TCONS_00036558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036558
Unique NameTCONS_00036558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036558 ID=TCONS_00036558|Name=TCONS_00036558|organism=Clytia hemisphaerica|type=transcript|length=596bp
ctaaatttggcggAGGGACCTAaaaccccagtcggagccatgtTTACCCC
AATTTTAGTACACTGGTAATAAAATCATAATTAAAAATCGTCTCGAAATT
CAGAGAAAAAACATGTCACCTTGCAAAACTAAAACCATGAGTTTAATTCT
AGCCAAGTTTgttgaaatattaaaataaatatattttacttttagaTTCT
GTAATATTTTATTAATGGTATTTCCTGCTAGAAAAGGTTCAACTTATAAA
GTTGCCAGCACTTGGGTTtctaacaaaagaagaaaaactagATTAAAAGG
TCCGCCAAAATATAATCAGCGATCAAATGCAAAAGATATTCCCTCAACTT
CCTCTTCATATCAAACCAATGTACCTCACGAAAGAGACAACTTTACAAGC
ATGTTGTCTGACAATGAAGTTGACACACCTGATATGGAACAGCAGAAAAA
GGGCAGATACGAACTCGGCAAAAAAGGAGCTAGGACATTGGGATAGATAT
AATACCgtatttttaaaattgtatgcACAAAAGCTGGACTTTGCCCCAGA
ATGTTGCTGTTTTTGCGAAGAAGTCTTTCCTGCTGGTTACATATGG
Run BLAST on NCBI

transcript from alignment at sc0001479:49852..50447

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036558 ID=TCONS_00036558|Name=TCONS_00036558|organism=Clytia hemisphaerica|type=transcript|length=596bp|location=Sequence derived from alignment at sc0001479:49852..50447 (Clytia hemisphaerica)
CCATATGTAACCAGCAGGAAAGACTTCTTCGCAAAAACAGCAACATTCTG
GGGCAAAGTCCAGCTTTTGTgcatacaattttaaaaatacGGTATTATAT
CTATCCCAATGTCCTAGCTCCTTTTTTGCCGAGTTCGTATCTGCCCTTTT
TCTGCTGTTCCATATCAGGTGTGTCAACTTCATTGTCAGACAACATGCTT
GTAAAGTTGTCTCTTTCGTGAGGTACATTGGTTTGATATGAAGAGGAAGT
TGAGGGAATATCTTTTGCATTTGATCGCTGATTATATTTTGGCGGACCTT
TTAATctagtttttcttcttttgttagaAACCCAAGTGCTGGCAACTTTA
TAAGTTGAACCTTTTCTAGCAGGAAATACCATTAATAAAATATTACAGAA
tctaaaagtaaaatatatttattttaatatttcaacAAACTTGGCTAGAA
TTAAACTCATGGTTTTAGTTTTGCAAGGTGACATGTTTTTTCTCTGAATT
TCGAGACGATTTTTAATTATGATTTTATTACCAGTGTACTAAAATTGGGG
TAAacatggctccgactggggtttTAGGTCCCTccgccaaatttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021567XLOC_021567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036558-exon-sc0001479-1491911889:49852..50447TCONS_00036558-exon-sc0001479-1491911889:49852..50447Clytia hemisphaericaexon
TCONS_00036558-exon-sc0001479-1510915933:49852..50447TCONS_00036558-exon-sc0001479-1510915933:49852..50447Clytia hemisphaericaexon
TCONS_00036558-exon-sc0001479-1575043694:49852..50447TCONS_00036558-exon-sc0001479-1575043694:49852..50447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001479supercontigsc0001479:49852..50447 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.30499	5.37305	2.1215	3.75156	1.54503	2.87066	1.6718	0.671596	0.792601	1.89952	0	0	0	0	0	0	0	0	0	0	0.098426	0.790586	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top