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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036500 ID=TCONS_00036500|Name=TCONS_00036500|organism=Clytia hemisphaerica|type=transcript|length=1856bp
CTTTCTTTTGATACCGTTCGCTAGATGGGGTCACTGTTCGTCTTCCTTTC
AGCACAAATTTAAGAATTAAATCCGTTATTTTTCTGGGAATCAAAGAATT
TTTCATATGGTGTAAGGTAACAGGAGAAAGCTAAAAGCTTCTTCTGTCTC
ACTGTGAAGTTATTTATCGTGCATTTCCAGCTGCTCATTCGTAAATTCAA
GATTTGTACTGGTGGGTAAGAGACTTTTTTCCACTGAAATATTTTCCGCG
AAAAAACTTTTCTCCTCAAATATGACGTAAGTAATTAAGTTTTTCTATCG
TTTCATTGGTTAAAAGTTATCTAAAATGGCGGCCTCAAACGTAAACAATA
CTTTTTGTAGAGAGCATATTAATAAAATTTTGTGTGATAAAGAGCTTCCT
GAATATTGGGGCAAAGACAGTAAGGTAACTTTTAGGATGCTTTCTGAAAT
CTTTTCTTATCTTGATGAAAACCGTTTATCTAATAGTGGTAGTTTGGTtt
caattttggatgttctttgtGGTAAGGAGACATTGCCGATAATAAAAAAG
CCTTCTAACTTTATTCGCAAAATGAAGCTCTTTATGAGAAAAAACAGTAA
CTGTCTTGATAACTATGTGAAGGATCTCTATGAGAGTGATGGCAAAACTT
CTTTCTACATTGGTCCCTTATGTAGTAGATTTGGGTTGACTTCTGAAAAG
ATAAATCCGAATGATTCAAACTGCTTGAAAAATTCTTTCGAGGGAATTGT
TGTCAATCGAAATGAAAATGCAATTAGTAATGGGTTGCTGCTAGAGCTGA
AATCTTTCTGTCTAAGTCATGGATTTTCTTGGGCCAAATTTCATCAATGT
GTTTCTCAGCTCTTTCCTGAAGCTGAAGTTCAATTCAATTATAATTCTCT
TGACAAGTTTAGAAATGCGATTAAGTTACTTATCAGTAAAAGAGAGTCAT
TGAgactgaaaaaattggaaaactttttgaatGAACCCTTTATTTTTCCC
TATTCTAATTCAAAACAACAGGTTgatggaaaagaaaaaattaatgagac
AGTCGAATACCGAGAGCTCGATATAACCATTTACACTTTGTTGGATAAAA
TTGAAGAATTAGAGTTGAAAGTTTTTAATATCTGCGAAGCTCTTCGAGAA
GAGAGTAGAGACAAACTCCAATGTTTGACTGAAATAAAAATTGAGAAAGT
GAGAAAACCTCCTTAGATTTAAGCAAAGCATTGTCCAAACTCTCTCATTT
GTCTGCCAAAAATGTTAACAAATGTATTAAtcgtcaaaagaaagaaaaag
aaaagttgagCGAAGAGCTTTCTCAAAATAAAGACCATATAAGTGCCCTT
GAATCTTCCCTTGAAATGCAATCTTTAGAGCATGAAAAagcattttctca
aaataaagACCATATAAGTGCCCTTGAATCTTCCCTTGAAATGCAATCTT
TAGAGCATGAAAAAGCACTTTCAAAACTCAacgagaaacttcaaaaaaca
ttgcaaaaatcaaccaaatatAGAAGGCAAAATTATAATTGGAAAAACAA
GGCAAAATCATTACAAAAAAAACTAGATGAAACCAGTGATGATGGGTTTC
AATCCCATTCTAAAAATCTTACAGCTGAAATAAAGgacttaaaagaagaa
attaaataCCTCGAGTACGAAAAACTTAAGGTTGAAGAAGAGCTTGAAAG
TTTTATGAACAATGACGAAATCAGGGTCTTTGAAAATGGTCGATACAATA
GTGACATAAGAGCAGTTTATGAGGATTTACTATGTATGGGTGTGTACTAG
GAATGTGAAAGAGGTTGTAAGAACAGTCTTGAAAAATATTGCCAAGAGAA
