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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036516 ID=TCONS_00036516|Name=TCONS_00036516|organism=Clytia hemisphaerica|type=transcript|length=932bp
cttttgaaatgattttctcGATGGTTGAAGAAATGATTGGGTCATAAAAT
TCTGGTGGATACTGGTTCTTCTCTAACATCGACTTAGCCCTTTGAAGGCT
TTCATGAAAGTGGCGCCAGTGACTGCAAGCTCTGTATATTCTGTGGACAA
TACCAGATACTACATTCCGTTTGTATCGTTTCGGTGACAACGCGTGGAAG
TTCATCATAAGCCCGGTATCTGTCGGTTTGCAGTACCATGTTGACTCAAG
GGAGTTTCCTTTGTGTATGATACATACGTTTAGGAAAGGTAGCTTACCAT
CCTCTTCAATCTCCAACGTGAATTTCAAATTCTTGTGGACTTTCTCATCG
TCGTTAACGTCAATCAACTTTTGATCAATGTGTTGTCGTTTAATTGATCT
TAGAATATCGTCCATGTAACGCTCGAAAATTTTCGCGTCATCTTTGATAA
ATTCTTCGAATTTGGACAACCATATATTGGCCAGACAAGGGTCTGGTTGG
GAACCCATGGCTAAGCCATCCACTTGTTTGTACGGCCCATCATGAGTTAG
CAACATAACGTCAGTTGTCGCAAGTTTGGTTAGTGATAAANATATATTGG
CCAGACAAGGGGCTGGTTGGGAACCCATGGCTAAGCCATCCACTTGTTTG
TACGGTCCATCATGAGTTAGCAACATAACGTCAGTTGTCGCAAGTTTGGT
TAGTGTGATAAATGTTTCTTTGTCAACAGGTGGCTTTTTTACATTCCCAG
AATAGAGTAGGTCAGCTGCATCTTGGATCGCTTCGTCGACGGGTACGTTG
GTGTACAGCGATTTCACATCAAACGAGATCATGACTTTGTCCTCATCTAA
CTCGATATCCTTTAGCTGATCAACCGTTTTCTTTGCTGAACTATTAATTT
TCGATTGTGGTACGACTGACAACCATTCTGTT Run BLAST on NCBI protein sequence of TCONS_00036516-protein >TCONS_00036516-protein ID=TCONS_00036516-protein|Name=TCONS_00036516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
TEWLSVVPQSKINSSAKKTVDQLKDIELDEDKVMISFDVKSLYTNVPVDE
AIQDAADLLYSGNVKKPPVDKETFITLTKLATTDVMLLTHDGPYKQVDGL
AMGSQPAPCLANIXLSLTKLATTDVMLLTHDGPYKQVDGLAMGSQPDPCL
ANIWLSKFEEFIKDDAKIFERYMDDILRSIKRQHIDQKLIDVNDDEKVHK
NLKFTLEIEEDGKLPFLNVCIIHKGNSLESTWYCKPTDTGLMMNFHALSP
KRYKRNVVSGIVHRIYRACSHWRHFHESLQRAKSMLEKNQYPPEFYDPII
SSTIEKIISK Run BLAST on NCBI transcript from alignment at sc0001476:25714..26645 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036516 ID=TCONS_00036516|Name=TCONS_00036516|organism=Clytia hemisphaerica|type=transcript|length=932bp|location=Sequence derived from alignment at sc0001476:25714..26645 (Clytia hemisphaerica)
AACAGAATGGTTGTCAGTCGTACCACAATCGAAAATTAATAGTTCAGCAA
AGAAAACGGTTGATCAGCTAAAGGATATCGAGTTAGATGAGGACAAAGTC
ATGATCTCGTTTGATGTGAAATCGCTGTACACCAACGTACCCGTCGACGA
AGCGATCCAAGATGCAGCTGACCTACTCTATTCTGGGAATGTAAAAAAGC
CACCTGTTGACAAAGAAACATTTATCACACTAACCAAACTTGCGACAACT
GACGTTATGTTGCTAACTCATGATGGACCGTACAAACAAGTGGATGGCTT
AGCCATGGGTTCCCAACCAGCCCCTTGTCTGGCCAATATATNTTTATCAC
TAACCAAACTTGCGACAACTGACGTTATGTTGCTAACTCATGATGGGCCG
