TCONS_00036480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036480
Unique NameTCONS_00036480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036480 ID=TCONS_00036480|Name=TCONS_00036480|organism=Clytia hemisphaerica|type=transcript|length=673bp
CTAAAGTCCATTCACACTTTTGGTCTCCAACATTCCCACACAAACACAca
accaaacaaagatttactACAAAGACAAAGACCTTACTCTACTACTAAGC
ATCAAACCAATACCACCTATATATCATCCAACGAGACCTAAACATTTATT
TCACTTATTATCATTATCAAAAGCAATGAACTCCATTCAAGAGCTACACA
AAACACGACGGGGTAGCCAGAAGCCCGCCCTCGATCTGGACCATACGCAA
GCATTAAACAAAAATGTGGCGGCAAGTGTTGTCAACCTTACAAGTGCTGT
CAATACCAGCATGCTAAACTTAAATGCTGGTGAAGTTTCTTCCCATTCAT
TGACCAATACCACAAACGTCACAGATAGAGAAAATATCAACCCAGTGAAC
ACGGAAACtgaaGCCATATCGATATCAGTGGCTCAGCCTAATTTCCAGAC
ACATATTAAAGGTGCACTTCTAGCTATGCTAGTGTGTCTGGTTACTTTTG
CGGTAGTGTACCTAATGGAGTATGACTCTATTAATAAAATTATGCGtttt
tacaGAAGTATTGACCCTGACATTAACAACTCTACTCAAGAGCCAGAAGC
TTGGCAAACGTGGATGCAGCAGGTTTACAACTGGGTGATCAACCAAGTGC
ATGAACTCATTAAGGGATTTTGG
Run BLAST on NCBI

protein sequence of TCONS_00036480-protein

>TCONS_00036480-protein ID=TCONS_00036480-protein|Name=TCONS_00036480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MNSIQELHKTRRGSQKPALDLDHTQALNKNVAASVVNLTSAVNTSMLNLN
AGEVSSHSLTNTTNVTDRENINPVNTETEAISISVAQPNFQTHIKGALLA
MLVCLVTFAVVYLMEYDSINKIMRFYRSIDPDINNSTQEPEAWQTWMQQV
YNWVINQVHELIKGFW
Run BLAST on NCBI

transcript from alignment at sc0001468:3822..7994-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036480 ID=TCONS_00036480|Name=TCONS_00036480|organism=Clytia hemisphaerica|type=transcript|length=4173bp|location=Sequence derived from alignment at sc0001468:3822..7994- (Clytia hemisphaerica)
CTAAAGTCCATTCACACTTTTGGTCTCCAACATTCCCACACAAACACACA
ACCAAACAAAGATTTACTACAAAGACAAAGACCTTACTCTACTACTAAGC
ATCAAACCAATACCACCTATATATCATCCAACGAGACCTAAACATTTATT
TCACTTATTATCATTATCAAAAGCAATGAACTCCATTCAAGAGGTAAATA
TTAACCAGATATTCAATAGTTAAGTTGGTTATTAAGACTTCTTAACCCGA
GGTGATGTAATATCCAACGAAGCGAAGCCTAGTTGCATATATACATCACC
GAGGCTTTTCAATGGATGTTTTTGCCTGCAGGTATACAACAATACATCTT
AAACACTAGTCTTACTTTAGTAACGAACCACTAAGAATGAACATTCCATC
CAGCCAGATAGCGTGGAAGAGTTAATGAATGTCAATCCGGGGGGTTCTCA
TATGGTCTGACCCACGGCATGTGCCGCCTTTGATGGTAGGTTTTTTGAGA
CCCTCGAAATGCACCGTAACATTGGGTCCTATGTTAAAAATTGATTTTGC
CTTTTAAAGTCTGGCAACCCTTTTAAAATATGTGTTGGGGGTCTAGGAAA
