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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036492 ID=TCONS_00036492|Name=TCONS_00036492|organism=Clytia hemisphaerica|type=transcript|length=1057bp
GGACGGCACagaaagaaagatgtcttctTTACTATCTGTTATTCAGATAT
TTGTGGCATAGGTCATACTTTGCAGAACAGAAGCAACAAACACTACAATC
ACACCACCAACATACCAAGGGGCTTGTGAAGACGAATGGGTTTTCCGTAA
TGGTTTTTGTTATTGGAGTTCATCATTCAATAaaggagcttatcgaataa
acAGTTGGTTTGGAGCTGAGAGAGACTGCAGAAGAAAAAGAGCTGACCTG
GTTTCCATTCACAGCGaaagtgaaaataatttcaTCCACAAGATGACTCA
TTGTGCTAAGacATGGACTGGGTTAACGACAATAGACGAGTCAAAAAGAG
CAAAAACCGAGGGCAACGAATGGATTGACGGTACAAGCCGAACCTATTTG
AATTGGTATGCTGGTCATCCACATGGAGATTCTAATCATCGTTACAATTG
TTATTTTCAACACGACAGCACAGGTGGTAAATGGGCCAATGCTTTGTGTA
CTGCAGACCGTATGTATTACGTTTGTAAAGAACCTGCTGAAATAGCAAAC
ATCCGCGCGGCTGCTTTCTCCCATAGAATGCGCGCTAAACGAGCGGCTGA
CAAGTGTGGAAAAGGATGGAAACTTTCAGGTAATGATAAATGTCTTCATG
TCAACAATACACGTGTCGATTTCTTCGAAGCCCTCTTGCAATGCCAATCT
TTAGGAGCTCACTTGACGACCATGCACAGTGCACAAGAGGAAGCCCAACT
TTCGCGCGCCTTTGATTCGTGCGATACACCGTGGATCGGATTGGAAAATA
CCGACCCGAATCGAGTGAATTCGAACGCTGGTTGGAAATGGAACGACAAC
ACAGTTCTTAAATATTCGAACTGGCAGAGCACCACACCGACCAATGATAA
AACGAAGCAATGTGGAAAGCTAGTTCGTGGATTGTCATGGGTCAACACAC
ATTGTTGGGAATTGCTACCCTTCATCTGCCAgaagaatatttaaattttt
gtatgatacgaaaaaagattttgtagTATATATGTTTCCATAAGAGATTC
TTCAGAT Run BLAST on NCBI protein sequence of TCONS_00036492-protein >TCONS_00036492-protein ID=TCONS_00036492-protein|Name=TCONS_00036492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MTHCAKTWTGLTTIDESKRAKTEGNEWIDGTSRTYLNWYAGHPHGDSNHR
YNCYFQHDSTGGKWANALCTADRMYYVCKEPAEIANIRAAAFSHRMRAKR
AADKCGKGWKLSGNDKCLHVNNTRVDFFEALLQCQSLGAHLTTMHSAQEE
AQLSRAFDSCDTPWIGLENTDPNRVNSNAGWKWNDNTVLKYSNWQSTTPT
NDKTKQCGKLVRGLSWVNTHCWELLPFICQKNI Run BLAST on NCBI transcript from alignment at sc0001472:12424..14108- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036492 ID=TCONS_00036492|Name=TCONS_00036492|organism=Clytia hemisphaerica|type=transcript|length=1685bp|location=Sequence derived from alignment at sc0001472:12424..14108- (Clytia hemisphaerica)
GGACGGCACAGAAAGAAAGATGTCTTCTTTACTATCTGTTATTCAGATAT
TTGTGGCATAGGTCATACTTTGCAGAACAGAAGCAACAAACACTACAATC
ACACCACCAACATACCAAGGTTTGTGTTGTCTTCTTTTCAGGAAGGATAG
GAAAATTAAAACACTCAATAATGGTTAATCACAATTCTTTCTTGCTCCTA
TACTAGCGTAAAATTCAATTATCGATGCATAACCTTTAAGAATCCAGATG
