TCONS_00036472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036472
Unique NameTCONS_00036472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036472 ID=TCONS_00036472|Name=TCONS_00036472|organism=Clytia hemisphaerica|type=transcript|length=297bp
ACCGCAATCCGCCTACGTAGCTTTTATCGCTGGCTTCAAGCACAAACTCA
CATACCACATCCGAACAATCCCTGACATGCACCAATACCTTGCACCGTTC
GACCTTATCCTCGACAGGATATGTGGGAAATTGATTCGGCCACAAATAAC
TCACGGACACGGTTGGTTACAAAAACCAATAACAAAATCTCTTTCTCCGG
ATCACCATAAAATGTGCACAATATCAAATAAATCCACTCCGTTCTTCCAC
TATTTAAATTCTATCCACTCTTCTCTGCTGTCTCCCATCACTAACTT
Run BLAST on NCBI

transcript from alignment at sc0001464:33381..33677

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036472 ID=TCONS_00036472|Name=TCONS_00036472|organism=Clytia hemisphaerica|type=transcript|length=297bp|location=Sequence derived from alignment at sc0001464:33381..33677 (Clytia hemisphaerica)
AAGTTAGTGATGGGAGACAGCAGAGAAGAGTGGATAGAATTTAAATAGTG
GAAGAACGGAGTGGATTTATTTGATATTGTGCACATTTTATGGTGATCCG
GAGAAAGAGATTTTGTTATTGGTTTTTGTAACCAACCGTGTCCGTGAGTT
ATTTGTGGCCGAATCAATTTCCCACATATCCTGTCGAGGATAAGGTCGAA
CGGTGCAAGGTATTGGTGCATGTCAGGGATTGTTCGGATGTGGTATGTGA
GTTTGTGCTTGAAGCCAGCGATAAAAGCTACGTAGGCGGATTGCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021496XLOC_021496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036472-exon-sc0001464-1491911889:33381..33677TCONS_00036472-exon-sc0001464-1491911889:33381..33677Clytia hemisphaericaexon
TCONS_00036472-exon-sc0001464-1510915933:33381..33677TCONS_00036472-exon-sc0001464-1510915933:33381..33677Clytia hemisphaericaexon
TCONS_00036472-exon-sc0001464-1575043694:33381..33677TCONS_00036472-exon-sc0001464-1575043694:33381..33677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001464supercontigsc0001464:33381..33677 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69301	3.72133	3.07332	1.49252	6.27096	9.43342	7.87783	6.78031	1.55047	4.46402	1.54424	1.7869	1.15094	1.8838	4.10959	3.64704	2.30419	2.50494	2.67773	3.77625	0.778082	0.885815	4.21068	5.23658	0	0	1.84736	2.35532	3.16661	4.69575
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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