TCONS_00036481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036481
Unique NameTCONS_00036481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036481 ID=TCONS_00036481|Name=TCONS_00036481|organism=Clytia hemisphaerica|type=transcript|length=333bp
CGATTTTTCTAAATAGATTTTTTTGTTGACTTGGAGTGTGGGGAATCAaa
gtttcataaatttttgatgCCATAACATCCAACATGCCAGGCGAAGAAAA
CATGTATTAAGGAACATTTAAATAAACAggATTATTCGAACTAGCAAAGG
AGACAGTCGTAAAGATTTCCTACTGTAATTTTACATTAATGCTGAATAAA
GACTTTTGGGAAATCAATTTTTGTGCAAAGCAGCAAAGTTGTTTTCAAAT
GACCGTTGAATATGAAAGATTGGAGGAAATCAACAGCAGTGGATAAATCA
CTAATGATAACGACTAAAAGGACATTGCGGAGA
Run BLAST on NCBI

transcript from alignment at sc0001468:24357..25709-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036481 ID=TCONS_00036481|Name=TCONS_00036481|organism=Clytia hemisphaerica|type=transcript|length=1353bp|location=Sequence derived from alignment at sc0001468:24357..25709- (Clytia hemisphaerica)
CGATTTTTCTAAATAGATTTTTTTGTTGACTTGGAGTGTGGGGAATCAAA
GTTTCATAAATTTTTGATGCCATAACATCCAACATGCCAGGCGAAGAAAA
CATGTATTAAGGAACATTTAAATAAACAGTAAGTGAAACTTCTATAGTAA
TCTTTAAAAAGTCTTGAAAAATTTGCATTCTTTCTAGCTAAAATTAAATC
AATCTTTAAGTTACAACAGACAGGGATTTAAAAATTCGCTCTTAGAGCAT
TTTACAGAATATTATTACAGTTTGGAGCGTTGTTTTTTAGTTTGGTATAT
TCATTTTATGCCAACATTTTCATGCTGATTTCTTAGCCATTTCTGAAATC
TGAGGCCGAGTTTGTTTTTTAATTATTTCTAAAGTTTTGGCTCAAATCAA
ACCTCACGCTCAAATAAAACTGCTCGGTTGAAGAGATTTTATTTCAAATT
TTGATATATCCTTTTTTTGTCTTTCAATAAGTTTAATTTCTAAGTTACTT
AAATGTCTTGAAAATAGAAGATTTATTGATTAGGTGAGCTTTCAACTTGT
ATTCATATTTTTCTTCTTTAGGGATTATTCGAACTAGCAAAGGAGACAGT
CGTAAAGATTTCCTACTGTAATTTTACATTAATGCTGAATAAAGACTTTT
GGGAAATCAATTTTTGTGCAAAGCAGCAAAGTTGTTTTCAAATGACCGTT
GAATATGAAAGGTACGCACTATGATTTTATTATTCCTATTTCACCTTTAT
TACATTTGCTGCATAAGGGACCGGTGTAGGACATTGCTAACCATTCAAAT
TTGAAAATAATACACCCCTGTCTCACAGCCCCGTTGGAACTTCTTTCCTC
AGTGGGAATAAAATTTCCTGTCGAAATTCACGTGGGAATAAAAATTATTT
TGTTTCAAGTTCTAAGGTTAAAAACTCCATTCGGGGTGGTTTTGGAGTGC
GGTTTTTAAACATTGATTTTCGGATGGGGATGAAATCATAGTCAATTTCT
CAGTGGGGCTGAAATTCCCGGTAATTTTTTACCGGGGACGAAACTTTTGC
CAGATATTCCAGTGGAATTGGGATTCCAGCGGGTCTGTGACACAGGGGTT
TAATAATTAATGAATATAATTAAACCTTGTAAATTTTGAATTTATTCTAA
TAATATTGCTAGTAATCTTTATTGTGATAGGATTGCACAACATAAAGCAT
TTTCTGTAAAGGCAACTTTAAAGTGGTAACTTTGAATAATTTTAATAAAT
ATTTTTCAACATTTTTTCTGTCTAAATCATATCTTTAGATTGGAGGAAAT
CAACAGCAGTGGATAAATCACTAATGATAACGACTAAAAGGACATTGCGG
AGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021505XLOC_021505Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036481-exon-sc0001468-1575043694:25582..25709TCONS_00036481-exon-sc0001468-1575043694:25582..25709Clytia hemisphaericaexon
TCONS_00036481-exon-sc0001468-1575043694:24999..25138TCONS_00036481-exon-sc0001468-1575043694:24999..25138Clytia hemisphaericaexon
TCONS_00036481-exon-sc0001468-1575043694:24357..24421TCONS_00036481-exon-sc0001468-1575043694:24357..24421Clytia hemisphaericaexon
TCONS_00036481-exon-sc0001468-1510915933:25582..25709TCONS_00036481-exon-sc0001468-1510915933:25582..25709Clytia hemisphaericaexon
TCONS_00036481-exon-sc0001468-1510915933:24999..25138TCONS_00036481-exon-sc0001468-1510915933:24999..25138Clytia hemisphaericaexon
TCONS_00036481-exon-sc0001468-1510915933:24357..24421TCONS_00036481-exon-sc0001468-1510915933:24357..24421Clytia hemisphaericaexon
TCONS_00036481-exon-sc0001468-1491911889:25582..25709TCONS_00036481-exon-sc0001468-1491911889:25582..25709Clytia hemisphaericaexon
TCONS_00036481-exon-sc0001468-1491911889:24999..25138TCONS_00036481-exon-sc0001468-1491911889:24999..25138Clytia hemisphaericaexon
TCONS_00036481-exon-sc0001468-1491911889:24357..24421TCONS_00036481-exon-sc0001468-1491911889:24357..24421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001468supercontigsc0001468:24357..25709 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43053	0.610917	0.647886	1.26771	1.15749	0.914661	1.1035	1.03308	0.964381	0.895906	1.44931	0.381089	0	0	0	0	0	0	0	0	0	0	1.05042	1.19295	0	0	0	0	0	0.323538
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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