TCONS_00036494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036494
Unique NameTCONS_00036494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036494 ID=TCONS_00036494|Name=TCONS_00036494|organism=Clytia hemisphaerica|type=transcript|length=357bp
GACTTTGTTGTAGCTTCTGTTGACTCTGTCGTAGCTTCTGTTAACTTTGT
CGTAGCTTCTGTTGACTTTGTTGTAGCTTCTGTTGACTCTGTCGTAGCTT
CTGTTAACTTTGTCGTAGCTTCTGTTGACTTTGTTGTAGCTTCTGTTGAC
TCTGTCGTAGCTTCTGTTAACTTTGTCGTAGCTTCTGTTGACTTTGTTGT
AGCTTCTGTTGACTCTGTCGTAGCTTCTGTTAACTTTGTCGTAGCTTCTG
TTGACTTTGTTGTAGCTTCTGTTGACTCTGTCGTAGCTTCTGTTGACTTT
GTTGTAGCTTCTGTTGACTTTGTTGTAGCTTCTGTTGACTTTGTTGTGGC
TTCTGTT
Run BLAST on NCBI

protein sequence of TCONS_00036494-protein

>TCONS_00036494-protein ID=TCONS_00036494-protein|Name=TCONS_00036494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
DFVVASVDSVVASVNFVVASVDFVVASVDSVVASVNFVVASVDFVVASVD
SVVASVNFVVASVDFVVASVDSVVASVNFVVASVDFVVASVDSVVASVDF
VVASVDFVVASVDFVVASV
Run BLAST on NCBI

transcript from alignment at sc0001472:20985..21341

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036494 ID=TCONS_00036494|Name=TCONS_00036494|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at sc0001472:20985..21341 (Clytia hemisphaerica)
AACAGAAGCCACAACAAAGTCAACAGAAGCTACAACAAAGTCAACAGAAG
CTACAACAAAGTCAACAGAAGCTACGACAGAGTCAACAGAAGCTACAACA
AAGTCAACAGAAGCTACGACAAAGTTAACAGAAGCTACGACAGAGTCAAC
AGAAGCTACAACAAAGTCAACAGAAGCTACGACAAAGTTAACAGAAGCTA
CGACAGAGTCAACAGAAGCTACAACAAAGTCAACAGAAGCTACGACAAAG
TTAACAGAAGCTACGACAGAGTCAACAGAAGCTACAACAAAGTCAACAGA
AGCTACGACAAAGTTAACAGAAGCTACGACAGAGTCAACAGAAGCTACAA
CAAAGTC

Coding sequence (CDS) from alignment at sc0001472:20985..21341

>TCONS_00036494 ID=TCONS_00036494|Name=TCONS_00036494|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0001472:20985..21341 (Clytia hemisphaerica)
AACAGAAGCCACAACAAAGTCAACAGAAGCTACAACAAAGTCAACAGAAG
CTACAACAAAGTCAACAGAAGCTACGACAGAGTCAACAGAAGCTACAACA
AAGTCAACAGAAGCTACGACAAAGTTAACAGAAGCTACGACAGAGTCAAC
AGAAGCTACAACAAAGTCAACAGAAGCTACGACAAAGTTAACAGAAGCTA
CGACAGAGTCAACAGAAGCTACAACAAAGTCAACAGAAGCTACGACAAAG
TTAACAGAAGCTACGACAGAGTCAACAGAAGCTACAACAAAGTCAACAGA
AGCTACGACAAAGTTAACAGAAGCTACGACAGAGTCAACAGAAGCTACAA
CAAAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021515XLOC_021515Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036494-exon-sc0001472-1491911889:20985..21341TCONS_00036494-exon-sc0001472-1491911889:20985..21341Clytia hemisphaericaexon
TCONS_00036494-exon-sc0001472-1510915933:20985..21341TCONS_00036494-exon-sc0001472-1510915933:20985..21341Clytia hemisphaericaexon
TCONS_00036494-exon-sc0001472-1575043694:20985..21341TCONS_00036494-exon-sc0001472-1575043694:20985..21341Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036494-proteinTCONS_00036494-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001472supercontigsc0001472:20985..21341 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.93961	2.04361	0.308191	0.288524	0	0.250213	0	0.159648	1.11599	2.81462	22.8678	6.57338	7.73796	11.4356	0.254822	0.533305	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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