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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036487 ID=TCONS_00036487|Name=TCONS_00036487|organism=Clytia hemisphaerica|type=transcript|length=762bp
GTATATAACCTCCCTAGAAGTTCTTTATTATCCACCACTaattaaatgaa
attatttttcatgtttAGGACACGAGATAGCTGATCACAGCATATCACAC
AAGCTTGACAACGATTATTGGAAGGATGGTTCCTACCAAACTTTCATCAA
CGAGATTATTCCCTTACGAAAACAATTCCACGACGAGGGAATCACCAAAG
TGACAGGATATCGCCAGCCTCTCTTACAGACGGGTGGAGATAACACCTTC
AGTGTTTTACACAACTTTGGATTTCAATATGATTCGAGTATGGTGACAAA
ATTGAATGATCGGTTCTGGCCGTACACCTTGGACCACAAAATTCCCAATT
GCGTCATTGAACCATGTCCAACAAAATCTTACAAAGGCTTATGGGAAATT
CCAATTGAAGCCATGGAAGGACCACATGGTGAAGCATGCTCACTCTACGA
TGATTTTCCGTGTTGGAAACAACTGAAGACGTCGCAAGATGTATACACGT
ATATGAAGAAAAACTTTGACAAACATTTCGAAACTGGAACTTCTCCGTTC
CCTATTTGGGGCCATCTTCATAATTTGGTGCGGGATGCAAACACCTTCAG
ACGCCAAGGTTTACAGAAGTTTCTGGACGAGATAGCGGCAAGAGATGATA
CGTATTTCGTAACCAACCAACAACTTCTCGATTGGATGAAAGATCCCAAA
ACTTTGAGCCAATTGAAAAACAGAGCTACTGCTGGAGCTTTCTCatgtaa
agaaaataaagt Run BLAST on NCBI protein sequence of TCONS_00036487-protein >TCONS_00036487-protein ID=TCONS_00036487-protein|Name=TCONS_00036487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MVTKLNDRFWPYTLDHKIPNCVIEPCPTKSYKGLWEIPIEAMEGPHGEAC
SLYDDFPCWKQLKTSQDVYTYMKKNFDKHFETGTSPFPIWGHLHNLVRDA
NTFRRQGLQKFLDEIAARDDTYFVTNQQLLDWMKDPKTLSQLKNRATAGA
FSCKENK Run BLAST on NCBI transcript from alignment at sc0001472:35488..38363+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036487 ID=TCONS_00036487|Name=TCONS_00036487|organism=Clytia hemisphaerica|type=transcript|length=2876bp|location=Sequence derived from alignment at sc0001472:35488..38363+ (Clytia hemisphaerica)
GTATATAACCTCCCTAGAAGTTCTTTATTATCCACCACTaattaaatgaa
attatttttcatgtttAGGACACGAGATAGCTGATCACAGCATATCACAC
AAGCTTGACAACGATTATTGGAAGGATGGTTCCTACCAAACTTTCATCAA
CGAGATTATTCCCTTACGAAAACAATTCCACGACGAGGGAATCACCAAAG
TGACAGGATATCGCCAGCCTCTCTTACAGACGGGTGGAGATAACACCTTC
AGTGTTTTACACAACTTTGGATTTCAATATGATTCGAGTATGGTGACAAA
ATTGAATGATCGGTTCTGGCCGTACACCTTGGACCACAAAATTCCCAATT
GCGTCATTGAACCATGTCCAACAAGTaagttttcagtgtttttttcaaca
ttcattcAGCGTTAAaaggacgttgtgaacattaaataaacgttgaaccA
ACGTTGTGCGCCACCTGGGTAGGTGAAAATCTGTTCTTTTACATTCTTCG
GTCCTGTTAGGGCTCAAGTTTGCCCCGGGTTATCAAGTCAATTTTTTGTA
AATCACTGATTAAGAGGCCCGTCCAATCTACTGTATAGCTAGGCTTCGTA
GATAAAAGGACCTGGTTATCTTGTAACTTAGGCTAAAAACCCGTCTTGAA
TTTTTCTTCACATAGAATCTTACAAAGGCTTATGGGAAATTCCAATTGAA
GCCATGGAAGGACCACATGGTGAAGCATGCTCACTCTACGATGATTTTCC
GTGTTGGAAACAACTGAAGACGTCGCAAGATGTATACACGTATATGAAGA
AAAACTTTGACAAACATTTCGAAACTGGAACTTCTCCGTTCCCTATTTGG
GGCCATCTTCATAATTTGGTGCGGGATGCAAACACCTTCAGACGCCAAGG
TATGAAAACCTTCCCATCCTCAGATTATTTTCTCGCGACTTCATTGGCAA
