TCONS_00036469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036469
Unique NameTCONS_00036469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4162

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036469 ID=TCONS_00036469|Name=TCONS_00036469|organism=Clytia hemisphaerica|type=transcript|length=4162bp
CTTGAATGACGTCAATTTCTGAAGATCTGCGTTTTAAATAAACCGTCGTG
AAAGTTTTTGCTTGGACATGGCAATTGGTCAGAGTGATTTTGAATCTTTG
TTCGTGTTGGATGGAAGTCATGGATAATGGTTTTGTAACCATCTCCTCAG
GGAGAGGACCACGTCTTTGGCACAAATGGGTCGGTTTATGTCGTCGTATC
AACCATTCTCTAGAGAAAGTCTTTACAAATCTTGGTTACATCATCACAAA
GCGACCGAATTTGACCATCATTCTTGGTGTGCTTATATCCTTAGCATTGA
TAGGTGGATTTGCTCGATACAACCTCATCAAACGAGCTGAAGATCTTTAT
TTACCAAAGAACAGCGAAGCCAGTAAAGATCTTGATCGAGTCGAAGAAAA
CTTTCCAATGAGTTTCAAATCAGAGTCGTTCATCATTCGGCCTAAAGACG
CCAATGCGCCATTATTgacggaagaaattttcaaagaagcGTTAGAGATA
CACCATGAGATCATGAATATTCCAGGTTTAACAGATGTTTGTATAATGAA
CGAACGGTTGAACACGTGTGCTGTTCTATCACCGttagaatttttcaatt
tcaacatcTCAAACATTCAAAACGTATCACAGAGATTACATCAAGTGTTA
AATGATTCTAAAGTTCTATCAAGTGATGGTCGACAAGCGTATACGAACTT
CCCTTACTATTTCTCATATTTCGAAACAACTTTAACAACCCAGGGCATGC
AAATCGTAAGAGCTGACGCTTTGAAGACCGACTATTTTGTAAAAGATCCG
TCGAGTAAAGGTATTTATGGAAAGCTGGAAAGTTTCGAAGATAAATACGT
TGATATCATGTCCAGAAAGGAGAGAGAGCTTGACAACAAAGGTTTAATTC
TTCTATACAATTTTGGACGAAGCATTGACATCTCAGTTAGTGACTCAACA
CAGAAGGACATAATTTTAGTACCTGTGGCTTTACTGCTGATGGTTATATT
CTGCGGGCTGTCATTAGCCCGATTCAGGAACCGAATACTTGGCCATTTCA
ATTTAGCACTTGCTGGTGTTCTAATGTTATTCTTAGCAATCGCTTCTGCG
TTTTGTTTTATCATGCTTATCGGAGCACCGTACATCGCATTCGCTGGAGT
GCTACCTTTCCTTGTTCTCGGGGTTGGTATCGACGATATATTTATTATCA
TCGATTCCGTCGATCGCCAACATCCATCAATCAAATCGAACACCAGAATT
GCCAAAGCTTTGGGTGAAGTTTGCGCCTCTATAACAATGACTACTTTAAC
GGATCTTGTAGCTTTTTTTGTTTCCATGGTGACTGATTTCCCAGCAATCC
GATATTTTTGCATGTATGCAGCATTTAGTATCACTTTCTGCTACATCTTG
GTTATCACCGTGTTTGTGGCTTTGTTGTCATTTGACGTGAAAAGGATTGA
GGCGGGACAGTTCGATGTCATTCCATGTGTTGCCAATAATAAAGAAACGA
CTGAGGAGGTCTGGGAAGAAGCAGGTGAATCCATGATTAACAAGCTGATC
ACGAAATACGCAGAAGTATTGATGCTGAAACCCATCAAAGCCATTGTCAT
CATCATTTCAATTGGGATGACTGCATTCGGAATCTACGGTGCAATCAATG
TTGACCAAAGCTTCAATCAATTAGTGTTGGGTCTTAAAGGATCAGCATAT
GTCAAATACTTCGGTTATTTTGAAACTGGTTTCCCCAGTGGAATCCCAGT
TAATGTAGTTTTAGATGCACCTTTGAACTACACAGATTCATCTTTACAGC
AACAGTATAGCAATTTGAGTCAGATTGCGATTGATAACAATTATATGGAA
