TCONS_00036562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036562
Unique NameTCONS_00036562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length149

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036562 ID=TCONS_00036562|Name=TCONS_00036562|organism=Clytia hemisphaerica|type=transcript|length=149bp
cactcgaaacaatcccacaatgcatcgcttttttagaaaagtaaaaaact
ctgataaggtcCATTAAAAAATAACGTGTCTGTTCTTCGCAGCATACCTC
CTCAACAAATGTTACTGACCACAATCACCCAATATTCGATAGCGTATTA
Run BLAST on NCBI

transcript from alignment at sc0001480:18466..18614

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036562 ID=TCONS_00036562|Name=TCONS_00036562|organism=Clytia hemisphaerica|type=transcript|length=149bp|location=Sequence derived from alignment at sc0001480:18466..18614 (Clytia hemisphaerica)
TAATACGCTATCGAATATTGGGTGATTGTGGTCAGTAACATTTGTTGAGG
AGGTATGCTGCGAAGAACAGACACGTTATTTTTTAATGgaccttatcaga
gttttttacttttctaaaaaagcgatgcattgtgggattgtttcgagtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021571XLOC_021571Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036562-exon-sc0001480-1491911889:18466..18614TCONS_00036562-exon-sc0001480-1491911889:18466..18614Clytia hemisphaericaexon
TCONS_00036562-exon-sc0001480-1510915933:18466..18614TCONS_00036562-exon-sc0001480-1510915933:18466..18614Clytia hemisphaericaexon
TCONS_00036562-exon-sc0001480-1575043694:18466..18614TCONS_00036562-exon-sc0001480-1575043694:18466..18614Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001480supercontigsc0001480:18466..18614 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top