TCONS_00036511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036511
Unique NameTCONS_00036511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length954

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036511 ID=TCONS_00036511|Name=TCONS_00036511|organism=Clytia hemisphaerica|type=transcript|length=954bp
ACTACATCCCAGTCTTTACCGGGCTTATGGAGCTATCAGTAGTATATTTT
GACGAAGCCATCCTCTTTAAGTCGTGTATCAAAACAAACGCTTTAGTGGA
TGTGCTCAACAgattaaaaaacatcaaaactcaGTTTAGTGGGTTCCGGA
CCCAAACTGGTCACTTGTTGAAACTGATTAAAAAGCATTTAGACCCTAAC
AGagGAGGGGAAGCCGAAAAAGGAGAAGAAACAGAAGACGAAAACGAAGA
CGAAGACGAAAGAGACGACGAAGAAGAAGGAGAACAGGacgaagaaggag
aagaagacGAAGAAGACGACGAAGACTACGAAGAAGACGACGTAGATGAC
acagatgaagaagaagaaagatttaaaatcaagaaaagaaaacaagatAA
AAATCGAAAGAAAGAAATAGGAAGCAAGAAAGCAAAGAAAGCAAAGAAAC
AAGACCTCCAATGCATACATTATTACCCAGCAGAAGACAGGTTGTCAGAA
AAAGTTGACTTGCCGGCATCGCAAATAATCTCcttaaaagaaaaagtcaa
ggaTAGACTGCTGACTGAATTTGGGGAGTATGATTCTGTAAAGaAATTTA
CATCAAACAGCGGGCACCAGAAGCTTCGCACGACTTGTCCGTTCAAAGAT
TGTCCCTCGGGATTCGATGGGGTAGAGATCGCGACACACCTCAAAGGCAG
GCACCACATGTGGACAAAGGAATATGCAGATAAAGAGCAAAACTATAGAC
ACCGaatgtttgattggtgtaCTCGTTTGAAAGCTTACAAAAGCTCCTAC
CCTAAGATGTGTCGTGAATGCCGCAAATTTTACGATCGTTTGGACACCCA
TCTCAGATACAGTCACAATATGAAGAATAAAGCCGAGAGAGATATTGAAA
TCGAGGCTTGCAAGCGCGAGGAGACCCGATTTCTTAGTTTCCACAACTCG
TTTA
Run BLAST on NCBI

transcript from alignment at sc0001476:4262..8335-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036511 ID=TCONS_00036511|Name=TCONS_00036511|organism=Clytia hemisphaerica|type=transcript|length=4074bp|location=Sequence derived from alignment at sc0001476:4262..8335- (Clytia hemisphaerica)
ACTACATCCCAGTCTTTACCGGGCTTATGGAGCTATCAGTAGTATATTTT
GACGAAGCCATCCTCTTTAAGTCGTGTATCAAAACAAACGCTTTAGTGGA
TGTGCTCAACAGATTAAAAAACATCAAAACTCAGTTTAGTGGGTTCCGGA
CCCAAACTGGTCACTTGTTGAAACTGATTAAAAAGCATTTAGACCCTAAC
AGAGGTAATTTTGAAATTTTACAATGAAATCAATTGCGATCACCAACTCG
AATGTTTTATGAGGTTTTTCTTGTATTTTTTAAGGGAACGAGTAGTGACC
CCTGCCTCTACCCCTCCCTTTATAAATCTACCCCTCCTTTCTTGCCTACC
CCCTCTTTTCAAAAAATTATTTACTATGTCTTGCTATCTGACTTGGCATA
TGAAACTTTATCCTTATATTTGTTTTTGATGAAGGAGGGGAAGCCGAAAA
AGGAGAAGAAACAGAAGACGAAAACGAAGACGAAGACGAAAGAGACGACG
AAGAAGAAGGAGAACAGGACGAAGAAGGAGAAGAAGACGAAGAAGACGAC
GAAGACTACGAAGAAGACGACGTAGATGACACAGATGAAGAAGAAGAAAG
ATTTAAAATCAAGAAAAGAAAACAAGATAAAAATCGAAAGAAAGAAATAG
GAAGCAAGAAAGCAAAGAAAGCAAAGAAACAAGACCTCCAATGCATACAT
TATTACCCAGCAGAAGACAGGTATGGTAGAATTTCCCTTCTGACCTCTCA
AAATTAAATTAAAGCCGAAGCAAAAGCTAAAACTGAGGTACAACAACTAA
TTATTCTTCCTTTGTTTTGGATATTGTTTTCATTCTGTTGATAAAGGCCT
TTTGTGGAAACAATTTTAGGTGTCTAAAGGCTGTAGATTCCTTTTCGAGC
ATGCCACAAAAAATGCATGGTATTCATTTATTTTATAGGTTGTCAGAAAA
AGTTGACTTGCCGGCATCGCAAATAATCTCCTTAAAAGAAAAAGTCAAGG
ATAGACTGCTGACTGAATTTGGGGAGTATGATTCTGTAAAGGTAAGAGTT
AGGGTCATATTTTCATCCTTCCGTCTATCTTTCAAGTCACTCTTGTGCAA