TCACAAACGTTTAACTGGATGCGAGATCTCCTCAGTTGGAGTAAAAACGA
AAATATCACAGCTtcaggccgtcatttttatccATCCTTATATCTCTTCT
TGCAAGAGAACCAACATTATTTAGTTGatatcaaatttcataaaaattgg
TTACAAGATATGTTAGAATGGTCAGTCGTACGGCAAAAGTTGGTCACTGT
CGATAATTTCTACCAGAATTTAGAACAGTTTCTAATGGAGACTCCACAGA
TAAGCGCTTATATGAAGTATAATTTCACAACAGACTCGTTTTTATTAAGA
TCCAATACGAAAGAGACTTTCAAAACCTGTGATGGTGAATGCTTTTTAAT
CAAAGCATCAAGGTTCATCATCCTTACCAAAGCTAATCATTTCTCCATCT
ATCGAAGAGACGCTATGTTGTCACTACGTGAAGATTTGAGAACGAAAACA
GATTTACCGGTATACGGTGTTTCATATAATTACATATACGTGGAACAGTT
TGTGGTTATTCTACCAGATACTATACGTAATCTGGCTATTTGTGCATCCG
CCATTTTGTTGATCACACTACCCTATTTAGTAGATCCGAAAGtgaccttt
tttgttttttcgggATTTGTATGTCTTATGTTCGAGCTGTTTGGCGTCAT
GTATTTATGGGACGTTTCACTGAATGCGATTTCTATGATAATAATCGTCA
TGGGGATAGGGTTTTCAGTTGATTATTCTGCTCACATTGCGCATGCGTTT
GTCATTTGTAATGAGAAGACATCGGAGAGACGAGTCATCTATGCTATGAG
AACGATGGGTGCAAGTGTCACAATGGGAGGTATATCAACATTCGTGGGAG
TGGTAACAACAGCTTTTGCACAAAGtgaacttttcaaaatcttcttcAAG
ATGGTTTTTGGGATTGTTGTTCTTGGTTTGATTCATGGCTTGGTCTTCCT
GCCCGTCTTTCTCGCAGttttttgcaACTATAATGTTCCAATGACCGTCG
AagttgatgaagaagaagagaacGGAAATCTTTCGcccaagaaaaacaaa
atgaatgGAGAAGAAGAACTTTTGACTATGGAAGATATTCCTGATACTGA
TAAAATGTTATAGTACACTGTCCATCATAGCATATACGtttgtataagaa
caaactatataagaacataaggcttcgatggtcaaaatgttaagaataag
ttaagatcATATTAAGGTCTTGTgtactctaaaacacccaatttcttagg
aaaaaatgaacaaaaatactccaaaaatgtcatttaagaacgtttttagg
cctaaaactcaaaaagttaagaacatcccaaggcttgaaaaattttgtgt
atACTATTTCCTTAATTTTTCTGAGGAAGAAGACTtgactGgttaaaaaa
tcacatttagCATTTTGTTTATGGTCTCGTTTTCATGGATTCATAAACAT
CAAGGTTTGGATAGATTCTATAATTCTTTTATTGtacatattttgaattt
tcaaatcaaattgaGATTCTTGTTTTGTAATTATCTTAAGAAAATATAGC
CTTGGaggaagatttttttgaaaatgcatAGGCTGCTTTTGAGTACATTT
AAATTTTGGGCCATCttcggaggtcctataaattaacccacaATCATGGC
CAAAATTAATGTAATTCGTCACTTTTTTGGTACGAATTCAGTCATtttat
tttcctattttcttaTTGCATTAATCTTCAGGTAGCTCCATTCCGTATGT
AGCTTACTGTTtttactaccttaagggaactaattttggcgggaactaat
tttgacgggaagcaaatatcctaaaaaaatttaattttggcgggaactta
ttttggtgaatagtgaatttttttaatttaggcgGGAACTgtttttggcg
aatgacagcataaatctgttctattttgccttatttgagcaattttgatg
aatttcaggggttatttaggcaaggaaacaaaaaatttacttttggcgga
aacttattttggcgagtgagcaaaatatttaattttggctagaactaatt
ttggcaaatttcgtctaaattcgccaaatccgccaaaattagttcctgcc
