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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036505 ID=TCONS_00036505|Name=TCONS_00036505|organism=Clytia hemisphaerica|type=transcript|length=1203bp
GTCAGGTCTTTCCTCGGTTAAAAGAGTTTTCAGATCTTGTTTTTTAGATT
TATATCCATTGAGGTttaattgaattatttttagaGTCATCATTATGGCG
GAGAAGAAATAGTCGGGGATTCTTGTAGTAATAGAGAGGTTGTTTCTAGT
TCTTCTATTGACTGCATGAAAGTTTCTTTACTGAAGTTGCTGTTATGTCT
TTTTAGGATGGATTGAGGTTGGAAACAGATTTCTAGGTGAGTTGTCATTT
TCTGTTGTTCGATGGCGTAGCAAATTTCAAAGAGGATTAAAGAGAAGGAT
TCAAGGTTTACAGATTTTTGGGAAAGAGATAGGATTTCAGAGGAGAGTTC
AGATGAAAGGTTTTCTTTGGTGACATAATTGTCTTTTATATCTTCTAGGT
GTTCAAAtatgattttattttggttttcaactttttctagaCGTGTGGAT
ATGGAGTTTATTACATTATTTACTTTCGTGACACTTTTCTCGAGAGCTGA
AAATTTTGCAAAGAGAGTTTCTGTGTTGACTGTAATTTTTTCCAGAAGAG
TGGCTAATTCTGTTACTTGGGATTTGACTAGACCCATACCTTCTGTACAA
CTATTGACACTTGTTTTCAAAGATTCAGATTCTTTGCAAAAGTTTGCAAC
CTGAGCATAAGATTTTTCTAGTTGGGAATATGAACTTTTAACTTCTTTGA
CAGAGTTGTTAATGGCAGAAATTTTGGAGGATCTTTGTCTGTCTTGTCGT
GTGATGGTGGCTTTTTCTACTAGGCTCTTGTAGACGGAGCAGCCTCTATA
GAATGATGAATGGTTTTTCTCACAATTGACACACTTTTTCTGATTACATT
TTTTCCTACATTCTTCTTTTCCACACCAGCTACACAAggagttttttttg
tttacaagtgGATTGTACGTGGCCAAACTTCAGACACTTTTTACATTGAA
TGATGTAATTATCAATGGGATCAAATTTTCTAACAAAGTGTTTGGTTATT
TTGTTATTGGCTTTGATGGTGAGTGGAAATTCTTCTTCTATGTCTCCTTT
TAGGACTTCAAAAACAACAAGATTACCTTCTCTTCTAAGATTATATACTT
TTTTCACATGATATTCCAGATGGTCAAAGACTAATTGGAGAGAAATAGGG
GGGCCAGTTTCTGATTCCATGGCTAATTTATTAATACAAAAACTATCGAG
AAG Run BLAST on NCBI protein sequence of TCONS_00036505-protein >TCONS_00036505-protein ID=TCONS_00036505-protein|Name=TCONS_00036505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MGLVKSQVTELATLLEKITVNTETLFAKFSALEKSVTKVNNVINSISTRL
EKVENQNKIIFEHLEDIKDNYVTKENLSSELSSEILSLSQKSVNLESFSL
ILFEICYAIEQQKMTTHLEICFQPQSILKRHNSNFSKETFMQSIEELETT
SLLLQESPTISSPP Run BLAST on NCBI transcript from alignment at sc0001475:48514..49716 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036505 ID=TCONS_00036505|Name=TCONS_00036505|organism=Clytia hemisphaerica|type=transcript|length=1203bp|location=Sequence derived from alignment at sc0001475:48514..49716 (Clytia hemisphaerica)
CTTCTCGATAGTTTTTGTATTAATAAATTAGCCATGGAATCAGAAACTGG
CCCCCCTATTTCTCTCCAATTAGTCTTTGACCATCTGGAATATCATGTGA
AAAAAGTATATAATCTTAGAAGAGAAGGTAATCTTGTTGTTTTTGAAGTC
CTAAAAGGAGACATAGAAGAAGAATTTCCACTCACCATCAAAGCCAATAA
CAAAATAACCAAACACTTTGTTAGAAAATTTGATCCCATTGATAATTACA
