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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036565 ID=TCONS_00036565|Name=TCONS_00036565|organism=Clytia hemisphaerica|type=transcript|length=890bp
ACTTAGCAGCGCTCCTTGGTTGTGAGTTCATGAATGATTGGAAAGATTTT
GTCAGGGTTGTGAACCCAATTCCGTACAATAGCTTCGGTATGACGACACT
CTTTATGATAGTTGACACGGTGGCAGGATGCGTCCAGCGGATTCCAGACG
ATATAAGGGATGAAGTTGTTGCCCATAAGTCGGATAATCGGTGGTGGATA
TGATTCCCAAGGGTCAACTGTCTTCCCTGGGTCCCCCACTTGAAGCCAAG
GTGTTTCATTTCCTGCTGTGGTGTAATTGGGTTACCCTCCAAGATGAGCG
TTGGTTCCTGGATAGGGCAGGGGCCAGTAATTACAAATTGTGTTTTGGTT
TGATTGAACTTGAGACCATGCTGCTTGCCAAAGCTGACACATACGTCCAA
CATTTCTTGTAACTGTCTTAGGGTCGGACTTGATAGGATAATGTCATCTG
CAAAGGTAACTATGGATGTGTTAATGTCTCCAGGAAGCATTGTTCCTACA
CCCATGTTTTGAATGTTTTCGATCAATTTTTCGGTATAATGGTTATAAAG
GAATGGCGAGAGTATTGATCCCTGTCTAACACCTTGCGAGAATGTGAACG
AGTCAGAGTATTGATTTCTGTATCTAACTGTGGCGTCTCCTTGTAGATAA
GATTTGATCAAGAATTTGAGGACAACGTTTGGGACGATCTGTTGCTTGTG
AAGCAGAGTAAATAGTTTAAACCAATTACAAGTGTCAAAAGCTTTTTCAG
CATCCAAGCTGCATAGGTATACTGGTGTTTTCTCTGTGTTATATTTTACA
ATTGTTTCCTTGATAAATAATTCTGCATGAATCGTAGAGGAATTTTCTGC
AAAGCCAAATTGCATATTGTTGTGTTGTTTAATGTTTGGA Run BLAST on NCBI protein sequence of TCONS_00036565-protein >TCONS_00036565-protein ID=TCONS_00036565-protein|Name=TCONS_00036565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
PNIKQHNNMQFGFAENSSTIHAELFIKETIVKYNTEKTPVYLCSLDAEKA
FDTCNWFKLFTLLHKQQIVPNVVLKFLIKSYLQGDATVRYRNQYSDSFTF
SQGVRQGSILSPFLYNHYTEKLIENIQNMGVGTMLPGDINTSIVTFADDI
ILSSPTLRQLQEMLDVCVSFGKQHGLKFNQTKTQFVITGPCPIQEPTLIL
EGNPITPQQEMKHLGFKWGTQGRQLTLGNHIHHRLSDLWATTSSLISSGI
RWTHPATVSTIIKSVVIPKLLYGIGFTTLTKSFQSFMNSQPRSAAK Run BLAST on NCBI transcript from alignment at sc0001480:28386..29275 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036565 ID=TCONS_00036565|Name=TCONS_00036565|organism=Clytia hemisphaerica|type=transcript|length=890bp|location=Sequence derived from alignment at sc0001480:28386..29275 (Clytia hemisphaerica)
TCCAAACATTAAACAACACAACAATATGCAATTTGGCTTTGCAGAAAATT
CCTCTACGATTCATGCAGAATTATTTATCAAGGAAACAATTGTAAAATAT
AACACAGAGAAAACACCAGTATACCTATGCAGCTTGGATGCTGAAAAAGC
TTTTGACACTTGTAATTGGTTTAAACTATTTACTCTGCTTCACAAGCAAC
AGATCGTCCCAAACGTTGTCCTCAAATTCTTGATCAAATCTTATCTACAA
GGAGACGCCACAGTTAGATACAGAAATCAATACTCTGACTCGTTCACATT
CTCGCAAGGTGTTAGACAGGGATCAATACTCTCGCCATTCCTTTATAACC