aaAATAAGTCNCTGGAAGTTCCATCCCGTAGATGTTATTTGGTAGACATG
TGCTTTCACCATTTTTGGGGATAGTTCTGCAAGGGTTATCAGCGGTGCCA
ATCAATCTCCTTGGCAACGAATCGACCAGCGTTGCCATTATCACCATGGT
TACCAAGAGGGTGAGAATATTCTTTTGTGTTGAGCTTCTTGAATTCGTGC
TCTTCATCTTAG
Run BLAST on NCBI

transcript from alignment at sc0001464:17347..31387-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036469 ID=TCONS_00036469|Name=TCONS_00036469|organism=Clytia hemisphaerica|type=transcript|length=14041bp|location=Sequence derived from alignment at sc0001464:17347..31387- (Clytia hemisphaerica)
CTTGAATGACGTCAATTTCTGAAGATCTGCGTTTTAAATAAACCGTCGTG AAAGTTTTTGCTTGGACATGGCAATTGGTCAGAGTGATTTTGAATCTTTG TTCGTGTTGGATGGAAGTCATGGATAATGGTTTTGTAACCATCTCCTCAG GGTAATATTATTAACATTTCAATTTTTTGCAGTCATGATTATATCAGCTT TTGCATCAATATCATTACAGATTTCACAAGGGCGCTCCTACGCTTGCGTT TTCGATAACGTCGTCGAATAGCAATTTCTTTGCATTTTCGGTACCAGTCT TCTGGTGACCGTGCCGATAAGGGATTATAGCAGGTGAGATGGAGTTTTTA TAAGATTTTTTATAAGACTTTAATAATTATTTGGACGCAGTCTCATCCAA TATGAAAAATATTGGGCTATGAGAAGAGATATTGGACTCGGCGAAGCCTC GTCCAATATCTTTTCTCGCACGCCCAATATTTTTGCATATTGGATTCGAC TTTGTCCAATAACTGCTTAATAGTAAAAACTTAAATTTAAAATTTCCATC AGATTCTTGAGTTAACCTTACGCATATTTTACAGACCGGCCTGCAAAGTA CCAACTTCAGGGACCAACTTCTTTCTATTACTGATCTCTTTTACTTGGTA AATCAGGTTTCAGGAACGCGTTTTGATTCATCCAGTAGGCGTGGTCAGTC GGGAACACTATATGAAAAAGGCAACTATTGCCTTAACGGGAAATATTTCC CGAACAGGAAGGTGGAAAAAATGGCTAAGACTTTCCAAATTGGGAAGTGC ACCAGTTTCCCGATCGGGAAAGTGGCCTCTGAGCACTCTGGAAATGCCTG TTGAAAGTTAAAAACCTGTCTCTCTTGTAAAGGAGCGAAAATAAATAATA TTTACCAGGTAGTTAAAAAATCCACCGGTAATTGCTTCTTATTCTACTTT CCCTATTCCCAATTAAAAACTTCCCTATTTGGAAACTTTTTTTTGATAGG GAAACAAAAATCTGCTTTGTTTACAAAAATTATATTTCCCGTTCGGGAAC GACGAAAAGTTCTTGACCAAAACGGGAAACAGAAAAGTGAAGAAATTTTC AATCTGGAAATAGTTTCCTTCTCGAGTTATTTATTTAGTTATACTTCCCG TTAAGGCAATAGTTGCCTTTTTTCATGTAGGGGTACCGACTGGTAGGGGG GGACTATCTTGATAACAATTGGATGAGCCGTTGTACGAAAAGTGGTACTG GGAGTGTGGTATTAGATAAGATTACTTGCTCTTTAATGAAGTTCGTTTTC TGTCCACCTAACTTATACCGTGAGTATCCACGTATGTAGGATTTCCTTTA AAAACAACCAGTGACTGTAAATACTCGGCAAGCCTTGTCACCAATACGAT CTTTACTGACCCTGTATATCCCGTATCCCACCTCGAGAAGACCGTGTAAC CGTTATTTTCCGCTTGGGCAATAACAACAATCTAACAGTTCAACAGATTT TGAAAGTCTTTAGTAAAACTTTACATGGCAAACAGTATTGATAAAAATGG TTCAGAGATATGGAATTAGGGGGACACCAATATATTTCAAACCCGATATT TGATCAAACATGATATAAAGCAATGAATTCATTTGCCAATATGTTCAGTT