TCAAATTTACAATTTTATTCTGTTACTTGGATCCCTTTCCGCTTTAGTTT
TAAGTTTATTTATTTCTTATTCCTCATCTTTTCCAGTGACAATAAACCAG
CTGCGCTGGAAGCTCCGGCTTAAGAGATTAAAAGATGTGAAAGATGAGTT
TGTTGAGTTAGTTGTGTTAGAACGTTGCCTACAAACTACTAATCAGAACA
GATCAGAAAGCAAAGTAATAATTCTATTGCAGAGCGACTATGAGAAATAA
TCTTAACAAATATAAATAAACAAGCTGAAAGTTTAGCTCTTCTAAGTGAT
TACACACGCACTTTCTTGCCTAAAGAACCAACCTTACCCCCTCCCCCACT
CATCCTCAACTAAAAAGTTCAAGATTGGAGCTAAAGGAGATAAACGTTTA
GAAGTCAATATTTCCAAGTTCTTATAAATTTATTTTTTTCTAAACTTGCC
AATAGTGAGGCCATGGTGCGCCGTTGATTTGATTGTCCGGATAAAATTTT
GGGTAGAAAAATAGCCTAAACTAGAGGCCACGGCTTTTAGTAGCTAAGCA
TTATTATTTCTGTTGGGGAAAATACTTGGAGGAGAGTAGGATAAACCAAA
TAAAATGGTACAATAGTGTGTATGTAATAAATAGTGGTATATTTGGAAAA
AACCTGTTTCGGGTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGTGTCTCAGT
GACCCAGTGAGAATATTTTAGCCAATAGGGATAAAATGAAGGAGATAATA
GCCGATGCGGATAAATATTTTTTAATGGGTCCGGGTTTCAAATTCTATTA
TTTACAGCTAAAAATTCTGGTTGGGATTCCCAAAATTTTAATGTTCATCC
CATTGGGAAGGGAAGTTCAATGTGATTTTCCTATTGTGATAAAATTTCAG
GGCTTGGGCGTTTTTCTCACCCGATTTATCCAGTGGGGAGGGTGTCCTAT
CGGGTCTGTCACATAAGGGAGTTCTATTTTAAAACTTTTTCGTGCATGAA
TAGTCTTTATATTGTAATAGATTATTTGGAAAATACCAAGCTCAAATATC
CTTTTAGGACTACATCCCAGTCTTTACCGGGCTTATGGAGCTATCAGTAG
TATATTTTGACGAAGCCATCCTCTTTAAGTCGTGTATCAAAACAAACGCT
TTAGTGGATGTGCTCAACAGATTAAAAAACATCAAAACTCAGTTTAGTGG
GTTCCGGACCCAAACTGGTCACTTGTTGAAACTGATTAAAAAGCATTTAG
ACCCTAACAGAGGTAATTTTGAAATTTTACAATGAAATCAATTGCGATCA
CCAACTCGAATGTTTTATGAGGTTTTTCTTGTATTTTTTAAGGGAACGAG
TAGTGACCCCTGCCTCTACCCCTCCCTTTATAAATCTACCCCTCCTTTCT
TGCCTACCCCCTCTTTTCAAAAAATTATTTACTATGTCTTGCTATCTGAC
TTGGCATATGAAACTTTATCCTTATATTTGTTTTTGATGAAGGAGGGGAA
GCCGAAAAAGGAGAAGAAACAGAAGACGAAAACGAAGACGAAGACGAAAG
AGACGACGAAGAAGAAGGAGAACAGGACGAAGAAGGAGAAGAAGACGAAG
AAGACGACGAAGACTACGAAGAAGACGACGTAGATGACACAGATGAAGAA
GAAGAAAGATTTAAAATCAAGAAAAGAAAACAAGATAAAAATCGAAAGAA
AGAAATAGGAAGAAAGAAAGCAAAGAAAGCAAAGAAACAAGACCTCCAAT
GCATACATTATTACCCAGCAGAAGACAGGTATGGTAGAATTTCCCTTCTG
ACCTCTCAAAATTAAATTAAAGCCGAAGCAAAAGCTAAAACTGAGGTACA
ACAACTAATTATTCTTCCTTTGTTTTGGATATTGTTTTCATTCTGTTGAT
AAAGGCCTTTTGTGGAAACAATTTTAGGTGTCTAAAGGCTGTAGATTCCT
TTTCGAGCATGGCACAAAAAATGCATGGTATTCATTTATTTTATAGGTTG
TCAGAAAAAGTTGACTTGCCGGCATCGCAAATAATCTCCTTAAAAGAAAA
AGTCAAGGATAGACTGCTGACTGAATTTGGGGAGTATGATTCTGTAAAGG
TAAGAGTTAGGGTCATATTTTCATCCTTCCGTCTATCTTTCAAGTCACTC
TTGTGCAATCAAATTTACAATTTTATTCTGTTACTTGGATCTCTTTCCGC
TTTAGTTTTAAGTTTATTTATTTCTTATTCCTCATCTTTTCCAGTGACAA
TGACTAATTTGTTCAAAAAGATTAGTCCTTATTCCCTGGCCAGTCACTTT
AAATTTTAGATTTTATTATTTTTTTTATTACAGAAATTTACATCAAACAG
CGGGCACCAGAAGCTTCGCACGACTTGTCCGTTCAAAGATTGTCCCTCGG
GATTCGATGGGGTAGAGATCGCGACACACCTCAAAGGCAGGCACCACATG
TGGACAAAGGAATATGCAGATAAAGAGCAAAACTATAGACACCGGTACTT
TATTTTAATTTAATCGAAAGCAGATACTCGTGGTATCGAAATAACTGCAT
TGTCTCCTACTAATATACTAATAACATTGACGCCTCAGAAGTTAACTCAG
