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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036563 ID=TCONS_00036563|Name=TCONS_00036563|organism=Clytia hemisphaerica|type=transcript|length=2163bp
GCATTTTGAGAAAATCCGAAATTGTTTCCAATCGTGAACCATTAAAATTT
AGTCTCTTACAGTTTTCATAAATAAACCAGTTATCTCGTTATACCTTAAC
TGTAAGCTGGGTATagtatataaaaaaacttgacAAAGTTGGTTgtaaat
tttctatgtttgacCTTCTTACACAGCTCGCTAATTTTAGTTAACACATG
TTTAACTTGTGCAGAAACAGACTGTTTATCAAAAGTGACCATAAAACCCC
TCTTATCGCGATGAAAGTATGATGTTAATTTCAAATGCAAAAAGTTTCCA
ATACATCACAACAAAAAAGACATAAATGTAGAAAAAAATAGGTCTGCTGT
GTTAGAAATCAGGCTACAggtgaaaaaataacaaaacattAGTGTCCATT
ATCCAAAgaagaagattttcttttgatttcccCTCTCAACGATTTTGATT
TTGTCacattttttgccattttgtgAGACTGGACTTTGTCTTTTGCAAAT
GAATGTGATCTAATTCGTACGTAAAGTGTCAAAAGATCATCCAATAAGTT
CATTGCAATCTCCTTTTTCACAGGAGTTTCAGCTTTATGCCGGATTGAAT
TAAAATTGGCAAGGAGGAAAGGGTTTGCCATTAACGACGATACAATATAT
TCAACATTGATTCTTGTAACTTTCCGATCAGTTGTTGCAGACACAAAATA
TGATTCTGCAAGCATGAACACGTTGAAGATTGACCTGTTAACTTTCCACA
AACCACCTCTATTGTTAAGGTTAACAAGGCGATGATGTGATACATCGGTT
TCTTGACCTTCTTGATATTTACAAGCtttcaaaaatgccaaatattGTTC
ATCATAGCGTCCTTTGATTCGTGGACGTTTGGAATAACATACTTTTCGGA
AAACATTTCCAACTACAACGCCACTAAggttgaaaataatttctctgtcc
ttttgatcgaaatttatctttttatctTCAAAAGTTATGTCGTCATCCAC
AATTTCTGAGTTGGCAAGGTACGACAAAACACCATTTGCCAACTCAAACA
TAAGTAGAGTGTTACCTGTGTCGTCCAGAAAGTCATAAATGACACAGGTT
TCAAAATGTTCTATAAAGTTTGGGTAAAATTTTTCTGTATCTCCTTTGAA
CTTTTTAACAACATTGTTTAGGACATTATCATATAGTGATCTCGTGGATA
TGTATGTTATTTTATCATACTGAGTCTCAAATTGTTTTCGTGTTGTTTCT
GGATAGCATTTATCTATAGCCAGTCTTCGGAATATACCCCTGACGATCTT
TATGAAAGAAGTGTCAGGTAGTAATTCACTTGGTGCAGAAAGTTGTTGAG
CTGGTGGTTTCtgttgcttttgttttgatgatgatGGTTTTGTTGATGCT
GCTGGTTCAGTAGTCTGAGACGTCTCAGAATGCTGGTTCGTCATGTGCCT
CTTCAAGCCACGTTGAGAGACACAAACCTTGCCACAGTGAAGACATTTTA
CTTTGTTGGTCTCAGGTGGTGTTTCTGGTACCTCAAAGTTAAGGAGAATA
GCATTCATTTCTTCATCGTCGAAGAAATTGTAGTCATCAGTGGCATCAGT
ACCTCTGTCAGCACCTTCActttccgccattttgaaaattctatgCACCC
TCTGTACGGCCGTCTATTTTGATAGAGTTAAAAACATACGGGCCGTCCTT
TCAGACTAACTCTTTATTATGACTATGGTCAGACACACATCATGAAATTG
CGCCCCTGTCAGAtcaggattttgcaattttagataccctgtcagtaatt
ctgcaacactgaaaaaggtaccctgaccagtaTAAAAAGCAAATTAAGAG
AATAAGATCAGGCAGTCAAAGTGATTATTTTATATTGTATATAATCTAAT
CAAGAATATCCAACTAAAACTTCTCTAACCTGAGGATAGTAAACAGAAGA
TGTAGCAAATAAAGCAGAAAATGTTAACTGTTAACAGCTGTTAAATGTTG
TTGTTATGCATAATGTTTAACACTTCATCCAAAAAACTGAACGTTATTGT
GGAGAAATTGTTATTTCTGCAACGAATACAACTTGATCTGTCATACTTGC
TGCAACACAAGGCGTATACGACTGGTGTTCGTGTTGTTCCGCGACAATAC
AAGCACATAAGCG Run BLAST on NCBI protein sequence of TCONS_00036563-protein >TCONS_00036563-protein ID=TCONS_00036563-protein|Name=TCONS_00036563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=413bp
