TCONS_00036534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036534
Unique NameTCONS_00036534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036534 ID=TCONS_00036534|Name=TCONS_00036534|organism=Clytia hemisphaerica|type=transcript|length=1215bp
ATTTTGGCAAGGAAATCTCTTAGGAGAGCTATAACAAACAGAGAACTTTG
GAGAGCACGGTAATAATTAATTGGAAAGTGGTGGAATTTTAAGTTATTTT
GAGAGTGAATTTTTAAGGAGATTTGAACATGTGTGAACCAGTGGTATTTC
GGAACAGAAGTTATCGAGGAGAGATGTAATAAACCAGACTTAACAGAGAG
TTTTACAGAGATGTAAGTAATTTACTGGGGAAGCTGGCTGCTTTTGGAGT
CTATGGAATGAATGGTCTGCGAAAAGTTTAACAAACTATGAAACTGTGGA
GAGAAGTGGTCATTACTTATTGAGAAATCTCGTGGTATTTTGGAACAGAA
CTTTTCATGGAGAAATGTGACTAATAGATAAGACAGAAAAATGTTTGTAG
TATGTGCTGAATTTCAAAACCCTCTTTCTGGTACTTGAAAGAAGGAGAAC
AGCTAGCAGAGTTGTATAATTCTTGTTATTAATACAATTTTCCTGTCCAG
ATGGACAAGAGGAAATATTGGTTTACATGTTAATTGCATAGTTACATACT
GACGACATTGTGAGAAGGACCTATGCTAAGATAGAGAGACCACATTGATT
ACGGAAGCCTATCGaatagaattttcaagattCTTCGATGATAtcagaaa
aaagatttattcattttttctcacatcatcaaagttttgaaacttttgtg
aAACACATCTTTTGGTCAGAATATGAAATGCTATTTGTATGTCTATTTTG
TAACTTTTATCAAAGGCCATGATTTTTGTTATGTGGTTTTTTAGGCAAAA
ACAACATCAAATTACCAGGCATTTGCTTGTCCACTTTTTGTTGACTAATG
CTTTCCTAATAGGAGACAGAtgcattgtttgttttttgaaaaaattacct
CCCAAGTCATTTCTTTCACTTTCAGAATAGGGActattaaaatttagaaa
tatgcatttccaaaattttaaaattctgtGTTGTCAAGTTCAGCATAGCC
TTTCATCTTATGTCCATGCTGCGATTTTCCTGGTCTGCCCTTACATGTGT
CATCTGGATTCTGAAAATCATTGATAAGTTGAAGATAGTGTTTGTTGTTC
TTTGTACAGCTGGTATGATTTTGAAAGGGTGGCAGGGTCTGTTGTTGACA
TTGGAAGGTTTGAATACTTGACTGCGATCTGTCAATTCATCCAGCTCTCT
TGGGCAGCGTTGGGT
Run BLAST on NCBI

transcript from alignment at sc0001478:23265..25011+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036534 ID=TCONS_00036534|Name=TCONS_00036534|organism=Clytia hemisphaerica|type=transcript|length=1747bp|location=Sequence derived from alignment at sc0001478:23265..25011+ (Clytia hemisphaerica)
ATTTTGGCAAGGAAATCTCTTAGGAGAGCTATAACAAACAGAGAACTTTG
GAGAGCACGGTAATAATTAATTGGAAAGTGGTGGAATTTTAAGTTATTTT
GAGAGTGAATTTTTAAGGAGATTTGAACATGTGTGAACCAGTGGTATTTC
GGAACAGAAGTTATCGAGGAGAGATGTAATAAACCAGACTTAACAGAGAG
TTTTACAGAGATGTAAGTAATTTACTGGGGAAGCTGGCTGCTTTTGGAGT
CTATGGAATGAATGGTCTGCGAAAAGTTTAACAAACTATGAAACTGTGGA
GAGAAGTGGTCATTACTTATTGAGAAATCTCGTGGTATTTTGGAACAGAA
CTTTTCATGGAGAAATGTGACTAATAGATAAGACAGAAAAATGTTTGTAG
TATGTGCTGAATTTCAAAACCCTCTTTCTGGTACTTGAAAGAAGGAGAAC
AGCTAGCAGAGTTGTATAATTCTTGTTATTAATACAATTTTCCTGTCCAG
ATGGACAAGAGGAAATATTGGTTTACATGTTAATTGCATAGTTACATACT
GACGACATTGTGAGAAGGACCTATGCTAAGATAGAGAGACCACATTGATT