ATGCCC Run BLAST on NCBI protein sequence of TCONS_00036500-protein >TCONS_00036500-protein ID=TCONS_00036500-protein|Name=TCONS_00036500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MAASNVNNTFCREHINKILCDKELPEYWGKDSKVTFRMLSEIFSYLDENR
LSNSGSLVSILDVLCGKETLPIIKKPSNFIRKMKLFMRKNSNCLDNYVKD
LYESDGKTSFYIGPLCSRFGLTSEKINPNDSNCLKNSFEGIVVNRNENAI
SNGLLLELKSFCLSHGFSWAKFHQCVSQLFPEAEVQFNYNSLDKFRNAIK
LLISKRESLRLKKLENFLNEPFIFPYSNSKQQVDGKEKINETVEYRELDI
TIYTLLDKIEELELKVFNICEALREESRDKLQCLTEIKIEKVRKPP Run BLAST on NCBI transcript from alignment at sc0001474:19751..21606 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036500 ID=TCONS_00036500|Name=TCONS_00036500|organism=Clytia hemisphaerica|type=transcript|length=1856bp|location=Sequence derived from alignment at sc0001474:19751..21606 (Clytia hemisphaerica)
GGGCATTTCTCTTGGCAATATTTTTCAAGACTGTTCTTACAACCTCTTTC
ACATTCCTAGTACACACCCATACATAGTAAATCCTCATAAACTGCTCTTA
TGTCACTATTGTATCGACCATTTTCAAAGACCCTGATTTCGTCATTGTTC
ATAAAACTTTCAAGCTCTTCTTCAACCTTAAGTTTTTCGTACTCGAGGta
tttaatttcttcttttaagtcCTTTATTTCAGCTGTAAGATTTTTAGAAT
GGGATTGAAACCCATCATCACTGGTTTCATCTAGTTTTTTTTGTAATGAT
TTTGCCTTGTTTTTCCAATTATAATTTTGCCTTCTatatttggttgattt
ttgcaatgttttttgaagtttctcgtTGAGTTTTGAAAGTGCTTTTTCAT
GCTCTAAAGATTGCATTTCAAGGGAAGATTCAAGGGCACTTATATGGTct
ttattttgagaaaatgctTTTTCATGCTCTAAAGATTGCATTTCAAGGGA
AGATTCAAGGGCACTTATATGGTCTTTATTTTGAGAAAGCTCTTCGctca
acttttctttttctttcttttgacgaTTAATACATTTGTTAACATTTTTG
GCAGACAAATGAGAGAGTTTGGACAATGCTTTGCTTAAATCTAAGGAGGT
TTTCTCACTTTCTCAATTTTTATTTCAGTCAAACATTGGAGTTTGTCTCT
ACTCTCTTCTCGAAGAGCTTCGCAGATATTAAAAACTTTCAACTCTAATT
CTTCAATTTTATCCAACAAAGTGTAAATGGTTATATCGAGCTCTCGGTAT
TCGACTgtctcattaattttttcttttccatcAACCTGTTGTTTTGAATT
AGAATAGGGAAAAATAAAGGGTTCattcaaaaagttttccaattttttca
gtcTCAATGACTCTCTTTTACTGATAAGTAACTTAATCGCATTTCTAAAC
TTGTCAAGAGAATTATAATTGAATTGAACTTCAGCTTCAGGAAAGAGCTG
AGAAACACATTGATGAAATTTGGCCCAAGAAAATCCATGACTTAGACAGA
AAGATTTCAGCTCTAGCAGCAACCCATTACTAATTGCATTTTCATTTCGA
TTGACAACAATTCCCTCGAAAGAATTTTTCAAGCAGTTTGAATCATTCGG
ATTTATCTTTTCAGAAGTCAACCCAAATCTACTACATAAGGGACCAATGT
AGAAAGAAGTTTTGCCATCACTCTCATAGAGATCCTTCACATAGTTATCA
AGACAGTTACTGTTTTTTCTCATAAAGAGCTTCATTTTGCGAATAAAGTT
AGAAGGCTTTTTTATTATCGGCAATGTCTCCTTACCacaaagaacatcca
aaattgaaACCAAACTACCACTATTAGATAAACGGTTTTCATCAAGATAA
GAAAAGATTTCAGAAAGCATCCTAAAAGTTACCTTACTGTCTTTGCCCCA
