TCONS_00036536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036536
Unique NameTCONS_00036536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length870

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036536 ID=TCONS_00036536|Name=TCONS_00036536|organism=Clytia hemisphaerica|type=transcript|length=870bp
tcgaTAGTATAGAGTACGCATTCTGATCATCACACTTTTAACTTGTTATC
TTATGAGAAGGATGTTGTATGTCGAGGGAAGTCAAGATGAAAAAGTtatg
attttctaattttacaAATCTGGAATTTAGTCAATTGAACTTCAAGTTTA
TTCCAATCACATTCTATCTTTGTGGCATGGTACATTTCATAGCACGTATT
CTTAGGCCAGTCGtTTCAGAATTACCAAAGGGAGATAAACCAAACGAAAT
TATTAACCTTGAACAACATGAACAACAGTCCACCACTTCCCTGATGAAGA
TTTAAAATCCCAACATCAAACTAGTTAATGAAATAGAGCACAAAATTTGT
TTGATTCTCAAGAAAGATGACAAGTTAGGGGCATTTGCTGATATCTGTTT
ATGACGTTTATAAATCACTGGGTATTGTGGTCATGCTATTCTTATAAAGC
CTATGGCAACTTTTTAGGTGGAAGTCCAAGAAAACATCAACTGCCAATCG
GTCAACTACGTTCAATTATCAACTGCTAGAACTAAATTGTGTTAAGGCTT
TTCCTAGCTACCATTAACTACAAATTGTTTGACAACGATGAAGTGCTGAG
GAGaggttttctttgaaattcaagtAGCGCAATACATCATCATATTCTAG
GGTCCAGAAATTACTTATAATTAAAGACAATTAAAGACATTAAGCATAAT
GGATATCATCACGGAAATCGACCAACCCGgtagataattttttttcatat
tttcatgttttgataagTTCAGGAAATATTTTCCATAAAGATTATTTCAC
ACTCCAAAAATAGTTAAGTTTAaaattcttcatcaaaattgACCCTTCTC
CCGTTTTCGTCGGTAAAAAT
Run BLAST on NCBI

transcript from alignment at sc0001478:8179..13017-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036536 ID=TCONS_00036536|Name=TCONS_00036536|organism=Clytia hemisphaerica|type=transcript|length=4839bp|location=Sequence derived from alignment at sc0001478:8179..13017- (Clytia hemisphaerica)
TCGATAGTATAGAGTACGCATTCTGATCATCACACTTTTAACTTGTTATC
TTATGAGAAGGATGTTGTATGTCGAGGGAAGTCAAGATGAAAAAGTTATG
ATTTTCTAATTTTACAAATCTGGAATTTAGTCAATTGAACTTCAAGTTTA
TTCCAATCACATTCTATCTTTGTGGCATGGTACATTTCATAGCACGTATT
CTTAGGCCAGTCGGTGAGTTTTGGCTTTTTTTATCTTTCTGTGTTTGGCC
TTAGGTTTTTACCTCTTAGTGTCTCTTTATAAGGTAAGGCAGACATAGGG
TCACACCCTCTTCTCATAGACCCGGTAGGATTTTTTTAGCCAGTGGGGGT
AAAAATAATTCGATGGGAATTGTTACTTTTTTACGGTTTGGGATTTGAAT
TGCACTGTTTTCAAGTCAGAAAAAAATTCTGTGGGGTGGAGAAGGTAGCA
CATATAGCCTGGAAATCCAAGCGTTGAACTTTTTCATATTGTTTAGTCTA
GTTTTTTTTGTCTAGTTTTTATATTTTAAGTAATTTCAGAACTTTGTATA
TTGAGGTAATAAAATTTTATTTTTCTAAAATTTAAAGCTTGGATATCCAG
GATAGCACATATTTTGTGGTGAGGATTTACTTGTTCTCAACTTCAGTTGA
TAGAATCTGAGAATGTCTGTTTGTATGTCTGTATGTCACCTAAAAGCTAA
GGGACAGGTTGAAGTCTTCAAAAAAATTCCGATTAGGTTGAAATTTGATT
GAAACTCTGCACACTTGTTCTTTGGTTGAATGTCGGGGTCTGTTTTTTCA
TTTTTGAAAATATTGAACTTTAGGGCAGGCTGGAGACCTCAAAAAAGAAA
TTTGAACATTTTAGAGTCTACTTAGAGAAAGTTATCTTATTTCAAAAATT
TTCTGTTGATGTTTACAATCGGCCTACAAGTAATTTGAAGTTGAGCCAGT
GCACGTTAGCACGTTCAAAAGTTCTATTACCTTCAGCGGATCAAAATTTG
AAGCATAATTTTTCAACCGGGATGACATTTTGGCCAACTTTTCCAGTGGT
AGGGGATTGTCTTTGTGAGAACGGGGTGTTAGGATTTTCATTCAATTTGC
AATTAGTGTTTATCTAAAACTGGAATCTGGCTTTCTGTTGTGATACCACA
TTTGAAGGGTTTCATAGTGTTGCTAGCAACATAGCGGAACCATATTTGAC
CATCTAATATGCAGCTTGCAGTTAAAAAACTTAAAGTTAGTTGGTGATTT
TGTCTTTTTCGAAAAATTCGGTCGATCTGGTCTGTAAAATACATATTAGT
CATGTGATAAACTGAAACTTTTTTTGCATAATAATATTTGACAAATTTTT
CCCTCCTGCAAATTTTCAAAGTATGTACTTGGTGAGATATGACCGTTTTT
