TCONS_00036519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036519
Unique NameTCONS_00036519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036519 ID=TCONS_00036519|Name=TCONS_00036519|organism=Clytia hemisphaerica|type=transcript|length=833bp
GTTTGAGGTTCTGGGATGGAAATGATAATTTGGAAACATCTGGATTGACT
TGGAGTCTATTCTGGTAGAGCTTGAATTGCTGACTGCAGAAGCTGTTGAA
GCTGTGTTACCTACACCACCAATCTGAGTGGCAATGGATGATTCTTTGAT
AGCTGATGTTCCAAGGTCCTTGATTGCAGAGTATTTGATCAGGAAATCGC
TGCACCCATTGTCAAAGAAGATAGTAAAGTGTTTGTTGTTGATGATGACA
GTTTGTAATAAGTAGATACCTTCATCGACAGATGAGTTGTTGGTCTTTGG
AGTTGAAGTATGGAACAACAGACTGATATTCTTGGCGAAGCTTTGGATTC
TTCATGTAAAGCTCCTTGTAATTGGTGAGTAGATCTTTGTTGGCGTTGGA
GTCTTTATGCTCTTCGCAAACTAGTACGTGCTTGCGAATAGTTGACTGCT
GATGGGATGGATGAGGGCAAACAAAGCTTCGTTGACATTTGCCTTCCTTG
TGGTTTCCAGTGTTGGTGTTTGCACCTGGATATAAGCATTGGACGCAGTA
TCCTTTGGTATTGAGGATGGCAAGTCGATTAGCTGGGCTGAGTTCGGCAA
ACCTGTAGCATGAATGATATTGGATGATCTTGGTATATGATGGACCATTA
GTTGCTAGATGACCGCTCTGACCATCGGGTTCTTCGCAAATATGACATTT
TGGTGTGCCAGACGGACCAGTATGACGTCCACCTTTTTGTCGTGGGTCCT
TCTTGGGTGGATTTTTGGTTGAAGGCTTTTAAGGTTTTGAAGCTTCTAGG
ATGTTGATCCGCTGTTGTTGGAGTTTCTGTTCA
Run BLAST on NCBI

transcript from alignment at sc0001476:52829..53661

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036519 ID=TCONS_00036519|Name=TCONS_00036519|organism=Clytia hemisphaerica|type=transcript|length=833bp|location=Sequence derived from alignment at sc0001476:52829..53661 (Clytia hemisphaerica)
TGAACAGAAACTCCAACAACAGCGGATCAACATCCTAGAAGCTTCAAAAC
CTTAAAAGCCTTCAACCAAAAATCCACCCAAGAAGGACCCACGACAAAAA
GGTGGACGTCATACTGGTCCGTCTGGCACACCAAAATGTCATATTTGCGA
AGAACCCGATGGTCAGAGCGGTCATCTAGCAACTAATGGTCCATCATATA
CCAAGATCATCCAATATCATTCATGCTACAGGTTTGCCGAACTCAGCCCA
GCTAATCGACTTGCCATCCTCAATACCAAAGGATACTGCGTCCAATGCTT
ATATCCAGGTGCAAACACCAACACTGGAAACCACAAGGAAGGCAAATGTC
AACGAAGCTTTGTTTGCCCTCATCCATCCCATCAGCAGTCAACTATTCGC
AAGCACGTACTAGTTTGCGAAGAGCATAAAGACTCCAACGCCAACAAAGA
TCTACTCACCAATTACAAGGAGCTTTACATGAAGAATCCAAAGCTTCGCC
AAGAATATCAGTCTGTTGTTCCATACTTCAACTCCAAAGACCAACAACTC
ATCTGTCGATGAAGGTATCTACTTATTACAAACTGTCATCATCAACAACA
AACACTTTACTATCTTCTTTGACAATGGGTGCAGCGATTTCCTGATCAAA
TACTCTGCAATCAAGGACCTTGGAACATCAGCTATCAAAGAATCATCCAT
TGCCACTCAGATTGGTGGTGTAGGTAACACAGCTTCAACAGCTTCTGCAG
TCAGCAATTCAAGCTCTACCAGAATAGACTCCAAGTCAATCCAGATGTTT
CCAAATTATCATTTCCATCCCAGAACCTCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021536XLOC_021536Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036519-exon-sc0001476-1491911889:52829..53661TCONS_00036519-exon-sc0001476-1491911889:52829..53661Clytia hemisphaericaexon
TCONS_00036519-exon-sc0001476-1510915933:52829..53661TCONS_00036519-exon-sc0001476-1510915933:52829..53661Clytia hemisphaericaexon
TCONS_00036519-exon-sc0001476-1575043694:52829..53661TCONS_00036519-exon-sc0001476-1575043694:52829..53661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001476supercontigsc0001476:52829..53661 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.113711	0.110886	0.0643745	0	0.230018	0.181763	0.438579	0.136864	0.0479109	0	0	0.151461	0.839668	1.06872	0.0645687	0.0692921	0.128043	0.0437468	0.483508	0.758934	0.109942	0.241316	0	0.118533	0.183129	0.544795	0.23388	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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