TCONS_00036521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036521
Unique NameTCONS_00036521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036521 ID=TCONS_00036521|Name=TCONS_00036521|organism=Clytia hemisphaerica|type=transcript|length=393bp
GGACTTCAAAGATGAAATTGATCAACAAAGTCAAGATTTGTTGGACTTGA
GGGaggatttaaaaaacaaaattgatcAAGAAAAGCAAGATATATTACTT
AATATTTTGGATCAAGTGGACAAAAAgattaaagaaaacaaagagCGAGA
AATGAAAGAGATCATTGAACCAGATTTGTTCAGGGTCGAGAAGATTACAC
CAAAAGATGTTGCATTCACAACTGAAGAAGCTTCCATTATCTACACTGTT
CAATGTTGGAAGATTAAAAATGaaacgaaaatgaaacaatCTGTCAAAAA
TGTAACATCAACAAACATAAACCAAAAGGCTTGGATACAGTGTGAAGTGG
ATATCAAAAGTGGATATACATATGAATTCATTTTCAATACTGA
Run BLAST on NCBI

protein sequence of TCONS_00036521-protein

>TCONS_00036521-protein ID=TCONS_00036521-protein|Name=TCONS_00036521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
DFKDEIDQQSQDLLDLREDLKNKIDQEKQDILLNILDQVDKKIKENKERE
MKEIIEPDLFRVEKITPKDVAFTTEEASIIYTVQCWKIKNETKMKQSVKN
VTSTNINQKAWIQCEVDIKSGYTYEFIFNT
Run BLAST on NCBI

transcript from alignment at sc0001477:4805..10219+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036521 ID=TCONS_00036521|Name=TCONS_00036521|organism=Clytia hemisphaerica|type=transcript|length=5415bp|location=Sequence derived from alignment at sc0001477:4805..10219+ (Clytia hemisphaerica)
GGACTTCAAAGATGAAATTGATCAACAAAGTCAAGATTTGTTGGACTTGA
GGGaggatttaaaaaacaaaattgatcAAGAAAAGCAAGATATATTACTT
AATATTTTGGATCAAGTGGACAAAAAgattaaagaaaacaaagagCGAGA
AATGAAAGAGATCATTGAACCAGATTTGTTCAGGTAAGTGGATTTTTGAT
TCTATACTCTTTACTACCGCGAGAATCGCATTTTTGGCTCTTTCAAATAT
TAACCTTTGACTAAAAAAACCAGGGTTTGTGAAAAGAGGACGGGAAATGA
ACTAATTAATCGTTATAAATACAAAGTAAAACTATCAAATCTctttcaag
gggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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acaacatatttgcgtctaaaggaaatattttaacaccaaaattatataaa
aattgcatataactcactctagctccttggatattgaaaataagttatgt
aAACGGGGTATAgcaaactttctacacctaatgccgttcagaaaatgcaa
atacatctgtgactttagaggctgggtaatagatatagcatcttgaagga
caaccagtattttggagccctagaatcagcattgacaaaaccgaaaattc
taaatgtgagaaaaagcaaaaaatcttggaNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNGCAataaagttaattggtaacttctttataatc
tagctaatttacaagtttttttgtgtacaatatagcattattaaataaaa
atctaactgcgccccataTCAATttgcaatattgaaatcatgaaacatca
attttttcgctcgcttcgctcgcatttacACATtctttctttaagtttct
tttcactctaacCAGTAtgaaatttgtctatttttatttacttatttagg
GTATCCtggcagtcgattttcaaaaattttctagtcccccaaccatggtg
ggcctgTTTttcccacagatatctgtaaagctcgaagggctagataggca
actttaagctttctccagcaaaaaaaagtgaagcaaaaatttgacttttt
aaatttcgtgccgatggataggatctNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcgagatcaaaaaaagt
aggcggcaaacgctatttcacatctctcaaaccggtgaaattgcatattt
tagtcacgtggctttggtaggaaatccttccaaaacTAGGCTTcaatttt
cgataaaagccgcaaatctagcccttcgggctttacagatctgtggtttT
TCCcctttccattcatcaaagatatatctactcttatccactaaatattt
ccttcctcattatgcctaggcaaacgAATTAGTAAGAGTTCAGCAACTGA
TGGGTGGGGgcgccactttggaaaattgggggcgccatttaaaaaaaatt
gactttggcccctccagaaaaattttcccacaacgccactgctgaaagcc
gttttttgactaattcattatgggcatgaaatcctgaaaattacaaatat
tgttttgggaatggaTTTCTAGCAAGTTTTTGATCAATCGAATCACAGTT
CAGCACCTAAATTACAATTTCAAagtttcagtaagttgtgaGCAATGGTT
TATgattgtaggttttaaggtgtaatttgattttaacgtacagttttgaa
aGAATTTAGGTACAAATGATCTAATTGTAGCATtagtaactttgcagtga
atcactgttcaaaatttgagaccaaaaggactatttttatttgttttaag
ggttaaatagctaaaattgcttttttcacgaagcaataaatattttctta
gcagcttttacaaaaaaccaCACCCAGGGAAGAAATTCATAGGTAGCCTT
GACTCGCCAATAAAAAGTTTCCACCCTTACTGTTTTCTCTGATCAGGATA
gagggggtaccttttttgttgtaggttttcaggggtatccactggtattc
AATGTAAAGTCGACTCTtggagattttgtaaatctattaattttcaaatg
tcCGTTTCCTGAAAAGCTTTCAAAATATCATAATTCAAGACATTTTAATT
CAatggaaagtttgaaaatatagtaaatatgatatttaaggttgtttaaa
aaatgatagAACATTAAATTTACAACAAATTTACTGATAAGAGATGTGAC
TtcttttccaaatctctttgaAATGTAATGAAAAGCTCATATTTACACTA
TATTTACGATTTGGGAAATCTATGATTTCACCCAATGTAACActttaaaa
ttgtatcatatTTTAATCCTCTACACGTAGTAAAGTATAGTACAGCGCTT
AGGCAGATATCAGAAAAGACTCTTGTAAATAGATAAACTGTAATAAGTTA
ATAGCTCCTGAACTCCTGAAATGGGAGACGGGTGATCATCCGTGATCTAA
CAACCTGTGAATGGTTACGCAGAGCCGCCCTTTTTAAATCATGATATCAC
GAGACTATGAAGCGCCGATGGAAACAATAATAAATTAATTTATGATCTTT
TGAAGGGTCGAGAAGATTACACCAAAAGATGTTGCATTCACAACTGAAGA
AGCTTCCATTATCTACACTGTTCAATGTTGGAAGATTAAAAATGaaacga
aaatgaaacaatCTGTCAAAAATGTAACATCAACAAACATAAACCAAAAG
GCTTGGATACAGTGTGAAGTGGATATCAAAAGTGGATATACATATGAATT
CATTTTCAATACTGA

