TCONS_00036510 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036510
Unique NameTCONS_00036510
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036510 ID=TCONS_00036510|Name=TCONS_00036510|organism=Clytia hemisphaerica|type=transcript|length=536bp
AGGaagaaagaaagcaaagaaAGCAAAGAAACAAGACCTCCAATGCATAC
ATTATTACCCAGCAGAAGACAGGTTGTCAGAAAAAGTTGACTTGCCGGCA
TCGCAAATAATCTCcttaaaagaaaaagtcaaggaTAGACTGCTGACTGA
ATTTGGGGAGTATGATTCTGTAAAGaAATTTACATCAAACAGCGGGCACC
AGAAGCTTCGCACGACTTGTCCGTTCAAAGATTGTCCCTCGGGATTCGAT
GGGGTAGAGATCGCGACACACCTCAAAGGCAGGCACCACATGTGGACAAA
GGAATATGCAGATAAAGAGCAAAACTATAGACACCGaatgtttgattggt
gtaCTCGTTTGAAAGCTTACAAAAGCTCCTACCCTAAGATGTGTCGTGAA
TGCCGCAAATTTTACGATCGTTTGGACACCCATCTCAGATACAGTCACAA
TATGAAGAATAAAGCCGAGAGAGATATTGAAATCGAGGCTTGCAAGCGCG
AGGAGACCCGATTTCTTAGTTTCCACAACTCGTTTA
Run BLAST on NCBI

transcript from alignment at sc0001476:4262..5479-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036510 ID=TCONS_00036510|Name=TCONS_00036510|organism=Clytia hemisphaerica|type=transcript|length=1218bp|location=Sequence derived from alignment at sc0001476:4262..5479- (Clytia hemisphaerica)
AGGAAGAAAGAAAGCAAAGAAAGCAAAGAAACAAGACCTCCAATGCATAC
ATTATTACCCAGCAGAAGACAGGTATGGTAGAATTTCCCTTCTGACCTCT
CAAAATTAAATTAAAGCCGAAGCAAAAGCTAAAACTGAGGTACAACAACT
AATTATTCTTCCTTTGTTTTGGATATTGTTTTCATTCTGTTGATAAAGGC
CTTTTGTGGAAACAATTTTAGGTGTCTAAAGGCTGTAGATTCCTTTTCGA
GCATGGCACAAAAAATGCATGGTATTCATTTATTTTATAGGTTGTCAGAA
AAAGTTGACTTGCCGGCATCGCAAATAATCTCCTTAAAAGAAAAAGTCAA
GGATAGACTGCTGACTGAATTTGGGGAGTATGATTCTGTAAAGGTAAGAG
TTAGGGTCATATTTTCATCCTTCCGTCTATCTTTCAAGTCACTCTTGTGC
AATCAAATTTACAATTTTATTCTGTTACTTGGATCTCTTTCCGCTTTAGT
TTTAAGTTTATTTATTTCTTATTCCTCATCTTTTCCAGTGACAATGACTA
ATTTGTTCAAAAAGATTAGTCCTTATTCCCTGGCCAGTCACTTTAAATTT
TAGATTTTATTATTTTTTTTATTACAGAAATTTACATCAAACAGCGGGCA
CCAGAAGCTTCGCACGACTTGTCCGTTCAAAGATTGTCCCTCGGGATTCG
ATGGGGTAGAGATCGCGACACACCTCAAAGGCAGGCACCACATGTGGACA
AAGGAATATGCAGATAAAGAGCAAAACTATAGACACCGGTACTTTATTTT
AATTTAATCGAAAGCAGATACTCGTGGTATCGAAATAACTGCATTGTCTC
CTACTAATATACTAATAACATTGACGCCTCAGAAGTTAACTCAGCCCTAA
TATATCTTTCACTTATACAAAGAAAGAATGAAATGTTGATCTCCTTCGTA
TGATATATATTTTATATCATTGTGTAGGATCATTTTGTTTTTTCAAGTTA
TATTTCATTTTTACACAGAATGTTTGATTGGTGTACTCGTTTGAAAGCTT
ACAAAAGCTCCTACCCTAAGATGTGTCGTGAATGCCGCAAATTTTACGAT
CGTTTGGACACCCATCTCAGATACAGTCACAATATGAAGAATAAAGCCGA
GAGAGATATTGAAATCGAGGCTTGCAAGCGCGAGGAGACCCGATTTCTTA
GTTTCCACAACTCGTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021530XLOC_021530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036510-exon-sc0001476-1575043694:5408..5479TCONS_00036510-exon-sc0001476-1575043694:5408..5479Clytia hemisphaericaexon
TCONS_00036510-exon-sc0001476-1575043694:5087..5189TCONS_00036510-exon-sc0001476-1575043694:5087..5189Clytia hemisphaericaexon
TCONS_00036510-exon-sc0001476-1575043694:4692..4852TCONS_00036510-exon-sc0001476-1575043694:4692..4852Clytia hemisphaericaexon
TCONS_00036510-exon-sc0001476-1575043694:4262..4461TCONS_00036510-exon-sc0001476-1575043694:4262..4461Clytia hemisphaericaexon
TCONS_00036510-exon-sc0001476-1510915933:5408..5479TCONS_00036510-exon-sc0001476-1510915933:5408..5479Clytia hemisphaericaexon
TCONS_00036510-exon-sc0001476-1510915933:5087..5189TCONS_00036510-exon-sc0001476-1510915933:5087..5189Clytia hemisphaericaexon
TCONS_00036510-exon-sc0001476-1510915933:4692..4852TCONS_00036510-exon-sc0001476-1510915933:4692..4852Clytia hemisphaericaexon
TCONS_00036510-exon-sc0001476-1510915933:4262..4461TCONS_00036510-exon-sc0001476-1510915933:4262..4461Clytia hemisphaericaexon
TCONS_00036510-exon-sc0001476-1491911889:5408..5479TCONS_00036510-exon-sc0001476-1491911889:5408..5479Clytia hemisphaericaexon
TCONS_00036510-exon-sc0001476-1491911889:5087..5189TCONS_00036510-exon-sc0001476-1491911889:5087..5189Clytia hemisphaericaexon
TCONS_00036510-exon-sc0001476-1491911889:4692..4852TCONS_00036510-exon-sc0001476-1491911889:4692..4852Clytia hemisphaericaexon
TCONS_00036510-exon-sc0001476-1491911889:4262..4461TCONS_00036510-exon-sc0001476-1491911889:4262..4461Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001476supercontigsc0001476:4262..5479 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.00301	0.728446	0.983627	0.52723	0.93072	0	0.948044	0.542026	5.73794	3.67021	7.3065	5.96079	5.78266	7.80368	3.81462	5.91496	1.95173	3.83532	1.85332	4.00857	4.32355	2.832	1.88888	2.36319	1.67372	1.52982	4.58048	1.94093	3.65159	1.96528
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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