ATTATACCGAAAAATTGATCGAAAACATTCAAAACATGGGTGTAGGAACA
ATGCTTCCTGGAGACATTAACACATCCATAGTTACCTTTGCAGATGACAT
TATCCTATCAAGTCCGACCCTAAGACAGTTACAAGAAATGTTGGACGTAT
GTGTCAGCTTTGGCAAGCAGCATGGTCTCAAGTTCAATCAAACCAAAACA
CAATTTGTAATTACTGGCCCCTGCCCTATCCAGGAACCAACGCTCATCTT
GGAGGGTAACCCAATTACACCACAGCAGGAAATGAAACACCTTGGCTTCA
AGTGGGGGACCCAGGGAAGACAGTTGACCCTTGGGAATCATATCCACCAC
CGATTATCCGACTTATGGGCAACAACTTCATCCCTTATATCGTCTGGAAT
CCGCTGGACGCATCCTGCCACCGTGTCAACTATCATAAAGAGTGTCGTCA
TACCGAAGCTATTGTACGGAATTGGGTTCACAACCCTGACAAAATCTTTC
CAATCATTCATGAACTCACAACCAAGGAGCGCTGCTAAGT Coding sequence (CDS) from alignment at sc0001480:28386..29275 >TCONS_00036565 ID=TCONS_00036565|Name=TCONS_00036565|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0001480:28386..29275 (Clytia hemisphaerica)
CCAAACATTAAACAACACAACAATATGCAATTTGGCTTTGCAGAAAATTC
CTCTACGATTCATGCAGAATTATTTATCAAGGAAACAATTGTAAAATATA
ACACAGAGAAAACACCAGTATACCTATGCAGCTTGGATGCTGAAAAAGCT
TTTGACACTTGTAATTGGTTTAAACTATTTACTCTGCTTCACAAGCAACA
GATCGTCCCAAACGTTGTCCTCAAATTCTTGATCAAATCTTATCTACAAG
GAGACGCCACAGTTAGATACAGAAATCAATACTCTGACTCGTTCACATTC
TCGCAAGGTGTTAGACAGGGATCAATACTCTCGCCATTCCTTTATAACCA
TTATACCGAAAAATTGATCGAAAACATTCAAAACATGGGTGTAGGAACAA
TGCTTCCTGGAGACATTAACACATCCATAGTTACCTTTGCAGATGACATT
ATCCTATCAAGTCCGACCCTAAGACAGTTACAAGAAATGTTGGACGTATG
TGTCAGCTTTGGCAAGCAGCATGGTCTCAAGTTCAATCAAACCAAAACAC
AATTTGTAATTACTGGCCCCTGCCCTATCCAGGAACCAACGCTCATCTTG
GAGGGTAACCCAATTACACCACAGCAGGAAATGAAACACCTTGGCTTCAA
GTGGGGGACCCAGGGAAGACAGTTGACCCTTGGGAATCATATCCACCACC
GATTATCCGACTTATGGGCAACAACTTCATCCCTTATATCGTCTGGAATC
CGCTGGACGCATCCTGCCACCGTGTCAACTATCATAAAGAGTGTCGTCAT
ACCGAAGCTATTGTACGGAATTGGGTTCACAACCCTGACAAAATCTTTCC
AATCATTCATGAACTCACAACCAAGGAGCGCTGCTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036565-exon-sc0001480-1491911889:28386..29275 | TCONS_00036565-exon-sc0001480-1491911889:28386..29275 | Clytia hemisphaerica | exon |
| TCONS_00036565-exon-sc0001480-1510915933:28386..29275 | TCONS_00036565-exon-sc0001480-1510915933:28386..29275 | Clytia hemisphaerica | exon |
| TCONS_00036565-exon-sc0001480-1575043694:28386..29275 | TCONS_00036565-exon-sc0001480-1575043694:28386..29275 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001480 | supercontig | sc0001480:28386..29275 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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