TCONS_00036482 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036482
Unique NameTCONS_00036482
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036482 ID=TCONS_00036482|Name=TCONS_00036482|organism=Clytia hemisphaerica|type=transcript|length=1403bp
CAAATACATCAATGACTGCAACAACAAACTCGTACCCAGGTTGAATTCAG
CGCTTTTGGAATTCACTGGTTGAAAATGGTTGAAGTTTAGTCGAAAAATC
AGGGAAGACTGGTGACAACAAACAAATTTAGAAgtttgattttgataaaa
accttaaaataaaTACACACTACTGTCAAAACCATACGGTTACTTGGCTG
GATAGTTATCAAGAAAATGTCGTTTTTACCATCTGCCATTCAAATATTTG
TGGCATTGGTCATACTTTGCAGAACAGAAGCAACAAACACTACAATCACA
CCATCAACAGACCAAGGAGCTTGTGAAGACGAATGGGTTTTCCGTCAAGG
GTTTTGTTATTGGAGTTCATCATTCAATAGAGGAGCCTATCGAATAAACA
GTTGGTTTGGAGCTGAAAGAGAATGCAGAAGAAAAAGAGCTGACCTGGTT
TCCATCCACAGCGAAAGTGAAAATAATTTCGTCCACAAAATGACTCATTG
TGCTAGGACATGGACTGGTCTTACAGTCACCGACAATGGAAAAAGGACCC
GGCCGGAAGGTAACGAATGGATAGATGGGACAAGCCGAACCTATCTGAAC
TGGTATCCTGGATAACCTGGTGGTGATTCTTATGCTAGGCATAATTGCTA
TTATCAACACGATAGCACAGGTGGTAAATGGTCTCATGCAATGTGTACTG
CACAGCGCATGTTTTACGTTTGTAAAAAACCTGCTGAAATGGCCAACATC
CGCGCAGCCGTGTTCTCCCATAGAATGCGCGCTAAACGAGCGGCTGACAA
GTGTGGAAAAGGATGGAAACTTTCAGGTAATGATAAATGTCTTCATGTCA
ACAATACACGTGTCGATTTCTTCGAAGCCCTCTTGCAATGCCAATCTTTA
GGAGCTCACTTGACGACCATGCACAGTGCACAAGAGGAAGCCCAACTTTC
GCGCGCCTTTGATTCGTGCGATACACCGTGGATCGGATTGGAAAATACCG
ACCCGAATCGAGTGAATTCGAACGCCGGTTGGAAATGGAACGACAACACA
GTTCTTAGATATTCGAACTGGCAGAGCACCACACCGACCAATGATAAAAC
GAAGCAATGTGGAAAGCTAGTTCGTGGATTGTCATGGGTCAACACACATT
GTTGGGAATTGCTACCCTTCATCTGCCAGAAGAATATTTAACTATTtgtg
aaggaaattttttttcaatttacctATTATTGATAGGAAGTTCTGTCGCT
ATGAAAGAATAGCCTTTTCCTTAATCTAAACTGTTTTCATCTTTTTAGTA
GCTAAACTCCCCACTCCCACtgaaattataaaatatttcttaagtGTTCT
CATGTGTGCGATCACCCTAACCATAATCTTTGGTTCCTTCCTATCTTTAC
CAT
Run BLAST on NCBI

protein sequence of TCONS_00036482-protein

>TCONS_00036482-protein ID=TCONS_00036482-protein|Name=TCONS_00036482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MCTAQRMFYVCKKPAEMANIRAAVFSHRMRAKRAADKCGKGWKLSGNDKC
LHVNNTRVDFFEALLQCQSLGAHLTTMHSAQEEAQLSRAFDSCDTPWIGL
ENTDPNRVNSNAGWKWNDNTVLRYSNWQSTTPTNDKTKQCGKLVRGLSWV
NTHCWELLPFICQKNI
Run BLAST on NCBI

