TCONS_00036497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036497
Unique NameTCONS_00036497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036497 ID=TCONS_00036497|Name=TCONS_00036497|organism=Clytia hemisphaerica|type=transcript|length=618bp
CAAACTCCACGTAACTTAAGTGACAGTTCTAAACATGCTAAAGAAAGCAT
GCATACTACTACCTCTTCTTCTTCAACGTCGAAATCTGAATGTAGAACTG
TCTCAACAAAACCAATTGTACTGAAATCTaagATTAAAGAAATATCACAC
AACAGTGGATGTTCAACTGAAGCGAAAACAGGCAAAAACTCTACAATCTC
ATCAATTGCGACAGCAGCCGAGCTGGAGCTTAGAATGCCGACTACGTGGC
TTGAATACCTAAATAAAGCAGATATTGAATGGGTTAATGAAACTTTATTT
ACACCCGCTGGACAACTTGTAGAGCCTATAAAATATGGCATGAACCACCA
AAACCAAACCCCCatggtaaaaatgaaaaaccgaTACCTAGTGATTACTT
TCGCCGTCGATTTTGTTTATGGGTTCCAAAACATAAACACAAATATCAAT
TTAGGTGTCCCAATTGTCCAAATGAGGAATTAAGACCAAGTGGCATCTAC
AAAAGACTTCGAATTGTCCTTGACATCAAAGATTGGTATTATCTTGGGAC
TGAGAAAGTTAGTTGTAGAAAATGTGGTAAAAATTTTATTGGATGGGACA
ATCGCTTGTTAGACCAGC
Run BLAST on NCBI

protein sequence of TCONS_00036497-protein

>TCONS_00036497-protein ID=TCONS_00036497-protein|Name=TCONS_00036497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
QTPRNLSDSSKHAKESMHTTTSSSSTSKSECRTVSTKPIVLKSKIKEISH
NSGCSTEAKTGKNSTISSIATAAELELRMPTTWLEYLNKADIEWVNETLF
TPAGQLVEPIKYGMNHQNQTPMVKMKNRYLVITFAVDFVYGFQNINTNIN
LGVPIVQMRN
Run BLAST on NCBI

transcript from alignment at sc0001474:4218..5227+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036497 ID=TCONS_00036497|Name=TCONS_00036497|organism=Clytia hemisphaerica|type=transcript|length=1010bp|location=Sequence derived from alignment at sc0001474:4218..5227+ (Clytia hemisphaerica)
CAAACTCCACGTAACTTAAGTGACAGTTCTAAACATGCTAAAGAAAGCAT
GGTAAGGACTTCAAAATTTTTATTTTCGCATAGTTACAATTTTTTAAgca
aaatcaaaaGCATTTCTTCCGACTGCTTACATTTTCAGTTTTCCATAact
taaagttttttctccaattttatTTTCCAGCATACTACTACCTCTTCTTC
TTCAACGTCGAAATCTGAATGTAGAACTGTCTCAACAAAACCAATTGTAC
TGAAATCTaaggtttgtttgtttgtttgttttatatAATATTAGTTCTAG
CTCAGTTTTTCTGTACAAATAATAAGTATATATTTGATGATGTATATATT
GCTAATGATATTGTACAACAGTTCATTTTTTTATCAGATTAAAGAAATAT
CACACAACAGTGGATGTTCAACTGAAGCGAAAACAGGCAAAAACTCTACA
ATCTCATCAATTGCGACAGCAGCCGAGGTATAAATCTCTTAACTTTCTTC
AAATTTGGttcataatatttaaaaaattttaaagtttggtATTCCTTTTT
GCTCCATATAAGTATATATAGTTCAGAGATACACCAAGCATATATATACA
CATCCTAATTTTAGCTGGAGCTTAGAATGCCGACTACGTGGCTTGAATAC
CTAAATAAAGCAGATATTGAATGGGTTAATGAAACTTTATTTACACCCGC
TGGACAACTTGTAGAGCCTATAAAATATGGCATGAACCACCAAAACCAAA
CCCCCatggtaaaaatgaaaaaccgaTACCTAGTGATTACTTTCGCCGTC
GATTTTGTTTATGGGTTCCAAAACATAAACACAAATATCAATTTAGGTGT
CCCAATTGTCCAAATGAGGAATTAAGACCAAGTGGCATCTACAAAAGACT
TCGAATTGTCCTTGACATCAAAGATTGGTATTATCTTGGGACTGAGAAAG
TTAGTTGTAGAAAATGTGGTAAAAATTTTATTGGATGGGACAATCGCTTG
TTAGACCAGC

