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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036548 ID=TCONS_00036548|Name=TCONS_00036548|organism=Clytia hemisphaerica|type=transcript|length=1180bp
GCTTATTCCACTCCCTTACaataagcacaaaagagtataaGAAAACTGAT
TCTCAAACAGCTGACAATGTCAATGATAAAGGCTGTCAGTGTACAAATGC
AATAACAAAGTTGAAtgggattttgaaagaaattggaAAACAAAATAAAC
TTTAAAGTAATTGCTTGTGTAAGCCAAACAGTGTGCATGTTAGGGATAAG
AGTTTTTCGTTAGTTTCTTGCAGctcattttttaaatgatatataaaaca
gaccttgaatGTATGATCGATACTCAAAATTTCAGCTGACAGATCCTCCA
TCGAATGTATGAAATCATCCTTGTTGCCCTCAAACCAAGCTTTAAACATG
TCCTCCAGTGTATTTTGACATGGTAGCATGTTGATCAAAAGTTCTTGAAT
GTCACTGAGATAGTCTGTATCCACTGATTCTCCTTTCAACTTACAATCCA
AAATGTATCTGTATTTGTTTTCATAAAACAACGCCAAAGTTCTCTCTTTC
AAAagatttcgaattttttcaaaggaaaGCCCATTGATTACATATTGTAA
CTGGGTAAAAAGATAAGATTGTTTAACTGCATATTTTGTTGTTAGGGCTA
TATCTGAACTATGCCTTGTCATCTGGTTTATAATGCGTTCATCAGTAGAT
CTAACAAAATGTTTTCCAACAGCACATTTGTAAACCTTCCCAACAAGTAA
TGCGGGTCCAGTTAAGTCAAAAGATTTTCTTGGTGTGAGAGAGTTATCAC
GCCCATCCATCCATTGGTTGGTGTCAGTGAGCTCAGACAGGTGTTCTGGA
CAAAAGAACTGATGTCCTGGGGTGGCTTTCAATGGATCCCATACCAAAAT
ATCAGGAATGAATGGGCAAGGTAACTTGTATTTAAAAATACTATCCAACA
AAGTTGAATTTATGACACCACAATAAAACTTGTTCCTCTCTGCAAACTCA
ATTGCTTTAACGatggaatttttccaagcttcaGGGATTATCATTTTTGC
TTCTTTGATTAGAAAATGTACATTAGTCATCAATTAATAAATGTTATTGA
TTGTATGAGTGGCAATGTTGAGTATTTTTCTTAGAGGGCCATAACCGAGA
GAgattaccgtaacttggtctaatgtcgacacccctcctctaattccaac
accctttttatcagctgaaatttatggaaa Run BLAST on NCBI protein sequence of TCONS_00036548-protein >TCONS_00036548-protein ID=TCONS_00036548-protein|Name=TCONS_00036548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MTNVHFLIKEAKMIIPEAWKNSIVKAIEFAERNKFYCGVINSTLLDSIFK
YKLPCPFIPDILVWDPLKATPGHQFFCPEHLSELTDTNQWMDGRDNSLTP
RKSFDLTGPALLVGKVYKCAVGKHFVRSTDERIINQMTRHSSDIALTTKY
AVKQSYLFTQLQYVINGLSFEKIRNLLKERTLALFYENKYRYILDCKLKG
ESVDTDYLSDIQELLINMLPCQNTLEDMFKAWFEGNKDDFIHSMEDLSAE
ILSIDHTFKVCFIYHLKNELQETNEKLLSLTCTLFGLHKQLL Run BLAST on NCBI transcript from alignment at sc0001478:56110..57289 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036548 ID=TCONS_00036548|Name=TCONS_00036548|organism=Clytia hemisphaerica|type=transcript|length=1180bp|location=Sequence derived from alignment at sc0001478:56110..57289 (Clytia hemisphaerica)
tttccataaatttcagctgataaaaagggtgttggaattagaggaggggt
gtcgacattagaccaagttacggtaatcTCTCTCGGTTATGGCCCTCTAA
GAAAAATACTCAACATTGCCACTCATACAATCAATAACATTTATTAATTG
ATGACTAATGTACATTTTCTAATCAAAGAAGCAAAAATGATAATCCCtga
agcttggaaaaattccatCGTTAAAGCAATTGAGTTTGCAGAGAGGAACA
AGTTTTATTGTGGTGTCATAAATTCAACTTTGTTGGATAGTATTTTTAAA
TACAAGTTACCTTGCCCATTCATTCCTGATATTTTGGTATGGGATCCATT
GAAAGCCACCCCAGGACATCAGTTCTTTTGTCCAGAACACCTGTCTGAGC