CAATGACGGTATAATTTATTTTATCGATTTTTGTCACAACCTCTATAATA TCAAATGAGTAAACATTCTAATTCAATTATGTTCTATGATGAAACCATGG ATAGTAACCGAAGATTAAGCTATCAAATGCAGAGACACTCGTTTAAAGAC ACAATCTGAAAACAGTAGTATGTGCAGTGTAATAGAGGTGTCACTGAAAA TACCATTAAGTATAATTCACTTTCTGCTCTATCTTTTCTAATAGTTAGAG TAGGTGGAAAGTGAACAAAAAGTTAGCAGTTGCAATCTTTGTTTTGAAAA AGATTGAAAACAGTCAATGCGAGCGATGCCTGATTATTCACTTTTTTTGG CGTCAATAACCAGTTTTAGCGATTTTTGTGATCGTGATGAGAGTAATAAA TTTCATCGTCGGGACCGGATGAGGGCATGAGAGAGATATATAGTTTTCCC CTGTAGTGAGAAGCTTGTTAATAAACATTTTTAAGAACAAGGAAAGGGGA AAGCATGATTCTTTGTCAGTATTTTTGAGCAATTTTAATTTTCGTACGTC ATTTATCTATGAGTATTTCTGCCTTTGGTGAGAATTGTGTCTTCAGCAAA GTGTGTATTTGGCTACCATTTCTTCGAACACAAAAGTGAAAGAAGGAAGT CTATAGTATTGTCATCCTTCTACTTTAATCCTAATAATACATTTCAATTC AAAAACTAGGTAGTCGGTGAAATTAGATGCGAGTGGATTTGTCTGTTTTC TATTAAACGTGACTAAATATAAGTCTTCCTTCAGTTGTACCGTACATTCA TCTTAGTTGTAGAAGGTCATTGGTTTAATGACTGGATTACCACGGATTAT TTTACGTTCGTTTTTTGTCATATAAATGGATTAGGATGGTCTAACATCTG CGAAGACTTTTTGAGGAACCTTTCTTATTCAAGTCACGTATAAGGAAAGC TTTCGAATCGAATCTCAAAAGGATGGTTCATTTAGCGCTGTCGACCTTTT AACCAAAATAGACTCTTTTTTTATTATTTTTAGCCCATACTTTCAGTCTG GTCCCTTCGGGTGTTTTTGCACTTTTTAAAGGTAAATGAAAGATATAAGG GTTGAGAACCAGTGTCGAAAAGCAGGTGAATCTTTCTAGGCGCTATCAAT TCTTAATCATTTTCAGTGTTCTTTTTTTTTCTCAAACAATCAGTGAAATT TCATATGTTCTCTTCTTCATTCACGATTCTGCTTCTATATGAAAGATGGT TTGAGATATACATTTTTAATATTTTATTTTTCGCTCTTCTTCTCTTCTCT CACGTTTCTCTTATATTTTGAAGAAGAAATATTATAGTATTGGATTTAGA AAATTTTTCATGCGAACAAAAAATCTTAAAATTTGAAAAATAAAACAATA TTGGAGAAATTGATGTTTAAATGGCAGAGCAGGAAAATACAGACGGTTTG CTTGATCAAACGAAACTGGGAAGAAACGAGCTAAAATTGAAACGGTAATA TCTGATTGGTTGATGGTTTCTTAAAGAATTATAAATACTCTGTGGTTTAA TTATTGTAACAGCTTAATTGAGATACATAGTTTTTAGAAATTACTGACTG TCCACTCTTGTATATAGACATTCTTCACATTGCAGATGTGTGTTCTTCGT AATGCAAAAGCCCGGTTGAGGGGGTACTAGGTTTGCGAGATGACGCGTAT GTCAAAGCCTAAGTTTGAAAACCTTTGAAAGACTGAATTTCGAAAATTTT GCTCCTTTTTTGACGTGTTTGCGACCTTTGGCAACATTTGTTTTCCTCCT TTGAAAATAATGTTTTTATAATCAACACACCCCTGTTTCACAGAACCGGT CACATTTTTTTACAATAAATAGATACTTCTTACCCACTCCTTCTTGATTA AGCCTTCTATATGGCATGGTTAATTCTCACTTTGTTGATCAAAGACTATT TACTGGGGAATCGAAAATAACCTCAAAGGTGGCTGATGAAAAATCCTCAA ATTACCAAAACAATCAACAAATCTGAATAAAAAAACATCAAATAAAAATC TTAATTCTGGTAAAGCCCCTGTATGATCCTTGGTACAGCTGATAAATGCT