TCONS_00036495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036495
Unique NameTCONS_00036495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036495 ID=TCONS_00036495|Name=TCONS_00036495|organism=Clytia hemisphaerica|type=transcript|length=379bp
AACAAACCAAGCCATGTACCAAAAGTATCAACAATATCACCAAGCAGTGT
TAACTCAAAACTTTTGTTGTCAAGGACACTTTCACACGCTGgaatgcaaa
caaagatatcGGTGAGactttgatgatattttttcccattggcaattttc
aaattgaatttattGCTGATTTCTTCTTTGTTATATATAGGATGCCATCA
ACGCACAAGACAAGTATTCCACGCTCCATTCCAAGGAATATTCAATCCCT
GTCACCAAAAAACACTCCAAACGAGAAAAACTTGCAGCTTTCTACACCTT
CACCGTACAAACGCTCTTCAGCACCATCGGCTATTCCTGTTTTACGCAAA
CCTCAAACTCCACGTAACTTAAGTGACAG
Run BLAST on NCBI

transcript from alignment at sc0001474:3419..4110+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036495 ID=TCONS_00036495|Name=TCONS_00036495|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at sc0001474:3419..4110+ (Clytia hemisphaerica)
AACAAACCAAGCCATGTACCAAAAGTATCAACAATATCACCAAGCAGTGT
TAACTCAAAACTTTTGTTGTCAAGGACACTTTCACACGCTGgaatgcaaa
caaagatatcGGTGAGactttgatgatattttttcccattggcaattttc
aaattgaatttattGCTGATTTCTTCTTTGTTATATATAGGATGGTACTG
CGTATTTTTGTTATGAGTTCATAGTAAGATGTTCTCAATTCTAGTCATAA
GGAGTGTCAAACTGGAGTTCTGGTTCACAGATAATTTGAAGGTTTCATCA
CTCAGAATATGGGTTATTACAGTAAGTAGTTATTTTACAGTAACGCTCTA
TTCTTATTTTAAACGTCCTCAGCCATCAACGCACAAGACAAGTATTCCAC
GCTCCATTCCAAGGAATATTCAATCCCTGTCACCAAAAAACACTCCAAAC
GAGAAAAACTTGCAGGtatataaatttcattttagtaGTATCTACAGTAG
ATTAAAAGAATTTCAGAATTACGTTTAAGATTATTCTTTCTAGAGTGCTA
TTTTCGTTTAATGTTTGTTCCTTAAACTTTCACCCCTGTTACTTTTTTAG
CTTTCTACACCTTCACCGTACAAACGCTCTTCAGCACCATCGGCTATTCC
TGTTTTACGCAAACCTCAAACTCCACGTAACTTAAGTGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021516XLOC_021516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036495-exon-sc0001474-1491911889:3419..3612TCONS_00036495-exon-sc0001474-1491911889:3419..3612Clytia hemisphaericaexon
TCONS_00036495-exon-sc0001474-1510915933:3419..3612TCONS_00036495-exon-sc0001474-1510915933:3419..3612Clytia hemisphaericaexon
TCONS_00036495-exon-sc0001474-1575043694:3419..3612TCONS_00036495-exon-sc0001474-1575043694:3419..3612Clytia hemisphaericaexon
TCONS_00036495-exon-sc0001474-1491911889:3791..3883TCONS_00036495-exon-sc0001474-1491911889:3791..3883Clytia hemisphaericaexon
TCONS_00036495-exon-sc0001474-1510915933:3791..3883TCONS_00036495-exon-sc0001474-1510915933:3791..3883Clytia hemisphaericaexon
TCONS_00036495-exon-sc0001474-1575043694:3791..3883TCONS_00036495-exon-sc0001474-1575043694:3791..3883Clytia hemisphaericaexon
TCONS_00036495-exon-sc0001474-1491911889:4019..4110TCONS_00036495-exon-sc0001474-1491911889:4019..4110Clytia hemisphaericaexon
TCONS_00036495-exon-sc0001474-1510915933:4019..4110TCONS_00036495-exon-sc0001474-1510915933:4019..4110Clytia hemisphaericaexon
TCONS_00036495-exon-sc0001474-1575043694:4019..4110TCONS_00036495-exon-sc0001474-1575043694:4019..4110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001474supercontigsc0001474:3419..4110 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.534536	0	0.997699	0	0.354917	0	0	0	0	0	0.751612	0.621804	0.270194	0.261807	1.43943	0.66296	1.14571	0.887675	1.35648	0.419885	1.91621	1.07572	0.600422	0	0	1.65218	1.06314	0	0.437142	0.881779
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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