transcript from alignment at sc0001472:8615..10959+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036482 ID=TCONS_00036482|Name=TCONS_00036482|organism=Clytia hemisphaerica|type=transcript|length=2345bp|location=Sequence derived from alignment at sc0001472:8615..10959+ (Clytia hemisphaerica)
CAAATACATCAATGACTGCAACAACAAACTCGTACCCAGGTTGAATTCAG
CGCTTTTGGAATTCACTGGTTGAAAATGGTTGAAGTTTAGTCGAAAAATC
AGGGAAGACTGGTGACAACAAACAAATTTAGAAgtttgattttgataaaa
accttaaaataaaTACACACTACTGTCAAAACCATACGGTTACTTGGCTG
GATAGTTATCAAGAAAATGTCGTTTTTACCATCTGCCATTCAAATATTTG
TGGCATTGGTCATACTTTGCAGAACAGAAGCAACAAACACTACAATCACA
CCATCAACAGACCAAGGTTTgtgtttaaattaaaaaaaaagctgGAATTT
GATCTTTGCTTGACCTATACTTACGGCAACTTACGGCGAACAATCCAAAA
GTCTATTCAATCCaattggttcaatttaagaatTATGATGTAATCGAGCc
aaatcaaccaatcagttgAATAGAAAGTGATTTGAGTGTTGAGCAGACTT
TTGGACTGAATTCCAGCTTTTTTTGGTTGTTTATTAGAAAAGGACACAAT
CTTAACTCTTTCAGTTTGATCATAGTATAactataagaaagccgcggctt
tcttatactatggtttgaTAGTTTCTTTAGTAGGGTTCGTTATGTTGACT
TTTTCTGAAATCAGGTTATATATGTAAAGTAATGTTATTGAGAAAAATAC
TAAGAAACAATATTTAAGCCTTTATTGTCTCTACCCAAATAAGCTATCCA
TTTAGCCATAATAAGCTATCtctgttttgaaaaaaacacactttttttca
tttgcGAGAATTCTAACTCATTGCTAATTCTAGTTTTAAGAATAATCAAA
CAATGATTCTTTCTTAATATCAGGAGCTTGTGAAGACGAATGGGTTTTCC
GTCAAGGGTTTTGTTATTGGAGTTCATCATTCAATAGAGGAGCCTATCGA
ATAAACAGTTGGTTTGGAGCTGAAAGAGAATGCAGAAGAAAAAGAGCTGA
CCTGGTTTCCATCCACAGCGAAAGTGAAAATAATTTCGTCCACAAAATGA
CTCATTGTGCTAGGGTAAGAATATACGGTTGATATTTAGATGAGTATTTT
CCGATTAAGTTAAATTGACATACCATGTGTTCATGTGTAGAATCAGTTCC
AGCAACCCTCAAAATTAGTTAAATAGGTAGATTAAAAAATATGTTGCTCT
AAATCCCTCAAAATCCAttctttttataaaagcaaGCAGTCTCGAATCTC
TGATATCCAGCGAAAATATTTCTAATATCTTCTAATGGAAAAGCTAGATT
GAAAATCTTCTAACATGGAAAACTTTGACCCCATAGTAATAAAAACGGTG
TAATATCATAAGGGTTACTTTTTCTAATACCAGACAACACTTTGATCTTA
TCTAGAGAGACATAAGTTGAAAATCAAAGTTTCATGTATTCTTTTTAAGA
CATGGACTGGTCTTACAGTCACCGACAATGGAAAAAGGACCCGGCCGGAA
GGTAACGAATGGATAGATGGGACAAGCCGAACCTATCTGAACTGGTATCC
TGGATAACCTGGTGGTGATTCTTATGCTAGGCATAATTGCTATTATCAAC
ACGATAGCACAGGTGGTAAATGGTCTCATGCAATGTGTACTGCACAGCGC
ATGTTTTACGTTTGTAAAAAACCTGCTGAAATGGCCAACATCCGCGCAGC
CGTGTTCTCCCATAGAATGCGCGCTAAACGAGCGGCTGACAAGTGTGGAA
AAGGATGGAAACTTTCAGGTAATGATAAATGTCTTCATGTCAACAATACA
CGTGTCGATTTCTTCGAAGCCCTCTTGCAATGCCAATCTTTAGGAGCTCA
CTTGACGACCATGCACAGTGCACAAGAGGAAGCCCAACTTTCGCGCGCCT
TTGATTCGTGCGATACACCGTGGATCGGATTGGAAAATACCGACCCGAAT
CGAGTGAATTCGAACGCCGGTTGGAAATGGAACGACAACACAGTTCTTAG
ATATTCGAACTGGCAGAGCACCACACCGACCAATGATAAAACGAAGCAAT
GTGGAAAGCTAGTTCGTGGATTGTCATGGGTCAACACACATTGTTGGGAA
TTGCTACCCTTCATCTGCCAGAAGAATATTTAACTATTtgtgaaggaaat
tttttttcaatttacctATTATTGATAGGAAGTTCTGTCGCTATGAAAGA
ATAGCCTTTTCCTTAATCTAAACTGTTTTCATCTTTTTAGTAGCTAAACT
CCCCACTCCCACtgaaattataaaatatttcttaagtGTTCTCATGTGTG
CGATCACCCTAACCATAATCTTTGGTTCCTTCCTATCTTTACCAT