TTCAGGCCATAACCCCTTTGGAAAAATTAATTTTGAAGATCCAACTGTTT
TTACTCAGGGCTTCATAGATCTTGGTACTGACACTTAGAAAAGGTCGACC
ATAATTTTTCTGACGCTCCAATACCTAATCTTTCGAGTGGTACACGTTTT
TTGTACATAAGAACAAACTCTATAAGAACATAAGGCTTCAGTGGCCAAAA
TATTAAGAATAAGTTAAACACATTTTATGGCTTTGAGGACCCTATAACAC
TCTACTTCTTAATAAAATAGACAAGAATACCCTCAAAATGGTGAAAATAA
GAACATGTTTAGAACATTTTTAGATTTGAAACTCAAACAGTAAAAAACAA
AATCGAAGGCTTCCAAAACTTTGAATGTTCTTATAAAAAAACGTGTATAT
ATCACCATTACTCCATTTTTGATACCCATTTGGCCCTTATTTCATGAACT
AATTAATCGATCAATTGAATTTTTTTATACTTGTTCCACAGCTTTGTGTC
GACCGTGCCTGTCTCTACGCTTTTTAGGGCGGACCGGAGAGTTTCACAAA
GATGAATTTCACAACTATGAATTACTTATATACACCCTTGTCTCACAGTC
CCGGTGGAACTTTTACCCACAGTGGGGATAAAGATTTCTATCGAAATCCC
AACAGGGGATAGAAATTCTATTGTTTTAAGATTTAACTATCCAGTTGGGA
TGATTTGGGAGTGTACTTTTAACATTGAATTTCTAATGGGAATGAAATCG
AAGTCAACATTTCAATGGGACTGAAATTTGTGAAATTGTAGGGTCTTCAT
CTCACAGGGGACGAAATTTTGGCCAATCTTTTTTATAGTTGTCATGGGTC
TGTGATAGACGGGTGTTTTAATTTTTTTAATTTCTTTTAGTTTCAGAATT
ACCAAAGGGAGATAAACCAAACGAAATTATTAACCTTGAACAACATGAAC
AACAGTCCACCACTTCCCTGATGAAGATTTAAAATCCCAACATCAAACTA
GTTAATGAAATAGAGCACAAAATTTGGTAAATTATTATTTTCATCATTGG
AATTGCACTATATTCCCTTTCTTCCTCGAGATAACAAAGGCAAGGCAAAA
AGTTTTTGAGCAGTGCTCACGCGAAATGTTAGTTATTTACTATGGAACAC
TAAAGAAAAACTTTGGGTACTTATGTACATAAAGACCAGTAAAAATGTTG
ACATCTTTCCTTTGTCTTTCTTCAGTTTGATTCTCAAGAAAGATGACAAG
TTAGGGGCATTTGCTGATATCTGTTTATGACGTTTATAAATCACTGGGTA
TTGTGGTCATGCTATTCTTATAAAGCCTATGGCAACTTTTTAGGTGAGTT
TGAATTATGTCATATTAAGAGCGATTCATTATCTTGAATCTTCAGACGTC
TTCAGAATTTCTAAATTTACTGCTAATATCGAAATGCTAAAGAAAAATAG
CTAGTCTATAAAGTAAAACGATATATCACTGAATGCCTTACCATGTTACA
GAACAAGATTTTTTCAAACATTTTCCTAAATTAGTCTCAAAGTAGTTTGT
ATTCTATAGTGCTATCATCAAGGTGGATCAGCATTTTGTTCCGTTCTAAA
TCATTTCTAAAAATTTTTATTGTTTTTATTAGGTGGAAGTCCAAGAAAAC
ATCAACTGCCAATCGGTCAACTACGTTCAATTATCAACTGCTAGAACTAA
ATTGTGTTAAGGCTTTTCCTAGCTACCATTAACTACAAATTGTAAGTTTT
CAGGTAACAGTCATTATCATTCTCCTCAAAGGCAACTCTGGCTCTCTAAG
GGGGGTTGTACTAGGTTTGCGAGGAGACGGGTATTTGAAAATTGACCCTT
TGAGAGACTAAATTTCGACATTTGTGCGATCCTTTAAGAGACTATTTTTC
CAATACTTAGCTCGAAACTACTAGATTTCATAAACCCCTGAGGAAGCCGA
TTTTTTATATTTTCTAATTTTGGGAATTTCAATTGCAAATTGCAAATTGC
AAATTTATCTTTTTTTGTGCTCCTTTTAGAGACTTGCAAGGGTTTGAAAA
AGGATCCTTATGGTCCCACATACACGACACCCATTTCGCCTGAAGTATCT
CCTCTCTTCCGGGCTCTGGCCTCAGACATCAGAGTCGTTTAGGAATTTAA
ATATACATATAAGTCTGATCATGCAATATGATTATTTATTAGTCTGTTCT
ACCGAACCTTACAATACCGAGTTTATGTATTTGCACTTTTGAGGACGGTA
AAGTGACTAAAGCGATTTGGAAAAACCCGCAGTTCTGACCCACAAAATCG
AGGACGGTAAAAGTGCTGATTTACCGTCGTCCTCAGTTGGTCATGATCCA
GCCAAAGTAGAACCTTACCGTCTCCGTCGCTGAAAAACACACATACATAA
GCTCGGTAATATCAAGTAGAATGGAAGTTTTTACCCGTGAAAAATGGAGA
GATCGTCGAAAGAAATTCTATTTCATTTTTCCTTCGTTATTTTTTTACTT
CCCAGTGTAGGTCAAGTATCTATTCGGAGCCTTGCTATTGATTCTCTAAT
ACTCTAATATTATTCTATATTGCCTTGTGTCTTTTCAGGTTTGACAACGA
TGAAGTGCTGAGGAGAGGTTTTCTTTGAAATTCAAGTAGCGCAATACATC
ATCATATTCTAGGGTCCAGATATTACTTATAATTAAAGACAATTAAAGAC
ATTAACCATAATGGATATCATCACGGAAATCGACCAACCCGGTAGATAAT
TTTTTTCCTATTTTCATGTTTTGATAAGTTCAGGAAATATTTTCCATAAA
GATTATTTCACACTCCAAAAAGAGTTAAGTTTAAAATTCTTCATCAAAAT
TGACCCTTCTCCCGTTTTCGTCGGTAAAAATATCAGTGNCAGTTGGTCAT
