TCONS_00036535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036535
Unique NameTCONS_00036535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036535 ID=TCONS_00036535|Name=TCONS_00036535|organism=Clytia hemisphaerica|type=transcript|length=329bp
AATTACCTCCCAAGTCATTTCTTTCACTTTCAGAAAAGGGActattaaaa
tttagaaatatgcatttccaaaattttataATTCTGTGTTGTCAAGTTCA
GCATAACCTTTCATCTTATGTCCATGCTGCGATTTTCCTGGTCCATCCTT
ACTATACATGTGCCATCTGGATTCTGAAAATCATTGATAAGTTGAAGATA
GTGTTTGTTGTTCTTTGTACAGCTGGTATAATTTTGAAAGGGTGGCAGGG
TCTGTTGTTGACATTGGAAGGTTTGAATACTTGACTGCGATCTGTCAATT
CATCCAGCTCTCTTGGGCAGCGTTGGGTT
Run BLAST on NCBI

transcript from alignment at sc0001478:24684..25012+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036535 ID=TCONS_00036535|Name=TCONS_00036535|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at sc0001478:24684..25012+ (Clytia hemisphaerica)
AATTACCTCCCAAGTCATTTCTTTCACTTTCAGAAAAGGGActattaaaa
tttagaaatatgcatttccaaaattttataATTCTGTGTTGTCAAGTTCA
GCATAACCTTTCATCTTATGTCCATGCTGCGATTTTCCTGGTCCATCCTT
ACTATACATGTGCCATCTGGATTCTGAAAATCATTGATAAGTTGAAGATA
GTGTTTGTTGTTCTTTGTACAGCTGGTATAATTTTGAAAGGGTGGCAGGG
TCTGTTGTTGACATTGGAAGGTTTGAATACTTGACTGCGATCTGTCAATT
CATCCAGCTCTCTTGGGCAGCGTTGGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021550XLOC_021550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036535-exon-sc0001478-1491911889:24684..25012TCONS_00036535-exon-sc0001478-1491911889:24684..25012Clytia hemisphaericaexon
TCONS_00036535-exon-sc0001478-1510915933:24684..25012TCONS_00036535-exon-sc0001478-1510915933:24684..25012Clytia hemisphaericaexon
TCONS_00036535-exon-sc0001478-1575043694:24684..25012TCONS_00036535-exon-sc0001478-1575043694:24684..25012Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001478supercontigsc0001478:24684..25012 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.29617	4.65139	0.974773	0	1.38293	1.0879	0.760177	1.94467	1.41591	0.512778	0	3.64288	0.786476	0.135813	0	0.511542	0	1.17191	0	0.779821	0	0	1.92199	2.24183	0.317413	4.20136	14.26	6.77988	1.48553	2.30798
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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