ATATTCAGGAAGCTCTTTATCACACAAAATTTTATTAATATGCTCTCTAC
AAAAAGTATTGTTTACGTTTGAGGCCGCCATTTTAGATAACTTTTAACCA
ATGAAACGATAGAAAAACTTAATTACTTACGTCATATTTGAGGAGAAAAG
TTTTTTCGCGGAAAATATTTCAGTGGAAAAAAGTCTCTTACCCACCAGTA
CAAATCTTGAATTTACGAATGAGCAGCTGGAAATGCACGATAAATAACTT
CACAGTGAGACAGAAGAAGCTTTTAGCTTTCTCCTGTTACCTTACACCAT
ATGAAAAATTCTTTGATTCCCAGAAAAATAACGGATTTAATTCTTAAATT
TGTGCTGAAAGGAAGACGAACAGTGACCCCATCTAGCGAACGGTATCAAA
AGAAAG Coding sequence (CDS) from alignment at sc0001474:19751..21606 >TCONS_00036500 ID=TCONS_00036500|Name=TCONS_00036500|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at sc0001474:19751..21606 (Clytia hemisphaerica)
CTAAGGAGGTTTTCTCACTTTCTCAATTTTTATTTCAGTCAAACATTGGA
GTTTGTCTCTACTCTCTTCTCGAAGAGCTTCGCAGATATTAAAAACTTTC
AACTCTAATTCTTCAATTTTATCCAACAAAGTGTAAATGGTTATATCGAG
CTCTCGGTATTCGACTgtctcattaattttttcttttccatcAACCTGTT
GTTTTGAATTAGAATAGGGAAAAATAAAGGGTTCattcaaaaagttttcc
aattttttcagtcTCAATGACTCTCTTTTACTGATAAGTAACTTAATCGC
ATTTCTAAACTTGTCAAGAGAATTATAATTGAATTGAACTTCAGCTTCAG
GAAAGAGCTGAGAAACACATTGATGAAATTTGGCCCAAGAAAATCCATGA
CTTAGACAGAAAGATTTCAGCTCTAGCAGCAACCCATTACTAATTGCATT
TTCATTTCGATTGACAACAATTCCCTCGAAAGAATTTTTCAAGCAGTTTG
AATCATTCGGATTTATCTTTTCAGAAGTCAACCCAAATCTACTACATAAG
GGACCAATGTAGAAAGAAGTTTTGCCATCACTCTCATAGAGATCCTTCAC
ATAGTTATCAAGACAGTTACTGTTTTTTCTCATAAAGAGCTTCATTTTGC
GAATAAAGTTAGAAGGCTTTTTTATTATCGGCAATGTCTCCTTACCacaa
agaacatccaaaattgaaACCAAACTACCACTATTAGATAAACGGTTTTC
ATCAAGATAAGAAAAGATTTCAGAAAGCATCCTAAAAGTTACCTTACTGT
CTTTGCCCCAATATTCAGGAAGCTCTTTATCACACAAAATTTTATTAATA
TGCTCTCTACAAAAAGTATTGTTTACGTTTGAGGCCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036500-exon-sc0001474-1491911889:19751..21606 | TCONS_00036500-exon-sc0001474-1491911889:19751..21606 | Clytia hemisphaerica | exon |
| TCONS_00036500-exon-sc0001474-1510915933:19751..21606 | TCONS_00036500-exon-sc0001474-1510915933:19751..21606 | Clytia hemisphaerica | exon |
| TCONS_00036500-exon-sc0001474-1575043694:19751..21606 | TCONS_00036500-exon-sc0001474-1575043694:19751..21606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001474 | supercontig | sc0001474:19751..21606 . |
Blast
The following BLAST results are available for this feature:
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