GTAAATATAACTGAAAAATGAGGTAGGGATTATTTTTCAGGTCCCTACCC
TAAGATTTAGGCCTTACCCAAATTGGGCCAGGACAGAAAATTGGCAATTT
AAAAATTTCAATTAGTAATTTCAAACTTTGTCTATTTTGGACATTTTAGT
ATAAAATTCAATTTCTTGTAGATTACAGTATAGTCATAAGATTTCCAAAT
TCTTTTGAGGTATATGATTTTTAAGAGGACATTATTTAGATCCTTGAAAA
CACTTGCAGCATAATAAGGACTAATGAACTCATTAACCCCTGAAGTTTTA
ACAAGACATGCTTTGAAAATTAGCTTTGGTATGAGAAGAGTAAAGATACC
GGGTGTCCCAGAAAAAAGTCCCCCTCTTTGAAGTGAACTCTTCTCGAGTT
GTGTCAACTGAGAGTCGATCATTTCGCATTGAAAAGAGAAAGGGTTTACC
AGGGGTAACGCATCTTGGGCACTTTCTTTGACATGTAAACTGTGGTCGCA
AAGGCAACAGAGAGTTTATGTATTTGCACTTTTGAGGACGGTAGAGTGAC
TGAAGCGATTTGGAAAAACCCGCAATTCTGACCCGCAAAATCGAGGACGG
TAAAAGTGCTGACGTACCGTCAGCAATAATAAACAGTGACGTTTTTATGA
AAAATATCTACTAAAGAATCTGAGATGTATAGATTATATGATTAATTTCT
ACTCTCTTTCAGCTACACAAAACACGACGGGGTAGCCAGAAGCCCGCCCT
CGATCTGGACCATACGCAAGCATTAAACAAAAATGTGGCGGCAAGTGTTG
TCAACCTTACAAGTGCTGTCAATACCAGCATGCTAAACTTAAATGCTGGT
GAAGTTTCTTCCCATTCATTGACCAATACCACAAACGTCACAGATAGAGA
AAATATCAACCCAGTGAACACGGAAACGTAAAAAATTCTATATGTTTCAT
TTCTGTCTTACAGTTCTGTAGGGTGGTAATTTTCCATACTGCTTGCTTAA
GTGAAGACTCTTAACCATTATATTCTGTCCTCTAAGCTTAGCACTTCCTT
GCAAGGAGAATGGTCAATCAATGAGATCATTGAGAAATTCAGCTTTCNGT
CCATACTGCTTGCTTAGTGAAGACTCTTAACCATTATATTCTGTCCTCTA
AGCTTAGCACTTCCTTGCAAGGAGAATGGTCAATCAATGAGATCATTGAG
AAATTCAGCTTTCCATGTAACTTGGAAAAATCGCAAAAAGCGCTTGATTA
TTAAAGGTTTTATTTTTACATAAGTGTTCCCGTTTCATATCAGACAATAT
TTCATATAAGGACAGTGACTGCCTATTGCTGTATATTATGCTGATATAAG
CAAAAAAATGTTTCTCTTTTCCTCTTCCTGATCAACCTTGTTCCACATCC
GTGTCAATCCAATGTGAAAAAGCTTGTGAATTAATAAAATTGATGAGTAA
GCAAACGATATCACTCTTATTTAAAAACAAAACTTTTAAACATTCAGACG
GTATAAATTAATTTCTAAGAATAGATATTACCTAGAGTTTAAATTTGTTT
TTTTTCTTTTCTTTTTCAGTGAAGCCATATCGATATCAGTGGCTCAGCCT
AATTTCCAGACACATATTAAAGGTGCACTTCTAGCTATGCTAGTGTGTCT
GGTTACTTTTGCGGTAGTGTACCTAATGGAGTATGACTCTATTAATAAAA
TTATGCGGTAAGAGATTTAATAGCTTACTCTAAGGTCCCGAATAAACGTC
CCGACCGGTTTTTATCCGTTATTATTGTTCTTATCGTGTACCTCCTGTTT
AATAAAGTTGTACAGTAAAACCTCTAATTAACGGACACTCTAAAATGCGG
ACACTTCTAATTAGCGGACACTAACCCACATTCCACTGTATTCCAAAAAT
CACCATGTTACATTTTTGGAATACAACTTTATTAAATTCGCTCTACGAAT
AATATTGAGCACTCTTTTAATGGTTGTTCAAGAAACACATTAGTACCCCC
TGTTTATTTACATTGTAAAATATTTTCAGCTCGCAAGCTGAATTTGCTCT
AAATAACCTGCTTTTAAAGCTTATAATTATATGACTGATTTTATTTATGT
TGCGTGCCCTTATCCTTCGGCGGGGTATTATTTCGTAATACCCCGCTTGA
