TCONS_00036503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036503
Unique NameTCONS_00036503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036503 ID=TCONS_00036503|Name=TCONS_00036503|organism=Clytia hemisphaerica|type=transcript|length=573bp
GTGGGCAAGAGTTCTTCTTGCGACAATTGCAGGATTTTTCATCAACTGGG
GTTTCCTCAgacaaaatattcttattatgAGAGGAAATTATAGTGGCAAC
ATTCGGCATACAACTGTAGCTTACTTTGAGATTGTTTCTATTGAAGAGTT
TGTATAGTCTGTGTTCTTTCGGGAAGTTTTTGTTGACGATACTTAAACAT
TTCTTGGCTACGTTTGTTTTTACGTTTAAGCTGTAAGGGGGATTAAACCA
GATTANAGGATTTTTCATCAACGGGGGTTTCCTCAgacaaaatattctta
ttatgAGAGGAAATTATAGTGGCAACATTCGGCATACAACTGTAGCTTAC
TTTGAGATTGTTTCTATTGAAGAGTTTGTATAGTCTGCGTTCTTTCGGGA
AGTTTTTGTTGACGATACTTAAACATTTCTTGGCTACGTTTGTTTTTACG
TTTAAGCTGTAAGGGGGATTAAACCAGATTATTTTTCCGTTTTCGTACAC
GTTTACTTTTTGTAGTTGGATTGCAATATTAAATTTTTGACTTATAACCA
CTGCGGCTTAGGGCGTCATTGTA
Run BLAST on NCBI

transcript from alignment at sc0001475:24447..25019

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036503 ID=TCONS_00036503|Name=TCONS_00036503|organism=Clytia hemisphaerica|type=transcript|length=573bp|location=Sequence derived from alignment at sc0001475:24447..25019 (Clytia hemisphaerica)
TACAATGACGCCCTAAGCCGCAGTGGTTATAAGTCAAAAATTTAATATTG
CAATCCAACTACAAAAAGTAAACGTGTACGAAAACGGAAAAATAATCTGG
TTTAATCCCCCTTACAGCTTAAACGTAAAAACAAACGTAGCCAAGAAATG
TTTAAGTATCGTCAACAAAAACTTCCCGAAAGAACGCAGACTATACAAAC
TCTTCAATAGAAACAATCTCAAAGTAAGCTACAGTTGTATGCCGAATGTT
GCCACTATAATTTCCTCTcataataagaatattttgtcTGAGGAAACCCC
CGTTGATGAAAAATCCTNTAATCTGGTTTAATCCCCCTTACAGCTTAAAC
GTAAAAACAAACGTAGCCAAGAAATGTTTAAGTATCGTCAACAAAAACTT
CCCGAAAGAACACAGACTATACAAACTCTTCAATAGAAACAATCTCAAAG
TAAGCTACAGTTGTATGCCGAATGTTGCCACTATAATTTCCTCTcataat
aagaatattttgtcTGAGGAAACCCCAGTTGATGAAAAATCCTGCAATTG
TCGCAAGAAGAACTCTTGCCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021523XLOC_021523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036503-exon-sc0001475-1491911889:24447..25019TCONS_00036503-exon-sc0001475-1491911889:24447..25019Clytia hemisphaericaexon
TCONS_00036503-exon-sc0001475-1510915933:24447..25019TCONS_00036503-exon-sc0001475-1510915933:24447..25019Clytia hemisphaericaexon
TCONS_00036503-exon-sc0001475-1575043694:24447..25019TCONS_00036503-exon-sc0001475-1575043694:24447..25019Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001475supercontigsc0001475:24447..25019 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0974663	0.285135	0	0.107966	0.788633	0.623188	0.626542	1.05581	0.410665	0.40694	0.888718	0.454384	1.16679	0.673181	0	0.534539	0.658508	0.299978	0.310827	0.650515	0.282708	0.137895	0.111753	0.304799	1.46503	1.58769	0.93552	0.855782	1.40634	1.2124
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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