AAAATTTCAAAAGATATTAAAAGTAAAAATCTAACATTTTTTCATTTTTT
TCGGAAAGTTACCCCCCCCCCCCAGTACAACAACAATACTCAACTTTCAA
TAATGATAGACAGCATTTGAATTTTTAGAATTTATTTGTGGATCTCAGGG
TCAGACAAAAATGAACAATATCTTTGAATGATTCCTGTATATTTCTTTCT
CGCGTTTCAGGGGCTTGTGAAGACGAATGGGTTTTCCGTAATGGTTTTTG
TTATTGGAGTTCATCATTCAATAAAGGAGCTTATCGAATAAACAGTTGGT
TTGGAGCTGAGAGAGACTGCAGAAGAAAAAGAGCTGACCTGGTTTCCATT
CACAGCGAAAGTGAAAATAATTTCATCCACAAGATGACTCATTGTGCTAA
GGTGAGAATACTTTTTAATACGGATCATTGTGCGAGGGTGAGAATAGAGT
CAAACATTATTGATTCAAGTTGACTAAACTTCTTATTACCAACTCATTCA
GAGTTTCATTGTGCGTCTACTATATCTCAAATTCAAGAAAGCAATGCGAA
AGAAATCTCATTGTAGAAGAGAGTTACAGACTACAAGTAATATATTATGC
TGCATTCACTTTCTCAAAGCAGCCAAAGAGTATATCGTCCATTATAATCA
GGTGAATTCATTGATTTTACTATAAATGATTTTTTTAGACATGGACTGGG
TTAACGACAATAGACGAGTCAAAAAGAGCAAAAACCGAGGGCAACGAATG
GATTGACGGTACAAGCCGAACCTATTTGAATTGGTATGCTGGTCATCCAC
ATGGAGATTCTAATCATCGTTACAATTGTTATTTTCAACACGACAGCACA
GGTGGTAAATGGGCCAATGCTTTGTGTACTGCAGACCGTATGTATTACGT
TTGTAAAGAACCTGCTGAAATAGCAAACATCCGCGCGGCTGCTTTCTCCC
ATAGAATGCGCGCTAAACGAGCGGCTGACAAGTGTGGAAAAGGATGGAAA
CTTTCAGGTAATGATAAATGTCTTCATGTCAACAATACACGTGTCGATTT
CTTCGAAGCCCTCTTGCAATGCCAATCTTTAGGAGCTCACTTGACGACCA
TGCACAGTGCACAAGAGGAAGCCCAACTTTCGCGCGCCTTTGATTCGTGC
GATACACCGTGGATCGGATTGGAAAATACCGACCCGAATCGAGTGAATTC
GAACGCTGGTTGGAAATGGAACGACAACACAGTTCTTAAATATTCGAACT
GGCAGAGCACCACACCGACCAATGATAAAACGAAGCAATGTGGAAAGCTA
GTTCGTGGATTGTCATGGGTCAACACACATTGTTGGGAATTGCTACCCTT
CATCTGCCAGAAGAATATTTAAATTTTTGTATGATACGAAAAAAGATTTT
GTAGTATATATGTTTCCATAAGAGATTCTTCAGAT Coding sequence (CDS) from alignment at sc0001472:12424..14108- >TCONS_00036492 ID=TCONS_00036492|Name=TCONS_00036492|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0001472:12424..14108- (Clytia hemisphaerica)
ACATGGACTGGGTTAACGACAATAGACGAGTCAAAAAGAGCAAAAACCGA
GGGCAACGAATGGATTGACGGTACAAGCCGAACCTATTTGAATTGGTATG
CTGGTCATCCACATGGAGATTCTAATCATCGTTACAATTGTTATTTTCAA
CACGACAGCACAGGTGGTAAATGGGCCAATGCTTTGTGTACTGCAGACCG
TATGTATTACGTTTGTAAAGAACCTGCTGAAATAGCAAACATCCGCGCGG
CTGCTTTCTCCCATAGAATGCGCGCTAAACGAGCGGCTGACAAGTGTGGA
AAAGGATGGAAACTTTCAGGTAATGATAAATGTCTTCATGTCAACAATAC
ACGTGTCGATTTCTTCGAAGCCCTCTTGCAATGCCAATCTTTAGGAGCTC
ACTTGACGACCATGCACAGTGCACAAGAGGAAGCCCAACTTTCGCGCGCC
TTTGATTCGTGCGATACACCGTGGATCGGATTGGAAAATACCGACCCGAA
TCGAGTGAATTCGAACGCTGGTTGGAAATGGAACGACAACACAGTTCTTA
AATATTCGAACTGGCAGAGCACCACACCGACCAATGATAAAACGAAGCAA
TGTGGAAAGCTAGTTCGTGGATTGTCATGGGTCAACACACATTGTTGGGA