TACCACGTTCAGTGGCACATCAACGTACCCTGTTTAAGGGGCGTTTACCC CATTATAGGATAAAAGGAACCCTGTGTGTGGTGTGTGTTTCATTAGGTAA GAATCTTGTGAANAATGAGTAAACATTCTAATTCAATTATGTTCTATGAT GAAACCATGGATAGTAAGCGAAGATTAAGCTATCAAATGCAGAGACACTC GTTTAAAGACACAATCTGAAAACAGTAGTATGTGCAGTGTAATAGAGGTG TCACTGAAAATACCATTAAGTATAATTCACTTTCTGCTCTGTCTTTTCTA ATAGTTAGAGTAGGTGGAAAGTGAACAAAAAGTTAGCAGTTGCAATCTTT GTTTTGAAAAAGATTGAAAACAGTCAATGCGAGCGATGCCTGATTATTCA CTTTTTTTGGCGTCAATAACCAGTTTTAGCGATTTTTGTGATCGTGATGA GAGTAATAAATTTCATCGTCGGGACCGGATGAGGGCATGAGAGAGATATA TAGTTTTCCCCTGTAGTGAGAAGCTTGTTAATAAACATTTTTAAGAACAA GGAAAGGGGAAAGCATGATTCTTTGTCAGTATTTTTGAGCAATTTTAATT TTCGTACGTCATTTATCTATGAGTATTTCTGCCTTTGGTGAGAATTGTGT CTTCAGCAAAGTGTGTATTTGGCTACCATTTCTTCGAACACAAAAGTGAA AGAAGGAAGTCTATAGTATTGTCATCCTTCTACTTTAATCCTAATAATAC ATTTCAATTCAAAAACTAGGTAGTCGGTGAAATTAGATGCGAGTGGATTT GTCTGTTTTCTATTAAACGTGACTAAATATAAGTCTTCCTTCAGTTGTAC CGTACATTCATCTTAGTTGTAGAAGGTCATTGGTTTAATGACTGGATTAC CACGGATTATTTTACGTTCGTTTTTTGTCATATAAATGGATTAGGATGGT CTAACATCTGCGAAGACTTTTTGAGGAACCTTTCTTATTCAAGTCACGTA TAAGGAAAGCTTTCGAATCGAATCTCAAAAGGATGGTTCATTTAGCGCTG TCGACCTTTTAACCAAAATAGACTCTTTTTTTATTATTTTTAGCCCATAC TTTCAGTCTGGTCCCTTCGGGTGTTTTTGCACTTTTTAAAGGTAAATGAA AGATATAAGGGTTGAGAACCAGTGTCGAAAAGCAGGTGAATCTTTCTAGG CGCTATCAATTCTTAATCATTTTCAGTGTTCTTTTTTTTTCTCAAACAAT CAGTGAAATTTCATATGTTCTCTTCTTCATTCACGATTCTGCTTCTATAT GAAAGATGGTTTGAGATATACATTTTTAATATTTTATTTTTCGCTCTTCT TCTCTTCTCTCACGTTCCTCTTATATTTTGAAGAAGAAATATTATAGTAT TGGATTTAGAAAATTTTTCATGCGAACAAAAAATCTTAAAATTTGAAAAA TAAAACAATATTGGAGAAATTGATGTTTAAATGGCAGAGCAGGAAAATAC AGACGGTTTGCTTGATCAAACGAAACTGGGAAGAAACGAGCTAAAATTGA AACGGTAATATCTGATTGGCTGATGGTTTCTTAAAGAATTATAAATACTC TGTGGTTTAATTATTGTAACAGCTTAATTGAGATACATAGTTTTTAGAAA TTACTGACTGTCCACTCTTGTATATAGACATTCTTCACATTGCAGATGTG TGTTCTTCGTAATGCAAAAGCCCGGTTGAGGGGGTACTAGGTTTGCGAGA TGACGCGTATGTCAAAGCCTAAGTTTGAAAACCTTTGAAAGACTGAATTT CGAAAATTTTGCTCCTTTTTTGACGTGTTTGCGACCTTTGGCAACATTTG TTTTCCTCCTTTGAAAATAATGTTTTTATAATCAACACACCCCTGTTTCA CTGAACCGGTCAGCTTTTTTTACAATAAATAGATACTTCTTACCCAAATG GTCGTAAATTGAAGCCACTCCTTCTTGATTAATNATGTGTGTTCTTCGTA ATGCAAAAGCCCGGTTGAGGGGGTACTAGGTTTGCGAGATGACGCGTATG TCAAAGCCTAAGTTTGAAAACCTTTGAAAGACTGAATTTCGAAAATTTTG CTCCTTTTTTGACGTGTTTGCGACCTTTGGCAACATTTGTTTTCCTCCTT