ACGGAAGCCTATCGaatagaattttcaagattCTTCGATGATAtcagaaa
aaagatttattcattttttctcacatcatcaaagttttgaaacttttgtg
aAACACATCTTTTGGTCAGAATATGAAATGCTATTTGTATGTCTATTTTG
TAACTTTTATCAAAGGCCATGATTTTTGTTATGTGGTTTTTTAGGCAAAA
ACAACATCAAATTACCAGGCATTTGCTTGTCCACTTTTTGTTGACTAATG
CTTTCCTAATAGGAGACAGAtgcattgtttgttttttgaaaaaattacct
CCCAAGTCATTTCTTTCACTTTCAGAATAGGGActattaaaatttagaaa
tatgcatttccaaaattttaaaattctgtGTTGTCAAGTTCAGCATAGCC
TTTCATCTTATGTCCATGCTGCGATTTTCCTGGTCTGCCCTTACATGTGT
CATCTGGATTCTGAAAATCATTGATAAGTTGAAGATAGTGTTTGTTGTTC
TTTGTACAGCTGGTATGATTTTGAAAGGGTGGCAGGGTCTGTTGTTGACA
TTGGAATACTTGACTGCGATCTGTCAATTCATCCAGCTCTCTTGGGCAGC
GTTGGGTTGACTCTGCACAAACATTCATGGTGCTCTTAATCCAGACTGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAGAATTACCTCCCAAGTCATTTCTTTCACTTTC
AGAAAAGGGActattaaaatttagaaatatgcatttccaaaattttataA
TTCTGTGTTGTCAAGTTCAGCATAACCTTTCATCTTATGTCCATGCTGCG
ATTTTCCTGGTCCATCCTTACTATACATGTGCCATCTGGATTCTGAAAAT
CATTGATAAGTTGAAGATAGTGTTTGTTGTTCTTTGTACAGCTGGTATAA
TTTTGAAAGGGTGGCAGGGTCTGTTGTTGACATTGGAAGGTTTGAATACT
TGACTGCGATCTGTCAATTCATCCAGCTCTCTTGGGCAGCGTTGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021550XLOC_021550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036534-exon-sc0001478-1491911889:23265..24413TCONS_00036534-exon-sc0001478-1491911889:23265..24413Clytia hemisphaericaexon
TCONS_00036534-exon-sc0001478-1510915933:23265..24413TCONS_00036534-exon-sc0001478-1510915933:23265..24413Clytia hemisphaericaexon
TCONS_00036534-exon-sc0001478-1575043694:23265..24413TCONS_00036534-exon-sc0001478-1575043694:23265..24413Clytia hemisphaericaexon
TCONS_00036534-exon-sc0001478-1491911889:24946..25011TCONS_00036534-exon-sc0001478-1491911889:24946..25011Clytia hemisphaericaexon
TCONS_00036534-exon-sc0001478-1510915933:24946..25011TCONS_00036534-exon-sc0001478-1510915933:24946..25011Clytia hemisphaericaexon
TCONS_00036534-exon-sc0001478-1575043694:24946..25011TCONS_00036534-exon-sc0001478-1575043694:24946..25011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001478supercontigsc0001478:23265..25011 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.984512	1.67308	0.2833	0.312523	0.412151	0.682559	0.956176	1.19552	0.741504	1.03709	0.597331	0.819232	0.282456	0.345503	0.696378	0.707162	1.61483	1.2803	0.388366	0.547971	1.67411	1.11672	1.09073	0.824309	0.798619	1.05971	10.3568	7.39723	1.12253	0.624589
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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