Coding sequence (CDS) from alignment at sc0001472:8615..10959+

>TCONS_00036482 ID=TCONS_00036482|Name=TCONS_00036482|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0001472:8615..10959+ (Clytia hemisphaerica)
ATGTGTACTGCACAGCGCATGTTTTACGTTTGTAAAAAACCTGCTGAAAT
GGCCAACATCCGCGCAGCCGTGTTCTCCCATAGAATGCGCGCTAAACGAG
CGGCTGACAAGTGTGGAAAAGGATGGAAACTTTCAGGTAATGATAAATGT
CTTCATGTCAACAATACACGTGTCGATTTCTTCGAAGCCCTCTTGCAATG
CCAATCTTTAGGAGCTCACTTGACGACCATGCACAGTGCACAAGAGGAAG
CCCAACTTTCGCGCGCCTTTGATTCGTGCGATACACCGTGGATCGGATTG
GAAAATACCGACCCGAATCGAGTGAATTCGAACGCCGGTTGGAAATGGAA
CGACAACACAGTTCTTAGATATTCGAACTGGCAGAGCACCACACCGACCA
ATGATAAAACGAAGCAATGTGGAAAGCTAGTTCGTGGATTGTCATGGGTC
AACACACATTGTTGGGAATTGCTACCCTTCATCTGCCAGAAGAATATTTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021506XLOC_021506Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036482-exon-sc0001472-1491911889:8615..8930TCONS_00036482-exon-sc0001472-1491911889:8615..8930Clytia hemisphaericaexon
TCONS_00036482-exon-sc0001472-1510915933:8615..8930TCONS_00036482-exon-sc0001472-1510915933:8615..8930Clytia hemisphaericaexon
TCONS_00036482-exon-sc0001472-1575043694:8615..8930TCONS_00036482-exon-sc0001472-1575043694:8615..8930Clytia hemisphaericaexon
TCONS_00036482-exon-sc0001472-1491911889:9488..9678TCONS_00036482-exon-sc0001472-1491911889:9488..9678Clytia hemisphaericaexon
TCONS_00036482-exon-sc0001472-1510915933:9488..9678TCONS_00036482-exon-sc0001472-1510915933:9488..9678Clytia hemisphaericaexon
TCONS_00036482-exon-sc0001472-1575043694:9488..9678TCONS_00036482-exon-sc0001472-1575043694:9488..9678Clytia hemisphaericaexon
TCONS_00036482-exon-sc0001472-1491911889:10064..10959TCONS_00036482-exon-sc0001472-1491911889:10064..10959Clytia hemisphaericaexon
TCONS_00036482-exon-sc0001472-1510915933:10064..10959TCONS_00036482-exon-sc0001472-1510915933:10064..10959Clytia hemisphaericaexon
TCONS_00036482-exon-sc0001472-1575043694:10064..10959TCONS_00036482-exon-sc0001472-1575043694:10064..10959Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036482-proteinTCONS_00036482-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001472supercontigsc0001472:8615..10959 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0289752	0	0.0658288	0.0580847	0.221648	0.534817	0.929851	0.200311	0.138835	0.560612	0.0690868	17.7188	17.3926	103.718	196.547	17.4715	15.0448	69.332	65.7598	3.34073	3.53542	112.331	94.5064	60.8815	78.5521	3.80963	4.77387	381.546	475.095
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Blast
[Close]
BLAST of TCONS_00036482 vs. Swiss-Prot (Human)
Match: LY75 (Lymphocyte antigen 75 OS=Homo sapiens GN=LY75 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.534e-17
Identity = 78/297 (26.26%), Postives = 130/297 (43.77%), Query Frame = 1 
Query:  313 QGACEDEWVFRQGFCYWSSSFNRGAYRINSWFGAERECRRKRADLVSIHSESENNFVHKMTHCART-WTGLTVTDNGKRTRPEGNEWIDGTSRTYLNWYPG*PGGDSYARHNCYYQHDSTGGKWSHAMCTAQRMFYVCKKPAEMANIRAAVFSHRMRAKRAADKCGKGWKLSGNDKCLHVNNTRVDFFEALLQCQSLGAHLTTMHS-AQEEAQLSRAF--DSCDTPWIGLENTDPNRVNSNAGWKWNDNTVLRYSNWQSTTPT--NDKTKQCGKLVRGL-SWVNTHCWELLPFICQK 1182
            +  CED W   + F    S +        SW  A   C+ + ADL+SI+S +E  ++ +    A+  W GL    + +     G EW D     +LNW P  P   +    +C  + D+  G W    C AQ + YVC+KP         V+++      +  +C  GW L  N  C  + N    + +A  +C++  + L ++HS A  E  +++    D  +  WIGL+N     +N    ++W+D T +  + W    P    +KT  C   +  L  W    C E L ++C++
Sbjct:  213 ENGCEDNWEKNEQF---GSCYQFNTQTALSWKEAYVSCQNQGADLLSINSAAELTYLKEKEGIAKIFWIGLNQLYSAR-----GWEWSDHKPLNFLNWDPDRPSAPTIGGSSC-ARMDAESGLWQSFSCEAQ-LPYVCRKPLNNTVELTDVWTY------SDTRCDAGW-LPNNGFCYLLVNESNSWDKAHAKCKAFSSDLISIHSLADVEVVVTKLHNEDIKEEVWIGLKN-----INIPTLFQWSDGTEVTLTYWDENEPNVPYNKTPNCVSYLGELGQWKVQSCEEKLKYVCKR 487
The following BLAST results are available for this feature:
BLAST of TCONS_00036482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LY753.534e-1726.26Lymphocyte antigen 75 OS=Homo sapiens GN=LY75 PE=1... [more]
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