MAESEGADRGTDATDDYNFFDDEEMNAILLNFEVPETPPETNKVKCLHCG
KVCVSQRGLKRHMTNQHSETSQTTEPAASTKPSSSKQKQQKPPAQQLSAP
SELLPDTSFIKIVRGIFRRLAIDKCYPETTRKQFETQYDKITYISTRSLY
DNVLNNVVKKFKGDTEKFYPNFIEHFETCVIYDFLDDTGNTLLMFELANG
VLSYLANSEIVDDDITFEDKKINFDQKDREIIFNLSGVVVGNVFRKVCYS
KRPRIKGRYDEQYLAFLKACKYQEGQETDVSHHRLVNLNNRGGLWKVNRS
IFNVFMLAESYFVSATTDRKVTRINVEYIVSSLMANPFLLANFNSIRHKA
ETPVKKEIAMNLLDDLLTLYVRIRSHSFAKDKVQSHKMAKNVTKSKSLRG
EIKRKSSSLDNGH Run BLAST on NCBI transcript from alignment at sc0001480:22983..25145 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036563 ID=TCONS_00036563|Name=TCONS_00036563|organism=Clytia hemisphaerica|type=transcript|length=2163bp|location=Sequence derived from alignment at sc0001480:22983..25145 (Clytia hemisphaerica)
CGCTTATGTGCTTGTATTGTCGCGGAACAACACGAACACCAGTCGTATAC
GCCTTGTGTTGCAGCAAGTATGACAGATCAAGTTGTATTCGTTGCAGAAA
TAACAATTTCTCCACAATAACGTTCAGTTTTTTGGATGAAGTGTTAAACA
TTATGCATAACAACAACATTTAACAGCTGTTAACAGTTAACATTTTCTGC
TTTATTTGCTACATCTTCTGTTTACTATCCTCAGGTTAGAGAAGTTTTAG
TTGGATATTCTTGATTAGATTATATACAATATAAAATAATCACTTTGACT
GCCTGATCTTATTCTCTTAATTTGCTTTTTAtactggtcagggtaccttt
ttcagtgttgcagaattactgacagggtatctaaaattgcaaaatcctga
TCTGACAGGGGCGCAATTTCATGATGTGTGTCTGACCATAGTCATAATAA
AGAGTTAGTCTGAAAGGACGGCCCGTATGTTTTTAACTCTATCAAAATAG
ACGGCCGTACAGAGGGTGcatagaattttcaaaatggcggaaagTGAAGG
TGCTGACAGAGGTACTGATGCCACTGATGACTACAATTTCTTCGACGATG
AAGAAATGAATGCTATTCTCCTTAACTTTGAGGTACCAGAAACACCACCT
GAGACCAACAAAGTAAAATGTCTTCACTGTGGCAAGGTTTGTGTCTCTCA
ACGTGGCTTGAAGAGGCACATGACGAACCAGCATTCTGAGACGTCTCAGA
CTACTGAACCAGCAGCATCAACAAAACCatcatcatcaaaacaaaagcaa
caGAAACCACCAGCTCAACAACTTTCTGCACCAAGTGAATTACTACCTGA
CACTTCTTTCATAAAGATCGTCAGGGGTATATTCCGAAGACTGGCTATAG
ATAAATGCTATCCAGAAACAACACGAAAACAATTTGAGACTCAGTATGAT
AAAATAACATACATATCCACGAGATCACTATATGATAATGTCCTAAACAA
TGTTGTTAAAAAGTTCAAAGGAGATACAGAAAAATTTTACCCAAACTTTA
TAGAACATTTTGAAACCTGTGTCATTTATGACTTTCTGGACGACACAGGT
AACACTCTACTTATGTTTGAGTTGGCAAATGGTGTTTTGTCGTACCTTGC
CAACTCAGAAATTGTGGATGACGACATAACTTTTGAagataaaaagataa
atttcgatcaaaaggacagagaaattattttcaaccTTAGTGGCGTTGTA
GTTGGAAATGTTTTCCGAAAAGTATGTTATTCCAAACGTCCACGAATCAA
AGGACGCTATGATGAACaatatttggcatttttgaaaGCTTGTAAATATC
AAGAAGGTCAAGAAACCGATGTATCACATCATCGCCTTGTTAACCTTAAC
AATAGAGGTGGTTTGTGGAAAGTTAACAGGTCAATCTTCAACGTGTTCAT
GCTTGCAGAATCATATTTTGTGTCTGCAACAACTGATCGGAAAGTTACAA
GAATCAATGTTGAATATATTGTATCGTCGTTAATGGCAAACCCTTTCCTC
CTTGCCAATTTTAATTCAATCCGGCATAAAGCTGAAACTCCTGTGAAAAA
GGAGATTGCAATGAACTTATTGGATGATCTTTTGACACTTTACGTACGAA
TTAGATCACATTCATTTGCAAAAGACAAAGTCCAGTCTcacaaaatggca
aaaaatgtGACAAAATCAAAATCGTTGAGAGgggaaatcaaaagaaaatc