TACAAACAAGTGGATGGCTTAGCCATGGGTTCCCAACCAGACCCTTGTCT
GGCCAATATATGGTTGTCCAAATTCGAAGAATTTATCAAAGATGACGCGA
AAATTTTCGAGCGTTACATGGACGATATTCTAAGATCAATTAAACGACAA
CACATTGATCAAAAGTTGATTGACGTTAACGACGATGAGAAAGTCCACAA
GAATTTGAAATTCACGTTGGAGATTGAAGAGGATGGTAAGCTACCTTTCC
TAAACGTATGTATCATACACAAAGGAAACTCCCTTGAGTCAACATGGTAC
TGCAAACCGACAGATACCGGGCTTATGATGAACTTCCACGCGTTGTCACC
GAAACGATACAAACGGAATGTAGTATCTGGTATTGTCCACAGAATATACA
GAGCTTGCAGTCACTGGCGCCACTTTCATGAAAGCCTTCAAAGGGCTAAG
TCGATGTTAGAGAAGAACCAGTATCCACCAGAATTTTATGACCCAATCAT
TTCTTCAACCATCgagaaaatcatttcaaaag Coding sequence (CDS) from alignment at sc0001476:25714..26645 >TCONS_00036516 ID=TCONS_00036516|Name=TCONS_00036516|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at sc0001476:25714..26645 (Clytia hemisphaerica)
ACAGAATGGTTGTCAGTCGTACCACAATCGAAAATTAATAGTTCAGCAAA
GAAAACGGTTGATCAGCTAAAGGATATCGAGTTAGATGAGGACAAAGTCA
TGATCTCGTTTGATGTGAAATCGCTGTACACCAACGTACCCGTCGACGAA
GCGATCCAAGATGCAGCTGACCTACTCTATTCTGGGAATGTAAAAAAGCC
ACCTGTTGACAAAGAAACATTTATCACACTAACCAAACTTGCGACAACTG
ACGTTATGTTGCTAACTCATGATGGACCGTACAAACAAGTGGATGGCTTA
GCCATGGGTTCCCAACCAGCCCCTTGTCTGGCCAATATATNTTTATCACT
AACCAAACTTGCGACAACTGACGTTATGTTGCTAACTCATGATGGGCCGT
ACAAACAAGTGGATGGCTTAGCCATGGGTTCCCAACCAGACCCTTGTCTG
GCCAATATATGGTTGTCCAAATTCGAAGAATTTATCAAAGATGACGCGAA
AATTTTCGAGCGTTACATGGACGATATTCTAAGATCAATTAAACGACAAC
ACATTGATCAAAAGTTGATTGACGTTAACGACGATGAGAAAGTCCACAAG
AATTTGAAATTCACGTTGGAGATTGAAGAGGATGGTAAGCTACCTTTCCT
AAACGTATGTATCATACACAAAGGAAACTCCCTTGAGTCAACATGGTACT
GCAAACCGACAGATACCGGGCTTATGATGAACTTCCACGCGTTGTCACCG
AAACGATACAAACGGAATGTAGTATCTGGTATTGTCCACAGAATATACAG
AGCTTGCAGTCACTGGCGCCACTTTCATGAAAGCCTTCAAAGGGCTAAGT
CGATGTTAGAGAAGAACCAGTATCCACCAGAATTTTATGACCCAATCATT
TCTTCAACCATCgagaaaatcatttcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036516-exon-sc0001476-1491911889:25714..26645 | TCONS_00036516-exon-sc0001476-1491911889:25714..26645 | Clytia hemisphaerica | exon |
| TCONS_00036516-exon-sc0001476-1510915933:25714..26645 | TCONS_00036516-exon-sc0001476-1510915933:25714..26645 | Clytia hemisphaerica | exon |
| TCONS_00036516-exon-sc0001476-1575043694:25714..26645 | TCONS_00036516-exon-sc0001476-1575043694:25714..26645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001476 | supercontig | sc0001476:25714..26645 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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