TTTGTAATACCCCGCTCCCGCCTAAATATTTTTGATCAAAACCATTTTCT
CCTAACATAATTTCACGCGAAATGAACGTTCGAATTTCCAAAACATTCGA
ATATTTTTGGCATTATTTGATCACAAAAAGTAAACAGTATTCGATACAAA
AATATTTTGAGTATAGCTGTCTGGTCAAAGGAGGAAAAGTACAAGAACAA
AGTACAAAGAAGAATTTGTTGAATTTGTCAAGCTGTTGGATGATGTTGTT
CTTTTATTATGGCAAAATTCTAAAAACAAAAACGCGAACATTTAGATAAA
TGCTTTTCAGAAATGGGCGGAGAGTTTCGTGGACTTGAGGCGATAGAATG
GGAGAGCATATCCGAATACGAACCATATAGCTAATTTTGACACTTCATTT
GTGACCATTTTGTGTGGAGATACGAAAGAAAGAATAATGGCACTGATTAT
AAACTTGGATACTTGCTGATAATAATACAGGCGTCTTTGCAAAGGAGCCG
AAAATACAATTTTTATGAAGAATCCTCGTTCCAATAATATTGTTGTAAAA
TGGATTATTTTTTATTATTGGTTTTGTTGTTTGACATTATATTTATGAAA
TATCTGCAACAATTTGAAAGTGATATGGAATAATTTGTGTTTTGGAGCAG
CAATACATCATCTTTCTATAGTAAAACGTCATAAATTTTCTGTCTCACTT
CTGGAATCCCCAGATCAGCTCTTTAAAAAATAATAAAATCAGTCATATAA
TTAACCAGGAATGATATGGCATTTCGTGAAATTAGGATTAATACCCCTCG
TATCATTTTGAAACAGTTTGAAATAGGCCCCACTTCGTTCGAGCTATTTC
AAACTATTTCAAAATGAAACTCGGGGTATTAATCCCTAATTTCCCTCAAT
GTCATATCATTACTATTACTAATTACCTTATTTTGGTTTTTTTTTTCGGA
CCCCCACCCCCCTTTTATTCACCCAACCGTTTATGAGATTTTGAAAACAT
TTCAGACATCGCCCCTACTATTCTGGACCTTAGAAGTACTTAAATTATCT
ATCGTTGCATTCTTCTAAGAGGGTGATGAAATTTTCTTTCGGCTACCGGT
AATTCTGATTGATAAAAAGTGGCATACTTAAAAGATAGATCTTGAAAAGA
GCTTTCAAACGAACCCAAACATGACCCATTTTGCTTTAGCTCCAGCCCAC
AGCTCTGATGGAGTTAAGTTTCACAGTTTCTTTTTTTAATAGTTTTTACA
GAAGTATTGACCCTGACATTAACAACTCTACTCAAGAGCCAGAAGCTTGG
CAAACGTGGATGCAGCAGGTTNTCAATAGCTCTACTCAAGAGCCAGAAGC
TTGGCAAACGTGGATGCAGCAGGTTTACAACTGGGTGATCAACCAAGTGC
ATGAACTCATTAAGGGATTTTGG

Coding sequence (CDS) from alignment at sc0001468:3822..7994-

>TCONS_00036480 ID=TCONS_00036480|Name=TCONS_00036480|organism=Clytia hemisphaerica|type=CDS|length=2490bp|location=Sequence derived from alignment at sc0001468:3822..7994- (Clytia hemisphaerica)
GTTTACAACTGGGTGATCAACCAAGTGCATGAACTCATTAAGGGATTTTG
GTTTTTACAGAAGTATTGACCCTGACATTAACAACTCTACTCAAGAGCCA
GAAGCTTGGCAAACGTGGATGCAGCAGTGAAGCCATATCGATATCAGTGG
CTCAGCCTAATTTCCAGACACATATTAAAGGTGCACTTCTAGCTATGCTA
GTGTGTCTGGTTACTTTTGCGGTAGTGTACCTAATGGAGTATGACTCTAT
TAATAAAATTATGCGCTACACAAAACACGACGGGGTAGCCAGAAGCCCGC
CCTCGATCTGGACCATACGCAAGCATTAAACAAAAATGTGGCGGCAAGTG
TTGTCAACCTTACAAGTGCTGTCAATACCAGCATGCTAAACTTAAATGCT
GGTGAAGTTTCTTCCCATTCATTGACCAATACCACAAACGTCACAGATAG
AGAAAATATCAACCCAGTGAACACGGAAACATGAACTCCATTCAAGAGGT
