TCONS_00036486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036486
Unique NameTCONS_00036486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036486 ID=TCONS_00036486|Name=TCONS_00036486|organism=Clytia hemisphaerica|type=transcript|length=323bp
CTTTCAGTTTTATGACAACCACTACTACAACGACTCCTGCACCGACTCCG
GGCGCTTTTGATGATGCAACGGTGTGCGATCCATCGACGTGCAACAGCAA
TACATGTCGGTGTCCGTCACCTAAAACACCTGGAGGTCTATCCAAAGAAG
ACACACCCAAGATAATTCTCTTTGGTATGGACGATGGAATGACACAAGAG
AAATATGACCTTTTCGTGGATATGACTTACGGAAAGGCTAATCCTAATGG
ATGTCCAGTCCAAGCCACTTTCTTTATCTCCGCTGACTACACTTTCCACG
CTATTGCCAAGAAACTTTATGAC
Run BLAST on NCBI

protein sequence of TCONS_00036486-protein

>TCONS_00036486-protein ID=TCONS_00036486-protein|Name=TCONS_00036486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
FSFMTTTTTTTPAPTPGAFDDATVCDPSTCNSNTCRCPSPKTPGGLSKED
TPKIILFGMDDGMTQEKYDLFVDMTYGKANPNGCPVQATFFISADYTFHA
IAKKLYD
Run BLAST on NCBI

transcript from alignment at sc0001472:34552..35122+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036486 ID=TCONS_00036486|Name=TCONS_00036486|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at sc0001472:34552..35122+ (Clytia hemisphaerica)
CTTTCAGTTTTATGACAACCACTACTACAACGACTCCTGCACCGACTCCG
GGCGCTTTTGGTGAGTGAGTTTTCAATGCATGTTTAAACCTGTGTTAAAC
TATCCATTTTCATCCTTCTGCTTGTTCAAGGTTTTAAACCATGGTCCTTT
TTTCTTTAATCAACATCAATATCTCCAAAATTACTTATCATTATTTCTCC
TCGATAACCTGGACAAATTAACTCAGTCTCTCCTATCTAAAAGATTTCGC
TGTATTTTTACTTCTGGTTTCCAAAGAAAACTTTCACCACGGATATCTTC
ATTTACAGATGATGCAACGGTGTGCGATCCATCGACGTGCAACAGCAATA
CATGTCGGTGTCCGTCACCTAAAACACCTGGAGGTCTATCCAAAGAAGAC
ACACCCAAGATAATTCTCTTTGGTATGGACGATGGAATGACACAAGAGAA
ATATGACCTTTTCGTGGATATGACTTACGGAAAGGCTAATCCTAATGGAT
GTCCAGTCCAAGCCACTTTCTTTATCTCCGCTGACTACACTTTCCACGCT
ATTGCCAAGAAACTTTATGAC

Coding sequence (CDS) from alignment at sc0001472:34552..35122+

>TCONS_00036486 ID=TCONS_00036486|Name=TCONS_00036486|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0001472:34552..35122+ (Clytia hemisphaerica)
TTCAGTTTTATGACAACCACTACTACAACGACTCCTGCACCGACTCCGGG
CGCTTTTGATGATGCAACGGTGTGCGATCCATCGACGTGCAACAGCAATA
CATGTCGGTGTCCGTCACCTAAAACACCTGGAGGTCTATCCAAAGAAGAC
ACACCCAAGATAATTCTCTTTGGTATGGACGATGGAATGACACAAGAGAA
ATATGACCTTTTCGTGGATATGACTTACGGAAAGGCTAATCCTAATGGAT
GTCCAGTCCAAGCCACTTTCTTTATCTCCGCTGACTACACTTTCCACGCT
ATTGCCAAGAAACTTTATGACTTCAGTTTTATGACAACCACTACTACAAC
GACTCCTGCACCGACTCCGGGCGCTTTTGATGATGCAACGGTGTGCGATC
CATCGACGTGCAACAGCAATACATGTCGGTGTCCGTCACCTAAAACACCT
GGAGGTCTATCCAAAGAAGACACACCCAAGATAATTCTCTTTGGTATGGA
CGATGGAATGACACAAGAGAAATATGACCTTTTCGTGGATATGACTTACG
GAAAGGCTAATCCTAATGGATGTCCAGTCCAAGCCACTTTCTTTATCTCC
GCTGACTACACTTTCCACGCTATTGCCAAGAAACTTTATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021509XLOC_021509Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036486-proteinTCONS_00036486-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036486-exon-sc0001472-1491911889:34552..34611TCONS_00036486-exon-sc0001472-1491911889:34552..34611Clytia hemisphaericaexon
TCONS_00036486-exon-sc0001472-1510915933:34552..34611TCONS_00036486-exon-sc0001472-1510915933:34552..34611Clytia hemisphaericaexon
TCONS_00036486-exon-sc0001472-1575043694:34552..34611TCONS_00036486-exon-sc0001472-1575043694:34552..34611Clytia hemisphaericaexon
TCONS_00036486-exon-sc0001472-1491911889:34860..35122TCONS_00036486-exon-sc0001472-1491911889:34860..35122Clytia hemisphaericaexon
TCONS_00036486-exon-sc0001472-1510915933:34860..35122TCONS_00036486-exon-sc0001472-1510915933:34860..35122Clytia hemisphaericaexon
TCONS_00036486-exon-sc0001472-1575043694:34860..35122TCONS_00036486-exon-sc0001472-1575043694:34860..35122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001472supercontigsc0001472:34552..35122 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.331611	0	0	1.04891	2.27368	0	0.414492	1.65566	0.644784	13.4292	5.1199	6.77451	11.0141	0	0.346152	0	0	0	0	0	0	0.853387	0	0.690777	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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