TCATTCAATGTAAAAAGTGTCTGAAGTTTGGCCACGTACAATCcacttgt
aaacaaaaaaaactccTTGTGTAGCTGGTGTGGAAAAGAAGAATGTAGGA
AAAAATGTAATCAGAAAAAGTGTGTCAATTGTGAGAAAAACCATTCATCA
TTCTATAGAGGCTGCTCCGTCTACAAGAGCCTAGTAGAAAAAGCCACCAT
CACACGACAAGACAGACAAAGATCCTCCAAAATTTCTGCCATTAACAACT
CTGTCAAAGAAGTTAAAAGTTCATATTCCCAACTAGAAAAATCTTATGCT
CAGGTTGCAAACTTTTGCAAAGAATCTGAATCTTTGAAAACAAGTGTCAA
TAGTTGTACAGAAGGTATGGGTCTAGTCAAATCCCAAGTAACAGAATTAG
CCACTCTTCTGGAAAAAATTACAGTCAACACAGAAACTCTCTTTGCAAAA
TTTTCAGCTCTCGAGAAAAGTGTCACGAAAGTAAATAATGTAATAAACTC
CATATCCACACGtctagaaaaagttgaaaaccaaaataaaatcataTTTG
AACACCTAGAAGATATAAAAGACAATTATGTCACCAAAGAAAACCTTTCA
TCTGAACTCTCCTCTGAAATCCTATCTCTTTCCCAAAAATCTGTAAACCT
TGAATCCTTCTCTTTAATCCTCTTTGAAATTTGCTACGCCATCGAACAAC
AGAAAATGACAACTCACCTAGAAATCTGTTTCCAACCTCAATCCATCCTA
AAAAGACATAACAGCAACTTCAGTAAAGAAACTTTCATGCAGTCAATAGA
AGAACTAGAAACAACCTCTCTATTACTACAAGAATCCCCGACTATTTCTT
CTCCGCCATAATGATGACtctaaaaataattcaattaaACCTCAATGGAT
ATAAATCTAAAAAACAAGATCTGAAAACTCTTTTAACCGAGGAAAGACCT
GAC Coding sequence (CDS) from alignment at sc0001475:48514..49716 >TCONS_00036505 ID=TCONS_00036505|Name=TCONS_00036505|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0001475:48514..49716 (Clytia hemisphaerica)
ATGGGTCTAGTCAAATCCCAAGTAACAGAATTAGCCACTCTTCTGGAAAA
AATTACAGTCAACACAGAAACTCTCTTTGCAAAATTTTCAGCTCTCGAGA
AAAGTGTCACGAAAGTAAATAATGTAATAAACTCCATATCCACACGtcta
gaaaaagttgaaaaccaaaataaaatcataTTTGAACACCTAGAAGATAT
AAAAGACAATTATGTCACCAAAGAAAACCTTTCATCTGAACTCTCCTCTG
AAATCCTATCTCTTTCCCAAAAATCTGTAAACCTTGAATCCTTCTCTTTA
ATCCTCTTTGAAATTTGCTACGCCATCGAACAACAGAAAATGACAACTCA
CCTAGAAATCTGTTTCCAACCTCAATCCATCCTAAAAAGACATAACAGCA
ACTTCAGTAAAGAAACTTTCATGCAGTCAATAGAAGAACTAGAAACAACC
TCTCTATTACTACAAGAATCCCCGACTATTTCTTCTCCGCCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036505-exon-sc0001475-1491911889:48514..49716 | TCONS_00036505-exon-sc0001475-1491911889:48514..49716 | Clytia hemisphaerica | exon |
| TCONS_00036505-exon-sc0001475-1510915933:48514..49716 | TCONS_00036505-exon-sc0001475-1510915933:48514..49716 | Clytia hemisphaerica | exon |
| TCONS_00036505-exon-sc0001475-1575043694:48514..49716 | TCONS_00036505-exon-sc0001475-1575043694:48514..49716 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001475 | supercontig | sc0001475:48514..49716 . |
Blast
The following BLAST results are available for this feature:
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