AAAGAACTCAAGAACTCGTTGAAGTTATAGACAAAGAAACATTACTCCGT
CCCAACATTTGAATATCCTAGCGAACATCCCCGTTTTCATATCCTGAATT
ATAGCGAAAGTTCAAAGTTCATGCATTGTCTTTTTCCGATCCTTCAAACC
CACCTTCCATCCgtaaaaaacaacattttttagattttcacgTCATCTTG
AAATACTATTGCAAATATTACATATTATGATAAAGGATATTATAACACAT
CCTAAAAAGCCCTTTTGATTTCCTCTTCTTCATTGAAGAAAGTTGTATGC
AAGACTGGAGTTCTCCTGACCTTTAAAGGGTTTCTATTTCTTAAAATCTC
CTCTTTTTCAAGCATGCCTTAGATAGTTGAATGTGAGACGGGGGTACAGA
AATATGTATTACCGAAGGCTGCAGTAAAATCTCAGATGTAGtatttgaag
ccacttatttgcTACATAAGTTGCATGGCTCGCATGGGAAGTTATATTCG
CCACGGAAACGTAACCGCGAAAACAAAGGAGCTTGTTTATGTATTAGAGT
TGATGCAAAGTAGTACAAATTTTACTGTGCTCGAGGATAATCAATATCAA
TTCAATAAAAGCTATTCGAACAATTATCTAGAATGTGGCGCAAATTTTCA
GGCTTCAAATTTGCTTGCCAGGGAAAGATTCCTCTGTAGTCTTCGGGTAT
GGGGTATATCTCGTCGGTCTTCAATTTCTTATAATTCAAAAACTCTTCTT
TAATAACAGTAAACAAAACATGTGGAGCTTGGAATTGCTAATTACCAtca
agaaattcaaaacaaCATTGTAAAACCTCAATATAGCCTACACAGACCTC
AATATAACATTCCTACCGTAATGACTTCCGGATCAAATTTCCGTACATAA
ACATGTTTTGTTTCCGGCACTTACGTTCATCACCACTAATTACTAAACAA
AAATATCATTGAACCAATTATCTTGAACCACAGCATTGAGGTTTTTCTCA
ATATTTGCGGCTTGTCTTAATTTCTTTCCATACACTCGTTGTAAATATAG
TCTCCAATCTCCATGcagggcgaaataagagatttccaatcctggatTTC
CATATACATTTGTAAATATCGAAGTATGACTTTTCTATACTTCTAGAGTT
gaggaaatatcatattttcaaaatatttccaaaatgtttaaatgaatttc
agatttgaaaatatcatgaaatataaTATCGCCCAGTGCCAGTAATAGTC
CTCCCCACATAACCTTCATCTCTGAGTGGCAAGTAATATATAGAATTCTT
TAGAATTCTTATCTTCAATAATTCTTTAAGACGAAAAAAAGGCACTAGAC
CCTGAAATGTTTGATGAAAATTGGAATCACTCTCCAAGGCCGAGGGGCTG
TATACATAGgctatttcacagtcgaaatgaatcatgggtaatcaggactg
gttgcgctctagtaacgacttccggttggctagacgcaaaatttttcaag
actttggaccaatagtaaatcgtcattagcgcgcagtggtcctgattacc
cattacgctttgcgactgtgaaatgaccTATCTAAGTTAAGTTTTACAAG
ggattttaaaatataaattgagAAAAACTGGAAAGCCAAACTTAATATTC
TAATGACTCTGATTACTCTCATCAAGCCTCTGGCTTAATGACTATTATAC
CCCTATCAAATCTTAGACGAATGGAAAGTTAAAAAGCAAAATTCAACCTG
TTAAAATTTATTACCCTTTTAGGTTTACAGAAGTTTCTGGACGAGATAGC
GGCAAGAGATGATACGTATTTCGTAACCAACCAACAACTTCTCGATTGGA
TGAAAGATCCCAAAACTTTGAGCCAATTGAAAAACAGAGCTACTGCTGGA
GCTTTCTCatgtaaagaaaataaagt Coding sequence (CDS) from alignment at sc0001472:35488..38363+ >TCONS_00036487 ID=TCONS_00036487|Name=TCONS_00036487|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at sc0001472:35488..38363+ (Clytia hemisphaerica)
ATGGTGACAAAATTGAATGATCGGTTCTGGCCGTACACCTTGGACCACAA
AATTCCCAATTGCGTCATTGAACCATGTCCAACAAAATCTTACAAAGGCT
TATGGGAAATTCCAATTGAAGCCATGGAAGGACCACATGGTGAAGCATGC
TCACTCTACGATGATTTTCCGTGTTGGAAACAACTGAAGACGTCGCAAGA
TGTATACACGTATATGAAGAAAAACTTTGACAAACATTTCGAAACTGGAA
CTTCTCCGTTCCCTATTTGGGGCCATCTTCATAATTTGGTGCGGGATGCA
AACACCTTCAGACGCCAAGGTTTACAGAAGTTTCTGGACGAGATAGCGGC
AAGAGATGATACGTATTTCGTAACCAACCAACAACTTCTCGATTGGATGA
AAGATCCCAAAACTTTGAGCCAATTGAAAAACAGAGCTACTGCTGGAGCT