Coding sequence (CDS) from alignment at sc0001477:4805..10219+

>TCONS_00036521 ID=TCONS_00036521|Name=TCONS_00036521|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at sc0001477:4805..10219+ (Clytia hemisphaerica)
GACTTCAAAGATGAAATTGATCAACAAAGTCAAGATTTGTTGGACTTGAG
GGaggatttaaaaaacaaaattgatcAAGAAAAGCAAGATATATTACTTA
ATATTTTGGATCAAGTGGACAAAAAgattaaagaaaacaaagagCGAGAA
ATGAAAGAGATCATTGAACCAGATTTGTTCAGGGTCGAGAAGATTACACC
AAAAGATGTTGCATTCACAACTGAAGAAGCTTCCATTATCTACACTGTTC
AATGTTGGAAGATTAAAAATGaaacgaaaatgaaacaatCTGTCAAAAAT
GTAACATCAACAAACATAAACCAAAAGGCTTGGATACAGTGTGAAGTGGA
TATCAAAAGTGGATATACATATGAATTCATTTTCAATACTGACTTCAAAG
ATGAAATTGATCAACAAAGTCAAGATTTGTTGGACTTGAGGGaggattta
aaaaacaaaattgatcAAGAAAAGCAAGATATATTACTTAATATTTTGGA
TCAAGTGGACAAAAAgattaaagaaaacaaagagCGAGAAATGAAAGAGA
TCATTGAACCAGATTTGTTCAGGGTCGAGAAGATTACACCAAAAGATGTT
GCATTCACAACTGAAGAAGCTTCCATTATCTACACTGTTCAATGTTGGAA
GATTAAAAATGaaacgaaaatgaaacaatCTGTCAAAAATGTAACATCAA
CAAACATAAACCAAAAGGCTTGGATACAGTGTGAAGTGGATATCAAAAGT
GGATATACATATGAATTCATTTTCAATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021538XLOC_021538Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036521-proteinTCONS_00036521-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036521-exon-sc0001477-1491911889:4805..4987TCONS_00036521-exon-sc0001477-1491911889:4805..4987Clytia hemisphaericaexon
TCONS_00036521-exon-sc0001477-1510915933:4805..4987TCONS_00036521-exon-sc0001477-1510915933:4805..4987Clytia hemisphaericaexon
TCONS_00036521-exon-sc0001477-1575043694:4805..4987TCONS_00036521-exon-sc0001477-1575043694:4805..4987Clytia hemisphaericaexon
TCONS_00036521-exon-sc0001477-1491911889:10010..10219TCONS_00036521-exon-sc0001477-1491911889:10010..10219Clytia hemisphaericaexon
TCONS_00036521-exon-sc0001477-1510915933:10010..10219TCONS_00036521-exon-sc0001477-1510915933:10010..10219Clytia hemisphaericaexon
TCONS_00036521-exon-sc0001477-1575043694:10010..10219TCONS_00036521-exon-sc0001477-1575043694:10010..10219Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001477supercontigsc0001477:4805..10219 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.26002	0	0.495785	0.696222	1.15962	2.21384	1.36742	0.128413	2.05391	4.18288	0.864727	2.41117	0.289489	1.71509	8.18468	9.04131	5.08831	2.45513	3.04522	2.67698	1.56151	0.215887	8.77597	14.2394	8.00169	7.00498
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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