TGAAAATAATGTTTTTATAATCAACACACCCCTGTTTCACAGAACCGGTC ACATTTTTTTACAATAAATAGATACTTCTTACCCACTCCTTCTTGATTAA GCCTTCTATATGGCATGGTTAATTCTCACTTTGTTGATCAAAGACTATTT ACTGGGGAATCGAAAATAACCTCAAAGGTGGCTGATGAAAAATCCTCAAA TTACCAAAACAATCAACAAATCTGAATAAAAAAACATCAAATAAAAATCT TAATTCTGGTAAAGCCCCTGTATGATCCTTGGTACAGCTGATAAATGCTT ACCACGTTCAGTGGCACATCAACGTACCCTGTTTAAGGGGCGTTTACCCC ATTATAGGATAAAAGGAACCCTGTGTGTGGTGTGTGTTTCATTAGGTAAG AATCTTGTGAATGTTTCAAGGAATAATTGCTTCATCCTTTGAATTATTAT CATCAATTACTAATCTAAACATTAGTTTCGTGTATGACAATCAGTGTTGA TTAATTCAAATTATTCAGAGGTAAAAAGGATGTATTTCTCTGGAAACTCA TCATTTTTTCGCTCAACAGTTTATATGTATTGGTGAAGGTCTGAACTGAA ATATCGGTTATTCGTTGTATGCTTGTATCATTTACCAATGTGAGTAGCTC AATTTTTGCGAGACATGCTTGGCAGTACTCTAGAAGTAGGAAGCCCAGCT GGCAAACGTCGTTTTAGCGTTACATGAAAGTTAAGGACGTCAGATTGACG TTGATATAACTTTCTGTACCATCTTGAGCACAATTTTATTCGAGTTGAGG AAATTTCAAAAGTTGAAGTATTATTAACGGAAGGGACTAGAAAACATTGT TTGAGTTAAGGAGACATTCGAGTTCTAGATGTTCGAGTTAAAGAGATTCC GCTGTATATCTACAATCACCCCTGTGGTAGTCGGCAGTAGAAAGTATTTT CCTAGACTCTTCATGTGTTTTTTATCACTTAAAACCTACACGTTTTTTTT ATAAGGAACACATGGGCAAGCGAAATCGTCGGCCTTTTCAATACACGTCA GATCTGAATCTGACGGTATTCCAAAAAACATTAGACGTATTATAGAGTAG TATGGTTGTAACATGATATATAATATACTATTTAAAAAAATATTTCGCCT GCCTATACATTGCGAGCTTGCCACACGTTTATAAGGAGCTCGTCGAGGCT GAAAATGGTCCAAAAAATAAGGAATGGTTAAGGAACTGGTCAGGCTGAGA ATAAGAAACTAAGTTTTAAGGAATCCAATTTTTGCGAATCCAAACTTAGT AGCTATGTAAAAAAGGAACTTGATAAGGAACTTTGATGTTGAAATTCTCT GTAAAAATAAGGAACTCCAGGCTCAGAGCAAAGTTAAGGTTCCTTATAAA AAAAAACGTGTACCAAAACTTCAGAGTGTGGTTTCAGTTCTCTGGGGCTC CGCATCTATTAAGGTCGGAGGCTTGAGGCTAAAAGGAGGTATAAGAACAT TCAAAATTTTTGAAGTCTTTGGATGTTCTTAGCTTTTTGAGTTTTAAGCC TAAAAATATTTTTAACATGTTCTTATTTTCACCATTTCGTGAGTATTTTT TGTCCATTTTCCTAAGAAACCGGGTGTTTTAGAGTTCGCAAATCCTGGCT ATTTATCGAAGCCTTTTGTTCTTATATAGTTTGTTCATGTTTGTTCTTAT AATATGACTGCACTGATTTTAGCTTATGATATGAAAGACAACCAAAGAAA TTATAGAAGCAATGCTAGAAAAAAATGCGGGGAGACTAATCCTAGCTTAC TCTCGGCAACGTCATAACTGTGTTTTTCATTCAATAACCTTTTTATAATG TTGTTATAACGGTCGCCACCACCCACCACACCAAAAGAATCACTTTTTCA GGTTTATTGGTTTTTATCTCAAAGCGCAATCTCTCCTGTAATGAAGCTGA AAACAAGATGCCTGCCAAGTTTCTTTATCTGTTATAATTTTCTTGTCTGC TTTTTACGTAAAAATTAAATAGGCTTTCTTAGAAAAGCTTTATATATTTT TTAAAGTTAAGTCGATTTGTATGATAATTTTCTCTTTTTGTAGCAGACTG CTCTTCTTTAAAAGTTTTGGTTGGTGTTCATTCACTTCATATGTTTTATA