TCONS_00036517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036517
Unique NameTCONS_00036517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036517 ID=TCONS_00036517|Name=TCONS_00036517|organism=Clytia hemisphaerica|type=transcript|length=389bp
TTCAAATCTTAATGAGCAGCTGTCTGCTTTTAAACTCATCCTTGGTGTTG
AGGTCTGGTTTTATTTCCCTAATAAATAGTGCCTCAATTGTCAATAAGTG
TACTTCTCCTTTGATTGTAGAGACTAAAATTTCAAGGTCCTCAAATTCAG
GTTTTCGTTTACAACATCTCATGAAACGCATCCTTACTGGCCCTTCCTTT
CTATTTCTGTGTTCTTTAAAGCGGGTGATCACGTGTCGAGCAGTTTGCCC
AACATAGCAAGAATTACATCTTGGACaagaaattttataaatcaCTCCAC
TTTTCAGTTCTCTTTTGATAGAAGGTTTAAGGCTAGGAAGGGTTGTTTTG
AGCTTTCTAAGTGTGACCACTGGTTGTACTGGTGCTCCA
Run BLAST on NCBI

protein sequence of TCONS_00036517-protein

>TCONS_00036517-protein ID=TCONS_00036517-protein|Name=TCONS_00036517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
GAPVQPVVTLRKLKTTLPSLKPSIKRELKSGVIYKISCPRCNSCYVGQTA
RHVITRFKEHRNRKEGPVRMRFMRCCKRKPEFEDLEILVSTIKGEVHLLT
IEALFIREIKPDLNTKDEFKSRQLLIKI
Run BLAST on NCBI

transcript from alignment at sc0001476:26764..27152

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036517 ID=TCONS_00036517|Name=TCONS_00036517|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at sc0001476:26764..27152 (Clytia hemisphaerica)
TGGAGCACCAGTACAACCAGTGGTCACACTTAGAAAGCTCAAAACAACCC
TTCCTAGCCTTAAACCTTCTATCAAAAGAGAACTGAAAAGTGGAGtgatt
tataaaatttcttGTCCAAGATGTAATTCTTGCTATGTTGGGCAAACTGC
TCGACACGTGATCACCCGCTTTAAAGAACACAGAAATAGAAAGGAAGGGC
CAGTAAGGATGCGTTTCATGAGATGTTGTAAACGAAAACCTGAATTTGAG
GACCTTGAAATTTTAGTCTCTACAATCAAAGGAGAAGTACACTTATTGAC
AATTGAGGCACTATTTATTAGGGAAATAAAACCAGACCTCAACACCAAGG
ATGAGTTTAAAAGCAGACAGCTGCTCATTAAGATTTGAA

Coding sequence (CDS) from alignment at sc0001476:26764..27152

>TCONS_00036517 ID=TCONS_00036517|Name=TCONS_00036517|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0001476:26764..27152 (Clytia hemisphaerica)
GGAGCACCAGTACAACCAGTGGTCACACTTAGAAAGCTCAAAACAACCCT
TCCTAGCCTTAAACCTTCTATCAAAAGAGAACTGAAAAGTGGAGtgattt
ataaaatttcttGTCCAAGATGTAATTCTTGCTATGTTGGGCAAACTGCT
CGACACGTGATCACCCGCTTTAAAGAACACAGAAATAGAAAGGAAGGGCC
AGTAAGGATGCGTTTCATGAGATGTTGTAAACGAAAACCTGAATTTGAGG
ACCTTGAAATTTTAGTCTCTACAATCAAAGGAGAAGTACACTTATTGACA
ATTGAGGCACTATTTATTAGGGAAATAAAACCAGACCTCAACACCAAGGA
TGAGTTTAAAAGCAGACAGCTGCTCATTAAGATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021534XLOC_021534Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036517-proteinTCONS_00036517-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036517-exon-sc0001476-1491911889:26764..27152TCONS_00036517-exon-sc0001476-1491911889:26764..27152Clytia hemisphaericaexon
TCONS_00036517-exon-sc0001476-1510915933:26764..27152TCONS_00036517-exon-sc0001476-1510915933:26764..27152Clytia hemisphaericaexon
TCONS_00036517-exon-sc0001476-1575043694:26764..27152TCONS_00036517-exon-sc0001476-1575043694:26764..27152Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001476supercontigsc0001476:26764..27152 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.627189	0	0	1.1982	1.32955	1.82027	1.15687	1.3118	1.05831	0.587771	1.09758	0.523632	1.92207	0.174236	0.525705	0	0.275724	0.370463	1.20159	0	1.15547	0.813899	0.959638	0.596864	2.00413	1.92185	0.990736	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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