TCONS_00036496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036496
Unique NameTCONS_00036496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036496 ID=TCONS_00036496|Name=TCONS_00036496|organism=Clytia hemisphaerica|type=transcript|length=275bp
AAAGTATCAACAATATCACCAAGCAGTGTTAACTCAAAACTTTTGTTGTC
AAGGACACTTTCACACGCTGgaatgcaaacaaagatatcGCCATCAACGC
ACAAGACAAGTATTCCACGCTCCATTCCAAGGAATATTCAATCCCTGTCA
CCAAAAAACACTCCAAACGAGAAAAACTTGCAGCTTTCTACACCTTCACC
GTACAAACGCTCTTCAGCACCATCGGCTATTCCTGTTTTACGCAAACCTC
AAACTCCACGTAACTTAAGTGACAG
Run BLAST on NCBI

transcript from alignment at sc0001474:3440..4110+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036496 ID=TCONS_00036496|Name=TCONS_00036496|organism=Clytia hemisphaerica|type=transcript|length=671bp|location=Sequence derived from alignment at sc0001474:3440..4110+ (Clytia hemisphaerica)
AAAGTATCAACAATATCACCAAGCAGTGTTAACTCAAAACTTTTGTTGTC
AAGGACACTTTCACACGCTGgaatgcaaacaaagatatcGGTGAGacttt
gatgatattttttcccattggcaattttcaaattgaatttattGCTGATT
TCTTCTTTGTTATATATAGGATGGTACTGCGTATTTTTGTTATGAGTTCA
TAGTAAGATGTTCTCAATTCTAGTCATAAGGAGTGTCAAACTGGAGTTCT
GGTTCACAGATAATTTGAAGGTTTCATCACTCAGAATATGGGTTATTACA
GTAAGTAGTTATTTTACAGTAACGCTCTATTCTTATTTTAAACGTCCTCA
GCCATCAACGCACAAGACAAGTATTCCACGCTCCATTCCAAGGAATATTC
AATCCCTGTCACCAAAAAACACTCCAAACGAGAAAAACTTGCAGGtatat
aaatttcattttagtaGTATCTACAGTAGATTAAAAGAATTTCAGAATTA
CGTTTAAGATTATTCTTTCTAGAGTGCTATTTTCGTTTAATGTTTGTTCC
TTAAACTTTCACCCCTGTTACTTTTTTAGCTTTCTACACCTTCACCGTAC
AAACGCTCTTCAGCACCATCGGCTATTCCTGTTTTACGCAAACCTCAAAC
TCCACGTAACTTAAGTGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021516XLOC_021516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036496-exon-sc0001474-1491911889:3440..3529TCONS_00036496-exon-sc0001474-1491911889:3440..3529Clytia hemisphaericaexon
TCONS_00036496-exon-sc0001474-1510915933:3440..3529TCONS_00036496-exon-sc0001474-1510915933:3440..3529Clytia hemisphaericaexon
TCONS_00036496-exon-sc0001474-1575043694:3440..3529TCONS_00036496-exon-sc0001474-1575043694:3440..3529Clytia hemisphaericaexon
TCONS_00036496-exon-sc0001474-1491911889:3791..3883TCONS_00036496-exon-sc0001474-1491911889:3791..3883Clytia hemisphaericaexon
TCONS_00036496-exon-sc0001474-1510915933:3791..3883TCONS_00036496-exon-sc0001474-1510915933:3791..3883Clytia hemisphaericaexon
TCONS_00036496-exon-sc0001474-1575043694:3791..3883TCONS_00036496-exon-sc0001474-1575043694:3791..3883Clytia hemisphaericaexon
TCONS_00036496-exon-sc0001474-1491911889:4019..4110TCONS_00036496-exon-sc0001474-1491911889:4019..4110Clytia hemisphaericaexon
TCONS_00036496-exon-sc0001474-1510915933:4019..4110TCONS_00036496-exon-sc0001474-1510915933:4019..4110Clytia hemisphaericaexon
TCONS_00036496-exon-sc0001474-1575043694:4019..4110TCONS_00036496-exon-sc0001474-1575043694:4019..4110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001474supercontigsc0001474:3440..4110 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.53124	4.42404	0	1.76651	0	1.68534	2.83445	1.01931	2.8859	0	1.89416	4.28763	4.34642	7.62031	2.40399	3.57277	2.12635	5.44171	2.30574	0	0.945245	1.72568	0	7.26234	19.5574	16.6579	2.62239	0	0.58089	5.76242
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top