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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036522 ID=TCONS_00036522|Name=TCONS_00036522|organism=Clytia hemisphaerica|type=transcript|length=317bp
TTTGGAAGGTGAAATCGAAAGTTCACCCTGCTCCTTAAACTTAGAAGTTC
GATCGAAAGGAAACGCTTTGCTGACAAAAGACGATGAATATAGCAAGGTC
ATAATCCAGGAAATCCAATCAAATGGAGATGGCGAAAATAGACCAGATGA
CTCTCAGTCAACAACAAAAGTCAAATTTCAGGTTAACGAGCGAAAGGAAG
ATCGAGAAGCAAGCGAATCATTTGACCCAACGAAGCTACGCGACCCCGAA
AACGTTTTTAAGTCGCAGCCACAgatgaatgaaaatgaagaagtcaTGAA
AGAACTGTCCACTACAT Run BLAST on NCBI protein sequence of TCONS_00036522-protein >TCONS_00036522-protein ID=TCONS_00036522-protein|Name=TCONS_00036522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
LEGEIESSPCSLNLEVRSKGNALLTKDDEYSKVIIQEIQSNGDGENRPDD
SQSTTKVKFQVNERKEDREASESFDPTKLRDPENVFKSQPQMNENEEVMK
ELSTT Run BLAST on NCBI transcript from alignment at sc0001477:11775..12964+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036522 ID=TCONS_00036522|Name=TCONS_00036522|organism=Clytia hemisphaerica|type=transcript|length=1190bp|location=Sequence derived from alignment at sc0001477:11775..12964+ (Clytia hemisphaerica)
TTTGGAAGGTGAAATCGAAAGTTCACCCTGCTCCTTAAACTTAGAAGTTC
GATCGAAAGGTATAACATACCATTTACGTAACATTCTTTTATAATCGTGT
TCAATTGCAACGGTGTGCAAGTAAAAATGCTCATTTTTTTAATTACCGAA
ACATCTTtgacattttaattttaatcttTCAGGAAACGCTTTGCTGACAA
AAGACGATGAATATAGCAAGGTCATAATCCAGGAAATCCAATCAAATGGA
GATGGCGAAAATAGACCAGATGACTCTCAGTCAACAACAAAAGTCAAATT
TCAGGTTAACGAGGTATTTTTGTTAATGAGTGCACTGTTTACAATTAGCT
TACCATTGAAATTGAATAATGAAGCTATTATCTCTTTGTTGgaaccgttt
ttttttaagaaattcttcagacagattttttttgattttgttttttcaga
CTAGAACACTTTTCGTGTTGGATATTACagcttattttttaaattccGTT
CAAATGATCTGATTCGGAGGTAATTTGCTTCTCTATAACTTGTGAAATAA
ACGTGCTCTCCTTGGCAACACGCCCTCCTCATAAACCCGTTAGCAGGATC
TTTCAGACAGTTGGGGTTAAATAAAGGACCAAAACTCAATTGGGAAGATT
GATATATCCCATGTTTTCGAGCTAGAAAATTCAgtaaaaaatagcacaat
attttgcagtgacaATTTGCTTTTCTGATTATTTTATGGAGGacaaaatt
agagtataattttcgaTTGAGGAcgatattttcatcaatttatcCAATAA
GAAGTCGtcatactgggtctgtgagaagggggtgatTGCCATTGATTCCA
AAGCCCCCGAAATGAATAATTCCGAAACTCCTTGATGggaagtgaagcca
cttatttcaactgcagaaagaaaaacaagcatgaactttttaatttttgt
tataaTCCATAAACAAGCAGTTTTTTTTAGTCTTTTATAtctagattttc
ttttcaattaaaccTTACCTTTATGTTTTaacgagaaatttcaaattact
tCCCATTTATTAGCGAAAGGAAGATCGAGAAGCAAGCGAATCATTTGACC
CAACGAAGCTACGCGACCCCGAAAACGTTTTTAAGTCGCAGCCACAgatg
aatgaaaatgaagaagtcaTGAAAGAACTGTCCACTACAT Coding sequence (CDS) from alignment at sc0001477:11775..12964+ >TCONS_00036522 ID=TCONS_00036522|Name=TCONS_00036522|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at sc0001477:11775..12964+ (Clytia hemisphaerica)