GATCCAGCCAAAGTAGAACCTTACCGTCTCCGTCGCTGAAAAACACACAT
ACATAAGCTCGGTAATATCAAGTAGAATGGTAGTTTTTACCCGTGAAAAA
TGGAGAGATCGTCGAAAGAAATTCTATTTCATTTTCTCCTTCATTATTTT
TTTCCTTCCCAGTGTAGGTCAAGTATCTATTCGGAGTCTTGCTATTGATT
CTCTAATACTCTAATATTATTCTATATTGCCTTGCGTCTTTTCAGGTTTG
ACAACGATGAAGTGCTGAGGAGAGGTTTTCTTTGAAATTCAAGTAGCGCA
ATACATCATCATATTCTAGGGTCCAGAAATTACTTATAATTAAAGACAAT
TAAAGACATTAAGCATAATGGATATCATCACGGAAATCGACCAACCCGGT
AGATAATTTTTTTTCATATTTTCATGTTTTGATAAGTTCAGGAAATATTT
TCCATAAAGATTATTTCACACTCCAAAAATAGTTAAGTTTAAAATTCTTC
ATCAAAATTGACCCTTCTCCCGTTTTCGTCGGTAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021551XLOC_021551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036536-exon-sc0001478-1575043694:12805..13017TCONS_00036536-exon-sc0001478-1575043694:12805..13017Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1575043694:10592..10727TCONS_00036536-exon-sc0001478-1575043694:10592..10727Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1575043694:10275..10392TCONS_00036536-exon-sc0001478-1575043694:10275..10392Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1575043694:9877..9985TCONS_00036536-exon-sc0001478-1575043694:9877..9985Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1575043694:8179..8472TCONS_00036536-exon-sc0001478-1575043694:8179..8472Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1510915933:12805..13017TCONS_00036536-exon-sc0001478-1510915933:12805..13017Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1510915933:10592..10727TCONS_00036536-exon-sc0001478-1510915933:10592..10727Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1510915933:10275..10392TCONS_00036536-exon-sc0001478-1510915933:10275..10392Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1510915933:9877..9985TCONS_00036536-exon-sc0001478-1510915933:9877..9985Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1510915933:8179..8472TCONS_00036536-exon-sc0001478-1510915933:8179..8472Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1491911889:12805..13017TCONS_00036536-exon-sc0001478-1491911889:12805..13017Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1491911889:10592..10727TCONS_00036536-exon-sc0001478-1491911889:10592..10727Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1491911889:10275..10392TCONS_00036536-exon-sc0001478-1491911889:10275..10392Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1491911889:9877..9985TCONS_00036536-exon-sc0001478-1491911889:9877..9985Clytia hemisphaericaexon
TCONS_00036536-exon-sc0001478-1491911889:8179..8472TCONS_00036536-exon-sc0001478-1491911889:8179..8472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001478supercontigsc0001478:8179..13017 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.4833	8.95995	3.05292	2.18958	0.479359	0.405722	0	0.159485	0	0.112047	0.163133	0	0	0	0	0	0	0	0	0	0	0	6.27078	8.02814	0.172878	0.30858	0.772175	0.824086	2.27061	2.11708
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top