TCONS_00036501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036501
Unique NameTCONS_00036501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036501 ID=TCONS_00036501|Name=TCONS_00036501|organism=Clytia hemisphaerica|type=transcript|length=801bp
TTCACTAAACTCTGCCtacatataatttttttttacttctgtttGACACA
CAACTTATTTCAGAAAGATACTATGTATTCAAATCAAATTAACAACCACC
ATGTATATCGTCTCATTTAAGCTGAAGCCCATCTTGAAAGGTATGAAGTA
TTGAACGTAGAACCACTTCACACTGTGATGGGTAATCTGAAAAACATCTA
CGACATGCTTTCTGTCAGTCTTCCGAAGGAAAAGAAGGCAATCTTTGAAA
ATGGAAAAGACGCGtcattttcttcaaaagaagcaaaaagagGAGTTGAC
TACAGACGAAGCGTTGTGGACCTCACCATCTACATGCAGGATAAGATTGA
TAGTCAATTCTACAACATCCTGCGTAACTTGGTTGAAATTCAGGAAATAT
TGTACGGTAAAGAAGAAAATAGAAGTTCTAAGAAGATTCTACGCATGTAC
AATCTCGCGTTCCTGAACGATTACCATTCGAAACAAATTCTCGATACATC
AAAAACGAAAAAAATGACGGATCGGCGTTTGTTTGGTCAATACTTCCACA
ACATAACTAGCCATGCAGCTCCCCAACTCAGGATAATGCCATTAGCATCG
GCTCACACAGAGCACGAAGAAAGAGCTTTTAATTTCTTAAGTTGTCAGTA
AAAGAACGTCCAATCACCATCCTGATAACGTTCTTGGGAATGGATGGATC
CGTCTTCAAGTTCACGAAGAGTTTCAAGCAGCAGCGTCTTATGAAAAAGA
GAAAAAAGACAAAACTCAGAAATACGTTGAAAAAAATGCCAATGAGCTGT
C
Run BLAST on NCBI

protein sequence of TCONS_00036501-protein

>TCONS_00036501-protein ID=TCONS_00036501-protein|Name=TCONS_00036501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MGNLKNIYDMLSVSLPKEKKAIFENGKDASFSSKEAKRGVDYRRSVVDLT
IYMQDKIDSQFYNILRNLVEIQEILYGKEENRSSKKILRMYNLAFLNDYH
SKQILDTSKTKKMTDRRLFGQYFHNITSHAAPQLRIMPLASAHTEHEERA
FNFLSCQ
Run BLAST on NCBI

transcript from alignment at sc0001474:30300..31100

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036501 ID=TCONS_00036501|Name=TCONS_00036501|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at sc0001474:30300..31100 (Clytia hemisphaerica)
GACAGCTCATTGGCATTTTTTTCAACGTATTTCTGAGTTTTGTCTTTTTT
CTCTTTTTCATAAGACGCTGCTGCTTGAAACTCTTCGTGAACTTGAAGAC
GGATCCATCCATTCCCAAGAACGTTATCAGGATGGTGATTGGACGTTCTT
TTACTGACAACTTAAGAAATTAAAAGCTCTTTCTTCGTGCTCTGTGTGAG
CCGATGCTAATGGCATTATCCTGAGTTGGGGAGCTGCATGGCTAGTTATG
TTGTGGAAGTATTGACCAAACAAACGCCGATCCGTCATTTTTTTCGTTTT
TGATGTATCGAGAATTTGTTTCGAATGGTAATCGTTCAGGAACGCGAGAT
TGTACATGCGTAGAATCTTCTTAGAACTTCTATTTTCTTCTTTACCGTAC
AATATTTCCTGAATTTCAACCAAGTTACGCAGGATGTTGTAGAATTGACT
ATCAATCTTATCCTGCATGTAGATGGTGAGGTCCACAACGCTTCGTCTGT
AGTCAACTCctctttttgcttcttttgaagaaaatgaCGCGTCTTTTCCA
TTTTCAAAGATTGCCTTCTTTTCCTTCGGAAGACTGACAGAAAGCATGTC
GTAGATGTTTTTCAGATTACCCATCACAGTGTGAAGTGGTTCTACGTTCA
ATACTTCATACCTTTCAAGATGGGCTTCAGCTTAAATGAGACGATATACA
TGGTGGTTGTTAATTTGATTTGAATACATAGTATCTTTCTGAAATAAGTT
GTGTGTCaaacagaagtaaaaaaaaattatatgtaGGCAGAGTTTAGTGA
A

Coding sequence (CDS) from alignment at sc0001474:30300..31100

>TCONS_00036501 ID=TCONS_00036501|Name=TCONS_00036501|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0001474:30300..31100 (Clytia hemisphaerica)
TTACTGACAACTTAAGAAATTAAAAGCTCTTTCTTCGTGCTCTGTGTGAG
CCGATGCTAATGGCATTATCCTGAGTTGGGGAGCTGCATGGCTAGTTATG
TTGTGGAAGTATTGACCAAACAAACGCCGATCCGTCATTTTTTTCGTTTT
TGATGTATCGAGAATTTGTTTCGAATGGTAATCGTTCAGGAACGCGAGAT
TGTACATGCGTAGAATCTTCTTAGAACTTCTATTTTCTTCTTTACCGTAC
AATATTTCCTGAATTTCAACCAAGTTACGCAGGATGTTGTAGAATTGACT
ATCAATCTTATCCTGCATGTAGATGGTGAGGTCCACAACGCTTCGTCTGT
AGTCAACTCctctttttgcttcttttgaagaaaatgaCGCGTCTTTTCCA
TTTTCAAAGATTGCCTTCTTTTCCTTCGGAAGACTGACAGAAAGCATGTC
GTAGATGTTTTTCAGATTACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021521XLOC_021521Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036501-proteinTCONS_00036501-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036501-exon-sc0001474-1491911889:30300..31100TCONS_00036501-exon-sc0001474-1491911889:30300..31100Clytia hemisphaericaexon
TCONS_00036501-exon-sc0001474-1510915933:30300..31100TCONS_00036501-exon-sc0001474-1510915933:30300..31100Clytia hemisphaericaexon
TCONS_00036501-exon-sc0001474-1575043694:30300..31100TCONS_00036501-exon-sc0001474-1575043694:30300..31100Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001474supercontigsc0001474:30300..31100 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.360656	0.606008	0.500426	0.303579	0.399121	1.31527	0.786439	0	0	0	0	0	0	0	0	0	0	0.386056	0.746516	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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