CCCTAATATATCTTTCACTTATACAAAGAAAGAATGAAATGTTGATCTCC
TTCGTATGATATATATTTTATATCATTGTGTAGGATCATTTTGTTTTTTC
AAGTTATATTTCATTTTTACACAGAATGTTTGATTGGTGTACTCGTTTGA
AAGCTTACAAAAGCTCCTACCCTAAGATGTGTCGTGAATGCCGCAAATTT
TACGATCGTTTGGACACCCATCTCAGATACAGTCACAATATGAAGAATAA
AGCCGAGAGAGATATTGAAATCGAGGCTTGCAAGCGCGAGGAGACCCGAT
TTCTTAGTTTCCACAACTCGTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021530XLOC_021530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036511-exon-sc0001476-1575043694:8132..8335TCONS_00036511-exon-sc0001476-1575043694:8132..8335Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1575043694:7616..7901TCONS_00036511-exon-sc0001476-1575043694:7616..7901Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1575043694:5087..5189TCONS_00036511-exon-sc0001476-1575043694:5087..5189Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1575043694:4692..4852TCONS_00036511-exon-sc0001476-1575043694:4692..4852Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1575043694:4262..4461TCONS_00036511-exon-sc0001476-1575043694:4262..4461Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1510915933:8132..8335TCONS_00036511-exon-sc0001476-1510915933:8132..8335Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1510915933:7616..7901TCONS_00036511-exon-sc0001476-1510915933:7616..7901Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1510915933:5087..5189TCONS_00036511-exon-sc0001476-1510915933:5087..5189Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1510915933:4692..4852TCONS_00036511-exon-sc0001476-1510915933:4692..4852Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1510915933:4262..4461TCONS_00036511-exon-sc0001476-1510915933:4262..4461Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1491911889:8132..8335TCONS_00036511-exon-sc0001476-1491911889:8132..8335Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1491911889:7616..7901TCONS_00036511-exon-sc0001476-1491911889:7616..7901Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1491911889:5087..5189TCONS_00036511-exon-sc0001476-1491911889:5087..5189Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1491911889:4692..4852TCONS_00036511-exon-sc0001476-1491911889:4692..4852Clytia hemisphaericaexon
TCONS_00036511-exon-sc0001476-1491911889:4262..4461TCONS_00036511-exon-sc0001476-1491911889:4262..4461Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001476supercontigsc0001476:4262..8335 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28825	2.06916	1.10515	0.359055	2.46086	2.23288	2.4552	3.3201	3.97762	2.52488	5.0304	5.66922	4.30507	3.81306	2.86743	3.54805	3.28956	4.0133	3.7443	3.78186	2.96478	2.88194	1.60571	2.85693	3.00717	2.56184	1.28018	1.49045	1.07499	0.753429
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top