TCONS_00036528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036528
Unique NameTCONS_00036528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036528 ID=TCONS_00036528|Name=TCONS_00036528|organism=Clytia hemisphaerica|type=transcript|length=423bp
TTCGCCAAATCCTTGTCAAGATGTTTTTCGTTTTCACCAACCACGTAAAC
AAACATCAAGCTATGATTGGGATAAATACAAACGATTGTGTTGTCATAGT
GATCAGGCTTTTCAGAAAAATGCAGAACACTCTCGATCTTTTCATCATTG
AGTCCAAGTATTCTGAGATGGCTTATGGGATTATATCCGACGAGAATCTT
TCCTCCAAGAAGTGATGAATGTTCTTCAAGACTGGCGATAACTTCTTTCA
TGTTTACATTTCGTACGTAATACGAGGGTGGGAAGGTTTTGATGTCGATA
TGGTCTTTGTAATACTGCAGTGCTCTTTGATTGAATTCTTTGACAGTGTT
GGCAACTGAAGGACCGGTGCTGATTGGGATACATGTATCGTCATCTGTGA
TTCCATTCTCGTCCGAAACTTNN
Run BLAST on NCBI

protein sequence of TCONS_00036528-protein

>TCONS_00036528-protein ID=TCONS_00036528-protein|Name=TCONS_00036528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
XVSDENGITDDDTCIPISTGPSVANTVKEFNQRALQYYKDHIDIKTFPPS
YYVRNVNMKEVIASLEEHSSLLGGKILVGYNPISHLRILGLNDEKIESVL
HFSEKPDHYDNTIVCIYPNHSLMFVYVVGENEKHLDKDLA
Run BLAST on NCBI

transcript from alignment at sc0001477:10601..11023

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036528 ID=TCONS_00036528|Name=TCONS_00036528|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at sc0001477:10601..11023 (Clytia hemisphaerica)
NNAAGTTTCGGACGAGAATGGAATCACAGATGACGATACATGTATCCCAA
TCAGCACCGGTCCTTCAGTTGCCAACACTGTCAAAGAATTCAATCAAAGA
GCACTGCAGTATTACAAAGACCATATCGACATCAAAACCTTCCCACCCTC
GTATTACGTACGAAATGTAAACATGAAAGAAGTTATCGCCAGTCTTGAAG
AACATTCATCACTTCTTGGAGGAAAGATTCTCGTCGGATATAATCCCATA
AGCCATCTCAGAATACTTGGACTCAATGATGAAAAGATCGAGAGTGTTCT
GCATTTTTCTGAAAAGCCTGATCACTATGACAACACAATCGTTTGTATTT
ATCCCAATCATAGCTTGATGTTTGTTTACGTGGTTGGTGAAAACGAAAAA
CATCTTGACAAGGATTTGGCGAA

Coding sequence (CDS) from alignment at sc0001477:10601..11023

>TCONS_00036528 ID=TCONS_00036528|Name=TCONS_00036528|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0001477:10601..11023 (Clytia hemisphaerica)
NAAGTTTCGGACGAGAATGGAATCACAGATGACGATACATGTATCCCAAT
CAGCACCGGTCCTTCAGTTGCCAACACTGTCAAAGAATTCAATCAAAGAG
CACTGCAGTATTACAAAGACCATATCGACATCAAAACCTTCCCACCCTCG
TATTACGTACGAAATGTAAACATGAAAGAAGTTATCGCCAGTCTTGAAGA
ACATTCATCACTTCTTGGAGGAAAGATTCTCGTCGGATATAATCCCATAA
GCCATCTCAGAATACTTGGACTCAATGATGAAAAGATCGAGAGTGTTCTG
CATTTTTCTGAAAAGCCTGATCACTATGACAACACAATCGTTTGTATTTA
TCCCAATCATAGCTTGATGTTTGTTTACGTGGTTGGTGAAAACGAAAAAC
ATCTTGACAAGGATTTGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021544XLOC_021544Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036528-proteinTCONS_00036528-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036528-exon-sc0001477-1491911889:10601..11023TCONS_00036528-exon-sc0001477-1491911889:10601..11023Clytia hemisphaericaexon
TCONS_00036528-exon-sc0001477-1510915933:10601..11023TCONS_00036528-exon-sc0001477-1510915933:10601..11023Clytia hemisphaericaexon
TCONS_00036528-exon-sc0001477-1575043694:10601..11023TCONS_00036528-exon-sc0001477-1575043694:10601..11023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001477supercontigsc0001477:10601..11023 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00069	0.533327	0.266873	0	3.04635	1.10363	2.70805	3.43816	2.731	6.55646	3.89077	2.37146	9.40675	8.17807	3.77965	5.68177	2.465	4.37297	10.9508	14.4336	7.23344	6.44682	2.72189	6.24054	2.18004	1.33667	20.7201	17.8335	10.6039	5.71015
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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