TTGGAAGGTGAAATCGAAAGTTCACCCTGCTCCTTAAACTTAGAAGTTCG
ATCGAAAGGAAACGCTTTGCTGACAAAAGACGATGAATATAGCAAGGTCA
TAATCCAGGAAATCCAATCAAATGGAGATGGCGAAAATAGACCAGATGAC
TCTCAGTCAACAACAAAAGTCAAATTTCAGGTTAACGAGCGAAAGGAAGA
TCGAGAAGCAAGCGAATCATTTGACCCAACGAAGCTACGCGACCCCGAAA
ACGTTTTTAAGTCGCAGCCACAgatgaatgaaaatgaagaagtcaTGAAA
GAACTGTCCACTACATTGGAAGGTGAAATCGAAAGTTCACCCTGCTCCTT
AAACTTAGAAGTTCGATCGAAAGGAAACGCTTTGCTGACAAAAGACGATG
AATATAGCAAGGTCATAATCCAGGAAATCCAATCAAATGGAGATGGCGAA
AATAGACCAGATGACTCTCAGTCAACAACAAAAGTCAAATTTCAGGTTAA
CGAGCGAAAGGAAGATCGAGAAGCAAGCGAATCATTTGACCCAACGAAGC
TACGCGACCCCGAAAACGTTTTTAAGTCGCAGCCACAgatgaatgaaaat
gaagaagtcaTGAAAGAACTGTCCACTACATTGGAAGGTGAAATCGAAAG
TTCACCCTGCTCCTTAAACTTAGAAGTTCGATCGAAAGGAAACGCTTTGC
TGACAAAAGACGATGAATATAGCAAGGTCATAATCCAGGAAATCCAATCA
AATGGAGATGGCGAAAATAGACCAGATGACTCTCAGTCAACAACAAAAGT
CAAATTTCAGGTTAACGAGCGAAAGGAAGATCGAGAAGCAAGCGAATCAT
TTGACCCAACGAAGCTACGCGACCCCGAAAACGTTTTTAAGTCGCAGCCA
CAgatgaatgaaaatgaagaagtcaTGAAAGAACTGTCCACTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036522-exon-sc0001477-1491911889:11775..11833 | TCONS_00036522-exon-sc0001477-1491911889:11775..11833 | Clytia hemisphaerica | exon |
| TCONS_00036522-exon-sc0001477-1510915933:11775..11833 | TCONS_00036522-exon-sc0001477-1510915933:11775..11833 | Clytia hemisphaerica | exon |
| TCONS_00036522-exon-sc0001477-1575043694:11775..11833 | TCONS_00036522-exon-sc0001477-1575043694:11775..11833 | Clytia hemisphaerica | exon |
| TCONS_00036522-exon-sc0001477-1491911889:11957..12087 | TCONS_00036522-exon-sc0001477-1491911889:11957..12087 | Clytia hemisphaerica | exon |
| TCONS_00036522-exon-sc0001477-1510915933:11957..12087 | TCONS_00036522-exon-sc0001477-1510915933:11957..12087 | Clytia hemisphaerica | exon |
| TCONS_00036522-exon-sc0001477-1575043694:11957..12087 | TCONS_00036522-exon-sc0001477-1575043694:11957..12087 | Clytia hemisphaerica | exon |
| TCONS_00036522-exon-sc0001477-1491911889:12838..12964 | TCONS_00036522-exon-sc0001477-1491911889:12838..12964 | Clytia hemisphaerica | exon |
| TCONS_00036522-exon-sc0001477-1510915933:12838..12964 | TCONS_00036522-exon-sc0001477-1510915933:12838..12964 | Clytia hemisphaerica | exon |
| TCONS_00036522-exon-sc0001477-1575043694:12838..12964 | TCONS_00036522-exon-sc0001477-1575043694:12838..12964 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001477 | supercontig | sc0001477:11775..12964 + |
Blast
The following BLAST results are available for this feature:
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