TTACAACTGGGTGATCAACCAAGTGCATGAACTCATTAAGGGATTTTGGT
TTTTACAGAAGTATTGACCCTGACATTAACAACTCTACTCAAGAGCCAGA
AGCTTGGCAAACGTGGATGCAGCAGTGAAGCCATATCGATATCAGTGGCT
CAGCCTAATTTCCAGACACATATTAAAGGTGCACTTCTAGCTATGCTAGT
GTGTCTGGTTACTTTTGCGGTAGTGTACCTAATGGAGTATGACTCTATTA
ATAAAATTATGCGCTACACAAAACACGACGGGGTAGCCAGAAGCCCGCCC
TCGATCTGGACCATACGCAAGCATTAAACAAAAATGTGGCGGCAAGTGTT
GTCAACCTTACAAGTGCTGTCAATACCAGCATGCTAAACTTAAATGCTGG
TGAAGTTTCTTCCCATTCATTGACCAATACCACAAACGTCACAGATAGAG
AAAATATCAACCCAGTGAACACGGAAACATGAACTCCATTCAAGAGGTTT
ACAACTGGGTGATCAACCAAGTGCATGAACTCATTAAGGGATTTTGGTTT
TTACAGAAGTATTGACCCTGACATTAACAACTCTACTCAAGAGCCAGAAG
CTTGGCAAACGTGGATGCAGCAGTGAAGCCATATCGATATCAGTGGCTCA
GCCTAATTTCCAGACACATATTAAAGGTGCACTTCTAGCTATGCTAGTGT
GTCTGGTTACTTTTGCGGTAGTGTACCTAATGGAGTATGACTCTATTAAT
AAAATTATGCGCTACACAAAACACGACGGGGTAGCCAGAAGCCCGCCCTC
GATCTGGACCATACGCAAGCATTAAACAAAAATGTGGCGGCAAGTGTTGT
CAACCTTACAAGTGCTGTCAATACCAGCATGCTAAACTTAAATGCTGGTG
AAGTTTCTTCCCATTCATTGACCAATACCACAAACGTCACAGATAGAGAA
AATATCAACCCAGTGAACACGGAAACATGAACTCCATTCAAGAGGTTTAC
AACTGGGTGATCAACCAAGTGCATGAACTCATTAAGGGATTTTGGTTTTT
ACAGAAGTATTGACCCTGACATTAACAACTCTACTCAAGAGCCAGAAGCT
TGGCAAACGTGGATGCAGCAGTGAAGCCATATCGATATCAGTGGCTCAGC
CTAATTTCCAGACACATATTAAAGGTGCACTTCTAGCTATGCTAGTGTGT
CTGGTTACTTTTGCGGTAGTGTACCTAATGGAGTATGACTCTATTAATAA
AATTATGCGCTACACAAAACACGACGGGGTAGCCAGAAGCCCGCCCTCGA
TCTGGACCATACGCAAGCATTAAACAAAAATGTGGCGGCAAGTGTTGTCA
ACCTTACAAGTGCTGTCAATACCAGCATGCTAAACTTAAATGCTGGTGAA
GTTTCTTCCCATTCATTGACCAATACCACAAACGTCACAGATAGAGAAAA
TATCAACCCAGTGAACACGGAAACATGAACTCCATTCAAGAGGTTTACAA
CTGGGTGATCAACCAAGTGCATGAACTCATTAAGGGATTTTGGTTTTTAC
AGAAGTATTGACCCTGACATTAACAACTCTACTCAAGAGCCAGAAGCTTG
GCAAACGTGGATGCAGCAGTGAAGCCATATCGATATCAGTGGCTCAGCCT
AATTTCCAGACACATATTAAAGGTGCACTTCTAGCTATGCTAGTGTGTCT
GGTTACTTTTGCGGTAGTGTACCTAATGGAGTATGACTCTATTAATAAAA
TTATGCGCTACACAAAACACGACGGGGTAGCCAGAAGCCCGCCCTCGATC
TGGACCATACGCAAGCATTAAACAAAAATGTGGCGGCAAGTGTTGTCAAC
CTTACAAGTGCTGTCAATACCAGCATGCTAAACTTAAATGCTGGTGAAGT
TTCTTCCCATTCATTGACCAATACCACAAACGTCACAGATAGAGAAAATA