ttcttcTTTGGATAATGGACACTaatgttttgttattttttcaccTGTAG
CCTGATTTCTAACACAGCAGACCTATTTTTTTCTACATTTATGTCTTTTT
TGTTGTGATGTATTGGAAACTTTTTGCATTTGAAATTAACATCATACTTT
CATCGCGATAAGAGGGGTTTTATGGTCACTTTTGATAAACAGTCTGTTTC
TGCACAAGTTAAACATGTGTTAACTAAAATTAGCGAGCTGTGTAAGAAGg
tcaaacatagaaaatttacAACCAACTTTgtcaagtttttttatatactA
TACCCAGCTTACAGTTAAGGTATAACGAGATAACTGGTTTATTTATGAAA
ACTGTAAGAGACTAAATTTTAATGGTTCACGATTGGAAACAATTTCGGAT
TTTCTCAAAATGC Coding sequence (CDS) from alignment at sc0001480:22983..25145 >TCONS_00036563 ID=TCONS_00036563|Name=TCONS_00036563|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at sc0001480:22983..25145 (Clytia hemisphaerica)
atggcggaaagTGAAGGTGCTGACAGAGGTACTGATGCCACTGATGACTA
CAATTTCTTCGACGATGAAGAAATGAATGCTATTCTCCTTAACTTTGAGG
TACCAGAAACACCACCTGAGACCAACAAAGTAAAATGTCTTCACTGTGGC
AAGGTTTGTGTCTCTCAACGTGGCTTGAAGAGGCACATGACGAACCAGCA
TTCTGAGACGTCTCAGACTACTGAACCAGCAGCATCAACAAAACCatcat
catcaaaacaaaagcaacaGAAACCACCAGCTCAACAACTTTCTGCACCA
AGTGAATTACTACCTGACACTTCTTTCATAAAGATCGTCAGGGGTATATT
CCGAAGACTGGCTATAGATAAATGCTATCCAGAAACAACACGAAAACAAT
TTGAGACTCAGTATGATAAAATAACATACATATCCACGAGATCACTATAT
GATAATGTCCTAAACAATGTTGTTAAAAAGTTCAAAGGAGATACAGAAAA
ATTTTACCCAAACTTTATAGAACATTTTGAAACCTGTGTCATTTATGACT
TTCTGGACGACACAGGTAACACTCTACTTATGTTTGAGTTGGCAAATGGT
GTTTTGTCGTACCTTGCCAACTCAGAAATTGTGGATGACGACATAACTTT
TGAagataaaaagataaatttcgatcaaaaggacagagaaattattttca
accTTAGTGGCGTTGTAGTTGGAAATGTTTTCCGAAAAGTATGTTATTCC
AAACGTCCACGAATCAAAGGACGCTATGATGAACaatatttggcattttt
gaaaGCTTGTAAATATCAAGAAGGTCAAGAAACCGATGTATCACATCATC
GCCTTGTTAACCTTAACAATAGAGGTGGTTTGTGGAAAGTTAACAGGTCA
ATCTTCAACGTGTTCATGCTTGCAGAATCATATTTTGTGTCTGCAACAAC
TGATCGGAAAGTTACAAGAATCAATGTTGAATATATTGTATCGTCGTTAA
TGGCAAACCCTTTCCTCCTTGCCAATTTTAATTCAATCCGGCATAAAGCT
GAAACTCCTGTGAAAAAGGAGATTGCAATGAACTTATTGGATGATCTTTT
GACACTTTACGTACGAATTAGATCACATTCATTTGCAAAAGACAAAGTCC
AGTCTcacaaaatggcaaaaaatgtGACAAAATCAAAATCGTTGAGAGgg
gaaatcaaaagaaaatcttcttcTTTGGATAATGGACACTaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036563-exon-sc0001480-1491911889:22983..25145 | TCONS_00036563-exon-sc0001480-1491911889:22983..25145 | Clytia hemisphaerica | exon |
| TCONS_00036563-exon-sc0001480-1510915933:22983..25145 | TCONS_00036563-exon-sc0001480-1510915933:22983..25145 | Clytia hemisphaerica | exon |
| TCONS_00036563-exon-sc0001480-1575043694:22983..25145 | TCONS_00036563-exon-sc0001480-1575043694:22983..25145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001480 | supercontig | sc0001480:22983..25145 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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