TCONS_00036493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036493
Unique NameTCONS_00036493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036493 ID=TCONS_00036493|Name=TCONS_00036493|organism=Clytia hemisphaerica|type=transcript|length=439bp
GCAATGTAAAGTTTCCCTCAAATGAAGcaaattaccctttttcacgggta
CCAATCTAATCTAACATTATCAAACGATAGGTGTTAGATTACCGCAACCA
AGTCAAACAGTCACGAAACTAAAAGATTCTGGCAAAGTTGAATTATGTTC
gaacgaccctgccgattccccggACTCCAGCGATTTTCTTGTTGCgtata
atatatgttacaaaNgaccctgccgattccccggactccagcgattttct
tgttgcgtgtccgaggattttaacattactttttgaAACTTACCCCGGAC
TGAACGCATGGTCTGCGAGACGTACTTAAACAATTGGGCGATCACACATG
GGCGTTAATTTCACCATAACCTATTCTGCCTGCTTTCATGCGAACTTAGT
TGACCATGCGTTAACTCGTGACAACACGTTCACTTATCC
Run BLAST on NCBI

transcript from alignment at sc0001472:6976..7414

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036493 ID=TCONS_00036493|Name=TCONS_00036493|organism=Clytia hemisphaerica|type=transcript|length=439bp|location=Sequence derived from alignment at sc0001472:6976..7414 (Clytia hemisphaerica)
GGATAAGTGAACGTGTTGTCACGAGTTAACGCATGGTCAACTAAGTTCGC
ATGAAAGCAGGCAGAATAGGTTATGGTGAAATTAACGCCCATGTGTGATC
GCCCAATTGTTTAAGTACGTCTCGCAGACCATGCGTTCAGTCCGGGGTAA
GTTtcaaaaagtaatgttaaaatcctcggacacgcaacaagaaaatcgct
ggagtccggggaatcggcagggtcNtttgtaacatatattatacGCAACA
AGAAAATCGCTGGAGTccggggaatcggcagggtcgttcGAACATAATTC
AACTTTGCCAGAATCTTTTAGTTTCGTGACTGTTTGACTTGGTTGCGGTA
ATCTAACACCTATCGTTTGATAATGTTAGATTAGATTGGtacccgtgaaa
aagggtaatttgCTTCATTTGAGGGAAACTTTACATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021514XLOC_021514Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036493-exon-sc0001472-1491911889:6976..7414TCONS_00036493-exon-sc0001472-1491911889:6976..7414Clytia hemisphaericaexon
TCONS_00036493-exon-sc0001472-1510915933:6976..7414TCONS_00036493-exon-sc0001472-1510915933:6976..7414Clytia hemisphaericaexon
TCONS_00036493-exon-sc0001472-1575043694:6976..7414TCONS_00036493-exon-sc0001472-1575043694:6976..7414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001472supercontigsc0001472:6976..7414 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.663926	0.181432	0.524148	1.01186	0.241141	0.351005	1.34892	0.954281	0.163646	0.439505	2.56654	1.19826	0.559867	0.608524	0.350355	0	0.120264	0.654564	0.216922	0.773167	0.769037	1.29394	0.270729	0.74235	1.49697	0.52128	0.573925	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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