TCAACCCAGTGAACACGGAAACATGAACTCCATTCAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021504XLOC_021504Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036480-proteinTCONS_00036480-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036480-exon-sc0001468-1575043694:7802..7994TCONS_00036480-exon-sc0001468-1575043694:7802..7994Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1575043694:6468..6682TCONS_00036480-exon-sc0001468-1575043694:6468..6682Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1575043694:5688..5825TCONS_00036480-exon-sc0001468-1575043694:5688..5825Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1575043694:3927..4002TCONS_00036480-exon-sc0001468-1575043694:3927..4002Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1575043694:3822..3872TCONS_00036480-exon-sc0001468-1575043694:3822..3872Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1510915933:7802..7994TCONS_00036480-exon-sc0001468-1510915933:7802..7994Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1510915933:6468..6682TCONS_00036480-exon-sc0001468-1510915933:6468..6682Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1510915933:5688..5825TCONS_00036480-exon-sc0001468-1510915933:5688..5825Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1510915933:3927..4002TCONS_00036480-exon-sc0001468-1510915933:3927..4002Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1510915933:3822..3872TCONS_00036480-exon-sc0001468-1510915933:3822..3872Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1491911889:7802..7994TCONS_00036480-exon-sc0001468-1491911889:7802..7994Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1491911889:6468..6682TCONS_00036480-exon-sc0001468-1491911889:6468..6682Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1491911889:5688..5825TCONS_00036480-exon-sc0001468-1491911889:5688..5825Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1491911889:3927..4002TCONS_00036480-exon-sc0001468-1491911889:3927..4002Clytia hemisphaericaexon
TCONS_00036480-exon-sc0001468-1491911889:3822..3872TCONS_00036480-exon-sc0001468-1491911889:3822..3872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001468supercontigsc0001468:3822..7994 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.182358	0	0	0	0	0.125531	0	0.0509224	0	0.0528099	0.0434169	0.046593	0	0	0	0	0	0	0	0	0.492554	0.732655	0.419371	0.783237	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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