TCONS_00036526 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036526
Unique NameTCONS_00036526
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036526 ID=TCONS_00036526|Name=TCONS_00036526|organism=Clytia hemisphaerica|type=transcript|length=311bp
AAAAGGGTGATGTCGAAAAGTTTTGACGATGTTTCTTGTTTCCCAGGAGG
TAAAAGAAGTTCATACTGGTCTTTcttcaaaatgttctttttgAGCAACT
TGTCCAGTGTTGTTTTATTTGCAAGAAAAAACTGATACAGCTTTTTCTCA
TCAATAGGAAGACCTTGATAGGCAGGATCGTGTAAGATCTGCAGCAAGGC
CCTCATCCCATGAAAAGTGAGGGCAAAAATGCATTTTGTCCACTCTTTAT
TCTTGCCGACGATTTTAGAGAATTGACTTcccatttttctatttttttct
ttattaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00036526-protein

>TCONS_00036526-protein ID=TCONS_00036526-protein|Name=TCONS_00036526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
IFNKEKNRKMGSQFSKIVGKNKEWTKCIFALTFHGMRALLQILHDPAYQG
LPIDEKKLYQFFLANKTTLDKLLKKNILKKDQYELLLPPGKQETSSKLFD
ITL
Run BLAST on NCBI

transcript from alignment at sc0001477:3606..3916

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036526 ID=TCONS_00036526|Name=TCONS_00036526|organism=Clytia hemisphaerica|type=transcript|length=311bp|location=Sequence derived from alignment at sc0001477:3606..3916 (Clytia hemisphaerica)
atttttaataaagaaaaaaatagaaaaatgggAAGTCAATTCTCTAAAAT
CGTCGGCAAGAATAAAGAGTGGACAAAATGCATTTTTGCCCTCACTTTTC
ATGGGATGAGGGCCTTGCTGCAGATCTTACACGATCCTGCCTATCAAGGT
CTTCCTATTGATGAGAAAAAGCTGTATCAGTTTTTTCTTGCAAATAAAAC
AACACTGGACAAGTTGCTcaaaaagaacattttgaagAAAGACCAGTATG
AACTTCTTTTACCTCCTGGGAAACAAGAAACATCGTCAAAACTTTTCGAC
ATCACCCTTTT

Coding sequence (CDS) from alignment at sc0001477:3606..3916

>TCONS_00036526 ID=TCONS_00036526|Name=TCONS_00036526|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0001477:3606..3916 (Clytia hemisphaerica)
atttttaataaagaaaaaaatagaaaaatgggAAGTCAATTCTCTAAAAT
CGTCGGCAAGAATAAAGAGTGGACAAAATGCATTTTTGCCCTCACTTTTC
ATGGGATGAGGGCCTTGCTGCAGATCTTACACGATCCTGCCTATCAAGGT
CTTCCTATTGATGAGAAAAAGCTGTATCAGTTTTTTCTTGCAAATAAAAC
AACACTGGACAAGTTGCTcaaaaagaacattttgaagAAAGACCAGTATG
AACTTCTTTTACCTCCTGGGAAACAAGAAACATCGTCAAAACTTTTCGAC
ATCACCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021542XLOC_021542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036526-exon-sc0001477-1491911889:3606..3916TCONS_00036526-exon-sc0001477-1491911889:3606..3916Clytia hemisphaericaexon
TCONS_00036526-exon-sc0001477-1510915933:3606..3916TCONS_00036526-exon-sc0001477-1510915933:3606..3916Clytia hemisphaericaexon
TCONS_00036526-exon-sc0001477-1575043694:3606..3916TCONS_00036526-exon-sc0001477-1575043694:3606..3916Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036526-proteinTCONS_00036526-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001477supercontigsc0001477:3606..3916 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.468876	0	0.447007	1.14275	0.0638394	0	0.104791	0.231558	4.88803	4.08392	1.28942	1.09632	0.621272	0.50558	7.31557	8.18863	2.24393	0	0	0	3.95945	3.1872	0.779662	0.430326	2.07942	1.31532
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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