ATTGCTACCCTTCATCTGCCAGAAGAATATTTAAATGACTCATTGTGCTA
AGACATGGACTGGGTTAACGACAATAGACGAGTCAAAAAGAGCAAAAACC
GAGGGCAACGAATGGATTGACGGTACAAGCCGAACCTATTTGAATTGGTA
TGCTGGTCATCCACATGGAGATTCTAATCATCGTTACAATTGTTATTTTC
AACACGACAGCACAGGTGGTAAATGGGCCAATGCTTTGTGTACTGCAGAC
CGTATGTATTACGTTTGTAAAGAACCTGCTGAAATAGCAAACATCCGCGC
GGCTGCTTTCTCCCATAGAATGCGCGCTAAACGAGCGGCTGACAAGTGTG
GAAAAGGATGGAAACTTTCAGGTAATGATAAATGTCTTCATGTCAACAAT
ACACGTGTCGATTTCTTCGAAGCCCTCTTGCAATGCCAATCTTTAGGAGC
TCACTTGACGACCATGCACAGTGCACAAGAGGAAGCCCAACTTTCGCGCG
CCTTTGATTCGTGCGATACACCGTGGATCGGATTGGAAAATACCGACCCG
AATCGAGTGAATTCGAACGCTGGTTGGAAATGGAACGACAACACAGTTCT
TAAATATTCGAACTGGCAGAGCACCACACCGACCAATGATAAAACGAAGC
AATGTGGAAAGCTAGTTCGTGGATTGTCATGGGTCAACACACATTGTTGG
GAATTGCTACCCTTCATCTGCCAGAAGAATATTTAAATGACTCATTGTGC
TAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036492-exon-sc0001472-1575043694:13990..14108 | TCONS_00036492-exon-sc0001472-1575043694:13990..14108 | Clytia hemisphaerica | exon |
| TCONS_00036492-exon-sc0001472-1575043694:13458..13648 | TCONS_00036492-exon-sc0001472-1575043694:13458..13648 | Clytia hemisphaerica | exon |
| TCONS_00036492-exon-sc0001472-1575043694:12424..13170 | TCONS_00036492-exon-sc0001472-1575043694:12424..13170 | Clytia hemisphaerica | exon |
| TCONS_00036492-exon-sc0001472-1510915933:13990..14108 | TCONS_00036492-exon-sc0001472-1510915933:13990..14108 | Clytia hemisphaerica | exon |
| TCONS_00036492-exon-sc0001472-1510915933:13458..13648 | TCONS_00036492-exon-sc0001472-1510915933:13458..13648 | Clytia hemisphaerica | exon |
| TCONS_00036492-exon-sc0001472-1510915933:12424..13170 | TCONS_00036492-exon-sc0001472-1510915933:12424..13170 | Clytia hemisphaerica | exon |
| TCONS_00036492-exon-sc0001472-1491911889:13990..14108 | TCONS_00036492-exon-sc0001472-1491911889:13990..14108 | Clytia hemisphaerica | exon |
| TCONS_00036492-exon-sc0001472-1491911889:13458..13648 | TCONS_00036492-exon-sc0001472-1491911889:13458..13648 | Clytia hemisphaerica | exon |
| TCONS_00036492-exon-sc0001472-1491911889:12424..13170 | TCONS_00036492-exon-sc0001472-1491911889:12424..13170 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001472 | supercontig | sc0001472:12424..14108 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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