TCONS_00036520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036520
Unique NameTCONS_00036520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036520 ID=TCONS_00036520|Name=TCONS_00036520|organism=Clytia hemisphaerica|type=transcript|length=212bp
tgatgatgaaattgTCAAGTCATTTCTTTCTTTGTagttcaaattatttt
tgatgtACAATCCAACACCTGCATTTTGACTTTTCCCACTTTTGGCTTCA
AGTGGGTGATAGCCATCCAGTGTGGGTTTAGAAACTGGGCTGTTGTCGCT
ATCCCAGGTTTCAGAGATACCTATAACGTCAAACTCATACTTCAAGATTG
TTAATAAGTTAA
Run BLAST on NCBI

transcript from alignment at sc0001476:55796..56007

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036520 ID=TCONS_00036520|Name=TCONS_00036520|organism=Clytia hemisphaerica|type=transcript|length=212bp|location=Sequence derived from alignment at sc0001476:55796..56007 (Clytia hemisphaerica)
TTAACTTATTAACAATCTTGAAGTATGAGTTTGACGTTATAGGTATCTCT
GAAACCTGGGATAGCGACAACAGCCCAGTTTCTAAACCCACACTGGATGG
CTATCACCCACTTGAAGCCAAAAGTGGGAAAAGTCAAAATGCAGGTGTTG
GATTGTacatcaaaaataatttgaactACAAAGAAAGAAATGACTTGAca
atttcatcatca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021537XLOC_021537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036520-exon-sc0001476-1491911889:55796..56007TCONS_00036520-exon-sc0001476-1491911889:55796..56007Clytia hemisphaericaexon
TCONS_00036520-exon-sc0001476-1510915933:55796..56007TCONS_00036520-exon-sc0001476-1510915933:55796..56007Clytia hemisphaericaexon
TCONS_00036520-exon-sc0001476-1575043694:55796..56007TCONS_00036520-exon-sc0001476-1575043694:55796..56007Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001476supercontigsc0001476:55796..56007 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.36373	1.58342	0	1.88591	0	0	0	4.71385	1.45972	7.08418	4.65686	0.930078	2.89768	0.794097	2.55656	14.6976	5.38018	0	4.66687	0	1.97855	0	0	0	2.68006	1.91758	2.04649	1.55219	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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