TCONS_00036556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036556
Unique NameTCONS_00036556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036556 ID=TCONS_00036556|Name=TCONS_00036556|organism=Clytia hemisphaerica|type=transcript|length=474bp
gcaaaaattaatcccattaatGTAGTGAAAATACAAGTTGTTTAAAACGG
aaatattctctttttttaattaaacttgatataaataaaacaatcaatat
aaacTTAAATAAATACATTATTATGTACACATTCATGAGCTCCGGCGAAC
CGGTAGGTAGAAGTGAGGAAGCCAATTTCTTTAGGAAAAATTGTCAACCA
CCTTGTGCGACGAAGAAaacttttccctttttttgCACCTTCTAAACACC
ATTAAACGCTATCTAATTGAACAAAAACATAGTACTTAAGGTTTTTGACT
TAcaaaaaaatactgaaaaaagtGAAGGGGTCATACCCCTTGGTCCGCCG
TCGACGGGGCCCAtgacataaacaaaaacaagtTAGAATTCTTGAATCTT
GAGACcaaaatcattcgaattagcGCCAGATACGTCTTATTGATTTCACG
GGTGTAAACAAATAGCTGAAAAAA
Run BLAST on NCBI

transcript from alignment at sc0001479:36851..37324

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036556 ID=TCONS_00036556|Name=TCONS_00036556|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at sc0001479:36851..37324 (Clytia hemisphaerica)
TTTTTTCAGCTATTTGTTTACACCCGTGAAATCAATAAGACGTATCTGGC
gctaattcgaatgattttgGTCTCAAGATTCAAGAATTCTAacttgtttt
tgtttatgtcaTGGGCCCCGTCGACGGCGGACCAAGGGGTATGACCCCTT
CacttttttcagtatttttttgTAAGTCAAAAACCTTAAGTACTATGTTT
TTGTTCAATTAGATAGCGTTTAATGGTGTTTAGAAGGTGcaaaaaaaggg
aaaagttTTCTTCGTCGCACAAGGTGGTTGACAATTTTTCCTAAAGAAAT
TGGCTTCCTCACTTCTACCTACCGGTTCGCCGGAGCTCATGAATGTGTAC
ATAATAATGTATTTATTTAAgtttatattgattgttttatttatatcaag
tttaattaaaaaaagagaatatttCCGTTTTAAACAACTTGTATTTTCAC
TACattaatgggattaatttttgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021565XLOC_021565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036556-exon-sc0001479-1491911889:36851..37324TCONS_00036556-exon-sc0001479-1491911889:36851..37324Clytia hemisphaericaexon
TCONS_00036556-exon-sc0001479-1510915933:36851..37324TCONS_00036556-exon-sc0001479-1510915933:36851..37324Clytia hemisphaericaexon
TCONS_00036556-exon-sc0001479-1575043694:36851..37324TCONS_00036556-exon-sc0001479-1575043694:36851..37324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001479supercontigsc0001479:36851..37324 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.17036	3.51086	1.73176	1.9273	0	0	0	0	0	0.311041	0	0.495377	0.280418	0	0.243393	0.207994	0	0	0	0	0.729532	0	2.85974	0.991837	0.883477	1.29758	0.484491	0.691929	0.434054	0.501349
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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