GATGGTAGAATGACATTCATTTATCATGTATTTTAGGAGAGGACCACGTC TTTGGCACAAATGGGTCGGTTTATGTCGTCGTATCAACCATTCTCTAGAG AAAGTCTTTACAAATCTTGGTTACATCATCACAAAGCGACCGAATTTGAC CATCATTCTTGGTGTGCTTATATCCTTAGCATTGATAGGTAAGATGTTTC AAATATTTTTAAACCCCTGTCACACTGTCCATTTACTCACAACATGCGTG AATTCGAAAACGCCGGATACTTTGAATTAATAAGTTGTGGACTGTTGTCT TTTTAATCTTGAAATTCATCCTCTTTATGTTTTGTCAAAAATGAGGCTTT CAATACCGGACCCTTTAAAATACAGAAAGATTTCGTCAAAAGAAGCTCTC CAAAAAGTTCATCGATTCATCTACTAAAAAGACATTGATTTTGTTAAAGT TAACTTCCTCTTTTCCCAACACATAAGGTTTGTTTTGTTTAATCATAGTA CTACTTTTCGACTTGGGAAAAATCTAACTGTATCGTCGATCTTCAGCGAT TCCGCCATTTAAAAGGGTGGAAAGGTATCCCGTTGCTCATTTACAAATAT GCATTTCTTTATCAAACAGGTGGATTTGCTCGATACAACCTCATCAAACG AGCTGAAGATCTTTATTTACCAAAGAACAGCGAAGCCAGTAAAGATCTTG ATCGAGTCGAAGAAAACTTTCCAATGAGTTTCAAATCAGAGTCGTTCATC ATTCGGCCTAAAGACGCCAATGCGCCATTATTGACGGAAGAAATTTTCAA AGAAGCGTTAGAGATACACCATGAGATCATGAATATTCCAGGTTTAACAG ATGTTTGTATAATGAACGAACGGTTGAACACGTGTGCTGTTCTATCACCG TTAGAATTTTTCAATTTCAACATCTCAAACATTCAAAACGTATCACAGAG ATTACATCAAGTGTTAAATGATTCTAAAGTTCTATCAAGTGATGGTCGAC AAGCGTATACGAACTTCCCTTACTATTTCTCATATTTCGAAACAACTTTA ACAACCCAGGGCATGCAAATCGTAAGAGCTGACGCTTTGAAGACCGACTA TTTTGTAAAAGATCCGTCGAGTAAAGGTATTTATGGAAAGCTGGAAAGTT TCGAAGATAAATACGTTGATATCATGTCCAGAAAGGAGAGAGAGCTTGAC AACAAAGGTTTAATTCTTCTATACAATTTTGGACGAAGCATTGACATCTC AGTTAGTGACTCAACACAGAAGGACATAATTTTAGTACCTGTGGCTTTAC TGCTGATGGTTATATTCTGCGGGCTGTCATTAGCCCGATTCAGGAACCGA ATACTTGGCCATTTCAATTTAGCACTTGCTGGTGTTCTAATGTTATTCTT AGCAATCGCTTCTGCGTTTTGTTTTATCATGCTTATCGGAGCACCGTACA TCGCATTCGCTGGAGTGCTACCTTTCCTTGTTCTCGGGGTTGGTATCGAC GATATATTTATTATCATCGATTCCGTCGATCGCCAACATCCATCAATCAA ATCGAACACCAGAATTGCCAAAGCTTTGGGTGAAGTTTGCGCCTCTATAA CAATGACTACTTTAACGGATCTTGTAGCTTTTTTTGTTTCCATGGTGACT GATTTCCCAGCAATCCGATATTTTTGCATGTATGCAGCATTTAGTATCAC TTTCTGCTACATCTTGGTTATCACCGTGTTTGTGGCTTTGTTGTCATTTG ACGTGAAAAGGATTGAGGCGGGACAGTTCGATGTCATTCCATGTGTTGCC AATAATAAAGAAACGACTGAGGAGGTCTGGGAAGAAGCAGGTGAATCCAT GATTAACAAGGTATGGAACTATCTTTTTATATCTGATATTTTTTTTCTTT ATAATATAGGTTACACGGTACACTAACGAACAAATAAGACGAAACACTAC TGACAAAAAATAATGTCTGATATACCACTGTTTCAAAACACCTATGGGTT TTCTCGTATCAGGGCTACAGTTTTCGATTCCGGCAAGTTTTCAGGTCAGA AGCACTCACAGAAAAAATGAAAATATGATGATAAGTTTGACTACATCTTT GGCTGAGCAAATAAAAACTTATGTTCAGATTATCTTTTGTTAATTAAGTT