCAATGGTATATTTTGCGTTCCATGGATCAATTTC
ATGATATAGCCATTCTTATCCTCAAAATGGAATAAACTATAAAGGTACAG
AGGGCCGAGCTCTAAAACGGTAGACGGTAAGTGCAGTAGTGAATGAATAT
TGATCGTAATATGGCGGATAGGGTAGAGTTTATCGAAGTAGTAGACAAAT
GCGGACAAAAAGCGTTCAGAGGCTTTGATGTCATCAAGCGTAATATTTGT
TTTCAGGAGTAAATGGATGGCGTGAATGAGCAGATAAAAGTGTTCAGATT
GACGAGGGGGTAGGAGCTTATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021577XLOC_021577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036568-exon-sc0001480-1491911889:39570..40254TCONS_00036568-exon-sc0001480-1491911889:39570..40254Clytia hemisphaericaexon
TCONS_00036568-exon-sc0001480-1510915933:39570..40254TCONS_00036568-exon-sc0001480-1510915933:39570..40254Clytia hemisphaericaexon
TCONS_00036568-exon-sc0001480-1575043694:39570..40254TCONS_00036568-exon-sc0001480-1575043694:39570..40254Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036568-proteinTCONS_00036568-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001480supercontigsc0001480:39570..40254 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.145363	0	0	0.100512	0.317704	0.383296	0.538256	0.376846	0.0777973	0.151024	0.0496386	0.198278	0.257393	0.296256	0.0908367	0.0559517	0.114697	0.237691	0.497453	0	0.316347	0	0.0776939	0.400114	0.357092	0.1022	0.21814	0.165452	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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