TCACTGACACCAACCAATGGATGGATGGGCGTGATAACTCTCTCACACCA
AGAAAATCTTTTGACTTAACTGGACCCGCATTACTTGTTGGGAAGGTTTA
CAAATGTGCTGTTGGAAAACATTTTGTTAGATCTACTGATGAACGCATTA
TAAACCAGATGACAAGGCATAGTTCAGATATAGCCCTAACAACAAAATAT
GCAGTTAAACAATCTTATCTTTTTACCCAGTTACAATATGTAATCAATGG
GCtttcctttgaaaaaattcgaaatctTTTGAAAGAGAGAACTTTGGCGT
TGTTTTATGAAAACAAATACAGATACATTTTGGATTGTAAGTTGAAAGGA
GAATCAGTGGATACAGACTATCTCAGTGACATTCAAGAACTTTTGATCAA
CATGCTACCATGTCAAAATACACTGGAGGACATGTTTAAAGCTTGGTTTG
AGGGCAACAAGGATGATTTCATACATTCGATGGAGGATCTGTCAGCTGAA
ATTTTGAGTATCGATCATACattcaaggtctgttttatatatcatttaaa
aaatgagCTGCAAGAAACTAACGAAAAACTCTTATCCCTAACATGCACAC
TGTTTGGCTTACACAAGCAATTACTTTAAAGTTTATTTTGTTTtccaatt
tctttcaaaatcccaTTCAACTTTGTTATTGCATTTGTACACTGACAGCC
TTTATCATTGACATTGTCAGCTGTTTGAGAATCAGTTTTCttatactctt
ttgtgcttattGTAAGGGAGTGGAATAAGC Coding sequence (CDS) from alignment at sc0001478:56110..57289 >TCONS_00036548 ID=TCONS_00036548|Name=TCONS_00036548|organism=Clytia hemisphaerica|type=CDS|length=879bp|location=Sequence derived from alignment at sc0001478:56110..57289 (Clytia hemisphaerica)
ATGACTAATGTACATTTTCTAATCAAAGAAGCAAAAATGATAATCCCtga
agcttggaaaaattccatCGTTAAAGCAATTGAGTTTGCAGAGAGGAACA
AGTTTTATTGTGGTGTCATAAATTCAACTTTGTTGGATAGTATTTTTAAA
TACAAGTTACCTTGCCCATTCATTCCTGATATTTTGGTATGGGATCCATT
GAAAGCCACCCCAGGACATCAGTTCTTTTGTCCAGAACACCTGTCTGAGC
TCACTGACACCAACCAATGGATGGATGGGCGTGATAACTCTCTCACACCA
AGAAAATCTTTTGACTTAACTGGACCCGCATTACTTGTTGGGAAGGTTTA
CAAATGTGCTGTTGGAAAACATTTTGTTAGATCTACTGATGAACGCATTA
TAAACCAGATGACAAGGCATAGTTCAGATATAGCCCTAACAACAAAATAT
GCAGTTAAACAATCTTATCTTTTTACCCAGTTACAATATGTAATCAATGG
GCtttcctttgaaaaaattcgaaatctTTTGAAAGAGAGAACTTTGGCGT
TGTTTTATGAAAACAAATACAGATACATTTTGGATTGTAAGTTGAAAGGA
GAATCAGTGGATACAGACTATCTCAGTGACATTCAAGAACTTTTGATCAA
CATGCTACCATGTCAAAATACACTGGAGGACATGTTTAAAGCTTGGTTTG
AGGGCAACAAGGATGATTTCATACATTCGATGGAGGATCTGTCAGCTGAA
ATTTTGAGTATCGATCATACattcaaggtctgttttatatatcatttaaa
aaatgagCTGCAAGAAACTAACGAAAAACTCTTATCCCTAACATGCACAC
TGTTTGGCTTACACAAGCAATTACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036548-exon-sc0001478-1491911889:56110..57289 | TCONS_00036548-exon-sc0001478-1491911889:56110..57289 | Clytia hemisphaerica | exon |
| TCONS_00036548-exon-sc0001478-1510915933:56110..57289 | TCONS_00036548-exon-sc0001478-1510915933:56110..57289 | Clytia hemisphaerica | exon |
| TCONS_00036548-exon-sc0001478-1575043694:56110..57289 | TCONS_00036548-exon-sc0001478-1575043694:56110..57289 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001478 | supercontig | sc0001478:56110..57289 . |
Blast
The following BLAST results are available for this feature:
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