TCONS_00036506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036506
Unique NameTCONS_00036506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036506 ID=TCONS_00036506|Name=TCONS_00036506|organism=Clytia hemisphaerica|type=transcript|length=497bp
GTTGTCATTTTCTGTTGTTCGATGGCGTAGCAAATTTCAAAGAGGATTAA
AGAGAAAGATTCAAGGTTTACAGATTTTTGGGAAAGAGATAGGATTTCGG
AGGAGAGTTCAGATGAAAGGTTTTCTTTGGTGACATAATTGTCTTTTATA
TCTTCTATGTGATCAaatatgattttattttgattttcaactttttctag
aCGTGTGGATATGGAGTTTATTACATTATTTACTTTCGTGACATTTTTTT
CGAGAGCTGAAAATTTTGCAAAGATAGTTTCTGTGTTGACTGTAATTTTT
TCCAGAAGAGTGGCTAATTCTGTTACTTGGGATTTGACTAGACCCATACC
TTCTGTACAACTATTGACACTTGTTTTCAAAGATTCAGATTCTTTGCCAA
AGTTTGCAACCTGTGCATAAGATTTTTCTAGTTGGGAATACGAACTTTTA
ACTTCTTTGACAGAGTTGTTAATGGCAGAAATTTTGGAGGATCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00036506-protein

>TCONS_00036506-protein ID=TCONS_00036506-protein|Name=TCONS_00036506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
QRSSKISAINNSVKEVKSSYSQLEKSYAQVANFGKESESLKTSVNSCTEG
MGLVKSQVTELATLLEKITVNTETIFAKFSALEKNVTKVNNVINSISTRL
EKVENQNKIIFDHIEDIKDNYVTKENLSSELSSEILSLSQKSVNLESFSL
ILFEICYAIEQQKMT
Run BLAST on NCBI

transcript from alignment at sc0001475:53152..53648

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036506 ID=TCONS_00036506|Name=TCONS_00036506|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at sc0001475:53152..53648 (Clytia hemisphaerica)
CAAAGATCCTCCAAAATTTCTGCCATTAACAACTCTGTCAAAGAAGTTAA
AAGTTCGTATTCCCAACTAGAAAAATCTTATGCACAGGTTGCAAACTTTG
GCAAAGAATCTGAATCTTTGAAAACAAGTGTCAATAGTTGTACAGAAGGT
ATGGGTCTAGTCAAATCCCAAGTAACAGAATTAGCCACTCTTCTGGAAAA
AATTACAGTCAACACAGAAACTATCTTTGCAAAATTTTCAGCTCTCGAAA
AAAATGTCACGAAAGTAAATAATGTAATAAACTCCATATCCACACGtcta
gaaaaagttgaaaatcaaaataaaatcatattTGATCACATAGAAGATAT
AAAAGACAATTATGTCACCAAAGAAAACCTTTCATCTGAACTCTCCTCCG
AAATCCTATCTCTTTCCCAAAAATCTGTAAACCTTGAATCTTTCTCTTTA
ATCCTCTTTGAAATTTGCTACGCCATCGAACAACAGAAAATGACAAC

Coding sequence (CDS) from alignment at sc0001475:53152..53648

>TCONS_00036506 ID=TCONS_00036506|Name=TCONS_00036506|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0001475:53152..53648 (Clytia hemisphaerica)
CAAAGATCCTCCAAAATTTCTGCCATTAACAACTCTGTCAAAGAAGTTAA
AAGTTCGTATTCCCAACTAGAAAAATCTTATGCACAGGTTGCAAACTTTG
GCAAAGAATCTGAATCTTTGAAAACAAGTGTCAATAGTTGTACAGAAGGT
ATGGGTCTAGTCAAATCCCAAGTAACAGAATTAGCCACTCTTCTGGAAAA
AATTACAGTCAACACAGAAACTATCTTTGCAAAATTTTCAGCTCTCGAAA
AAAATGTCACGAAAGTAAATAATGTAATAAACTCCATATCCACACGtcta
gaaaaagttgaaaatcaaaataaaatcatattTGATCACATAGAAGATAT
AAAAGACAATTATGTCACCAAAGAAAACCTTTCATCTGAACTCTCCTCCG
AAATCCTATCTCTTTCCCAAAAATCTGTAAACCTTGAATCTTTCTCTTTA
ATCCTCTTTGAAATTTGCTACGCCATCGAACAACAGAAAATGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021526XLOC_021526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036506-exon-sc0001475-1491911889:53152..53648TCONS_00036506-exon-sc0001475-1491911889:53152..53648Clytia hemisphaericaexon
TCONS_00036506-exon-sc0001475-1510915933:53152..53648TCONS_00036506-exon-sc0001475-1510915933:53152..53648Clytia hemisphaericaexon
TCONS_00036506-exon-sc0001475-1575043694:53152..53648TCONS_00036506-exon-sc0001475-1575043694:53152..53648Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036506-proteinTCONS_00036506-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001475supercontigsc0001475:53152..53648 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.515273	0.268067	0	0.486648	0	0.18755	0.104342	0	0	0	0	0.153619	0	0.0850826	0	0	0	0.134679	0.13095	0.176323	0.234006	0	0.0492549	0.128411	0	0	0.168913	0.259569	0	0.139304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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