Coding sequence (CDS) from alignment at sc0001474:4218..5227+

>TCONS_00036497 ID=TCONS_00036497|Name=TCONS_00036497|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at sc0001474:4218..5227+ (Clytia hemisphaerica)
CAAACTCCACGTAACTTAAGTGACAGTTCTAAACATGCTAAAGAAAGCAT
GCATACTACTACCTCTTCTTCTTCAACGTCGAAATCTGAATGTAGAACTG
TCTCAACAAAACCAATTGTACTGAAATCTaagATTAAAGAAATATCACAC
AACAGTGGATGTTCAACTGAAGCGAAAACAGGCAAAAACTCTACAATCTC
ATCAATTGCGACAGCAGCCGAGCTGGAGCTTAGAATGCCGACTACGTGGC
TTGAATACCTAAATAAAGCAGATATTGAATGGGTTAATGAAACTTTATTT
ACACCCGCTGGACAACTTGTAGAGCCTATAAAATATGGCATGAACCACCA
AAACCAAACCCCCatggtaaaaatgaaaaaccgaTACCTAGTGATTACTT
TCGCCGTCGATTTTGTTTATGGGTTCCAAAACATAAACACAAATATCAAT
TTAGGTGTCCCAATTGTCCAAATGAGGAATTAACAAACTCCACGTAACTT
AAGTGACAGTTCTAAACATGCTAAAGAAAGCATGCATACTACTACCTCTT
CTTCTTCAACGTCGAAATCTGAATGTAGAACTGTCTCAACAAAACCAATT
GTACTGAAATCTaagATTAAAGAAATATCACACAACAGTGGATGTTCAAC
TGAAGCGAAAACAGGCAAAAACTCTACAATCTCATCAATTGCGACAGCAG
CCGAGCTGGAGCTTAGAATGCCGACTACGTGGCTTGAATACCTAAATAAA
GCAGATATTGAATGGGTTAATGAAACTTTATTTACACCCGCTGGACAACT
TGTAGAGCCTATAAAATATGGCATGAACCACCAAAACCAAACCCCCatgg
taaaaatgaaaaaccgaTACCTAGTGATTACTTTCGCCGTCGATTTTGTT
TATGGGTTCCAAAACATAAACACAAATATCAATTTAGGTGTCCCAATTGT
CCAAATGAGGAATTAACAAACTCCACGTAACTTAAGTGACAGTTCTAAAC
ATGCTAAAGAAAGCATGCATACTACTACCTCTTCTTCTTCAACGTCGAAA
TCTGAATGTAGAACTGTCTCAACAAAACCAATTGTACTGAAATCTaagAT
TAAAGAAATATCACACAACAGTGGATGTTCAACTGAAGCGAAAACAGGCA
AAAACTCTACAATCTCATCAATTGCGACAGCAGCCGAGCTGGAGCTTAGA
ATGCCGACTACGTGGCTTGAATACCTAAATAAAGCAGATATTGAATGGGT
TAATGAAACTTTATTTACACCCGCTGGACAACTTGTAGAGCCTATAAAAT
ATGGCATGAACCACCAAAACCAAACCCCCatggtaaaaatgaaaaaccga
TACCTAGTGATTACTTTCGCCGTCGATTTTGTTTATGGGTTCCAAAACAT
AAACACAAATATCAATTTAGGTGTCCCAATTGTCCAAATGAGGAATTAAC
AAACTCCACGTAACTTAAGTGACAGTTCTAAACATGCTAAAGAAAGCATG
CATACTACTACCTCTTCTTCTTCAACGTCGAAATCTGAATGTAGAACTGT
CTCAACAAAACCAATTGTACTGAAATCTaagATTAAAGAAATATCACACA
ACAGTGGATGTTCAACTGAAGCGAAAACAGGCAAAAACTCTACAATCTCA
TCAATTGCGACAGCAGCCGAGCTGGAGCTTAGAATGCCGACTACGTGGCT
TGAATACCTAAATAAAGCAGATATTGAATGGGTTAATGAAACTTTATTTA
CACCCGCTGGACAACTTGTAGAGCCTATAAAATATGGCATGAACCACCAA
AACCAAACCCCCatggtaaaaatgaaaaaccgaTACCTAGTGATTACTTT
CGCCGTCGATTTTGTTTATGGGTTCCAAAACATAAACACAAATATCAATT
TAGGTGTCCCAATTGTCCAAATGAGGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021517XLOC_021517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036497-exon-sc0001474-1491911889:4218..4268TCONS_00036497-exon-sc0001474-1491911889:4218..4268Clytia hemisphaericaexon
TCONS_00036497-exon-sc0001474-1510915933:4218..4268TCONS_00036497-exon-sc0001474-1510915933:4218..4268Clytia hemisphaericaexon
TCONS_00036497-exon-sc0001474-1575043694:4218..4268TCONS_00036497-exon-sc0001474-1575043694:4218..4268Clytia hemisphaericaexon
TCONS_00036497-exon-sc0001474-1491911889:4398..4478TCONS_00036497-exon-sc0001474-1491911889:4398..4478Clytia hemisphaericaexon
TCONS_00036497-exon-sc0001474-1510915933:4398..4478TCONS_00036497-exon-sc0001474-1510915933:4398..4478Clytia hemisphaericaexon
TCONS_00036497-exon-sc0001474-1575043694:4398..4478TCONS_00036497-exon-sc0001474-1575043694:4398..4478Clytia hemisphaericaexon
TCONS_00036497-exon-sc0001474-1491911889:4605..4694TCONS_00036497-exon-sc0001474-1491911889:4605..4694Clytia hemisphaericaexon
TCONS_00036497-exon-sc0001474-1510915933:4605..4694TCONS_00036497-exon-sc0001474-1510915933:4605..4694Clytia hemisphaericaexon
TCONS_00036497-exon-sc0001474-1575043694:4605..4694TCONS_00036497-exon-sc0001474-1575043694:4605..4694Clytia hemisphaericaexon
TCONS_00036497-exon-sc0001474-1491911889:4832..5227TCONS_00036497-exon-sc0001474-1491911889:4832..5227Clytia hemisphaericaexon
TCONS_00036497-exon-sc0001474-1510915933:4832..5227TCONS_00036497-exon-sc0001474-1510915933:4832..5227Clytia hemisphaericaexon
TCONS_00036497-exon-sc0001474-1575043694:4832..5227TCONS_00036497-exon-sc0001474-1575043694:4832..5227Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036497-proteinTCONS_00036497-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001474supercontigsc0001474:4218..5227 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.433713	0.169175	0	0	0.467909	0.184874	0	0.730835	0.219289	0	0.790937	0.519931	0.576898	0	0.689575	0.634302	0.325587	1.13463	0.829884	0.578943	0.587074	0.490893	0.0994574	0.180842	0.372527	0	0.237883	0.126937	0.192555	0.196183
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top