TTCTCatgtaaagaaaataaaATGGTGACAAAATTGAATGATCGGTTCTG
GCCGTACACCTTGGACCACAAAATTCCCAATTGCGTCATTGAACCATGTC
CAACAAAATCTTACAAAGGCTTATGGGAAATTCCAATTGAAGCCATGGAA
GGACCACATGGTGAAGCATGCTCACTCTACGATGATTTTCCGTGTTGGAA
ACAACTGAAGACGTCGCAAGATGTATACACGTATATGAAGAAAAACTTTG
ACAAACATTTCGAAACTGGAACTTCTCCGTTCCCTATTTGGGGCCATCTT
CATAATTTGGTGCGGGATGCAAACACCTTCAGACGCCAAGGTTTACAGAA
GTTTCTGGACGAGATAGCGGCAAGAGATGATACGTATTTCGTAACCAACC
AACAACTTCTCGATTGGATGAAAGATCCCAAAACTTTGAGCCAATTGAAA
AACAGAGCTACTGCTGGAGCTTTCTCatgtaaagaaaataaaATGGTGAC
AAAATTGAATGATCGGTTCTGGCCGTACACCTTGGACCACAAAATTCCCA
ATTGCGTCATTGAACCATGTCCAACAAAATCTTACAAAGGCTTATGGGAA
ATTCCAATTGAAGCCATGGAAGGACCACATGGTGAAGCATGCTCACTCTA
CGATGATTTTCCGTGTTGGAAACAACTGAAGACGTCGCAAGATGTATACA
CGTATATGAAGAAAAACTTTGACAAACATTTCGAAACTGGAACTTCTCCG
TTCCCTATTTGGGGCCATCTTCATAATTTGGTGCGGGATGCAAACACCTT
CAGACGCCAAGGTTTACAGAAGTTTCTGGACGAGATAGCGGCAAGAGATG
ATACGTATTTCGTAACCAACCAACAACTTCTCGATTGGATGAAAGATCCC
AAAACTTTGAGCCAATTGAAAAACAGAGCTACTGCTGGAGCTTTCTCatg
taaagaaaataaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036487-exon-sc0001472-1491911889:35488..35861 | TCONS_00036487-exon-sc0001472-1491911889:35488..35861 | Clytia hemisphaerica | exon |
| TCONS_00036487-exon-sc0001472-1510915933:35488..35861 | TCONS_00036487-exon-sc0001472-1510915933:35488..35861 | Clytia hemisphaerica | exon |
| TCONS_00036487-exon-sc0001472-1575043694:35488..35861 | TCONS_00036487-exon-sc0001472-1575043694:35488..35861 | Clytia hemisphaerica | exon |
| TCONS_00036487-exon-sc0001472-1491911889:36153..36386 | TCONS_00036487-exon-sc0001472-1491911889:36153..36386 | Clytia hemisphaerica | exon |
| TCONS_00036487-exon-sc0001472-1510915933:36153..36386 | TCONS_00036487-exon-sc0001472-1510915933:36153..36386 | Clytia hemisphaerica | exon |
| TCONS_00036487-exon-sc0001472-1575043694:36153..36386 | TCONS_00036487-exon-sc0001472-1575043694:36153..36386 | Clytia hemisphaerica | exon |
| TCONS_00036487-exon-sc0001472-1491911889:38210..38363 | TCONS_00036487-exon-sc0001472-1491911889:38210..38363 | Clytia hemisphaerica | exon |
| TCONS_00036487-exon-sc0001472-1510915933:38210..38363 | TCONS_00036487-exon-sc0001472-1510915933:38210..38363 | Clytia hemisphaerica | exon |
| TCONS_00036487-exon-sc0001472-1575043694:38210..38363 | TCONS_00036487-exon-sc0001472-1575043694:38210..38363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001472 | supercontig | sc0001472:35488..38363 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011330 | Glyco_hydro/deAcase_b/a-brl |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
The following BLAST results are available for this feature:
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