TTTAACCAGAGAAAGATTTCACTTTAGGCAAAAATAAAAAATGTAGTGTT TCCGGAAACCGGTCAGGTGAAAAAATATAATTTTCTGATCCGGTCGCAGA CTTCGTTAGTAGTTGATACATTAGTATTCAGGGCTTGCTTCATACTGTGT GTACATAAAAGTTATCTTTAAAGTTCTATTTCAATGATCTTAATTTATCA AAAATAGCAACAACAAAAAATTTTCCGGCCGGCCGCATGAGTGCTTTTTC CTTCACCCGCATTCCGGAAACACTACATTTTTTTATTTTTTTACATTTTC GCCTTACATGTAGAAATAAACTCAAACGAAAAATCATATAAAAGTGTAAC GCTATTCTACTTTTTCTCAATTCCAGCTGATCACGAAATACGCAGAAGTA TTGATGCTGAAACCCATCAAAGCCATTGTCATCATCATTTCAATTGGGAT GACTGCATTCGGAATCTACGGTGCAATCAATGTTGACCAAAGCTTCAATC AATTAGTGTTGGGTCTTAAAGGATCAGCATATGTCAAATACTTCGGTTAT TTTGAAACTGGTTTCCCCAGTGGAATCCCAGTTAATGTAGTTTTAGATGC ACCTTTGAACTACACAGATTCATCTTTACAGCAACAGTATAGCAATTTGA GTCAGATTGCGATTGATAACAATTATATGGAATCACAAACGTTTAACTGG ATGCGAGATCTCCTCAGTTGGAGTAAAAACGAAAATATCACAGCTTCAGG CCGTCATTTTTATCCATCCTTATATCTCTTCTTGCAAGAGAACCAACATT ATTTAGTTGATATCAAATTTCATAAAAATTGGTTACAAGATATGTTAGAA TGGTCAGTCGTACGGCAAAAGTTGGTCACTGTCGATAATTTCTACCAGAA TTTAGAACAGTTTCTAATGGAGACTCCACAGATAAGCGCTTATATGAAGT ATAATTTCACAACAGACTCGTTTTTATTAAGATCCAATACGAAAGAGACT TTCAAAACCTGTGATGGTGAATGCTTTTTAATCAAAGCATCAAGGTTCAT CATCCTTACCAAAGCTAATCATTTCTCCATCTATCGAAGAGACGCTATGT TGTCACTACGTGAAGATTTGAGAACGAAAACAGATTTACCGGTATACGGT GTTTCATATAATTACATATACGTGGAACAGTTTGTGGTTATTCTACCAGA TACTATACGTAATCTGGCTATTTGTGCATCCGCCATTTTGTTGATCACAC TACCCTATTTAGTAGATCCGAAAGTGACCTTTTTTGTTTTTTCGGGATTT GTATGTCTTATGTTCGAGCTGTTTGGCGTCATGTATTTATGGGACGTTTC ACTGAATGCGATTTCTATGATAATAATCGTCATGGGGATAGGGTTTTCAG TTGATTATTCTGCTCACATTGCGCATGCGTTTGTCATTTGTAATGAGAAG ACATCGGAGAGACGAGTCATCTATGCTATGAGAACGATGGGTGCAAGTGT CACAATGGGAGGTAAGATGAATGAACTAACCCATTTCGGTAGAGTTTTTT CCAGCCAGTGGGGGTAAAAATAATGGACTGAAACTCAGTGATATTGATAG ACTCTCATGCTTTTTTTTATTCAAATTCCATTGTTCTAAAGCCAGTGGGA TGGAAAAAATCACACAATTTTTTTCAGTTAGGAAAGAATTGTTGTATATA ATTCTCCACTGGGGGCGATATTAAGGCGAAGTTGGTGTGTATTACAGCCC TTAAATCTCGTTAAAAAATTCACTCACTTTAGTCTCTGAGGAATTGGTTC CTGAAGGTCTGTATCGCATTCTTTATATGAATCTTAATTAGTTAATCAAC TTGTTTTTTTGAATCTTAGGTATATCAACATTCGTGGGAGTGGTAACAAC AGCTTTTGCACAAAGTGAACTTTTCAAAATCTTCTTCAAGATGGTTTTTG GGATTGTTGTTCTTGGTTTGATTCATGGCTTGGTCTTCCTGCCCGTCTTT CTCGCAGGTATTTTTCTCAATGATCTTTATCTGGTCTTAAAAATCTTTTT TTTGCATTTAATGTACAAGAGTTTGGATCCCGTGTGGATAGACTAAGACT ATGTTTAGATGTTATGGCTCGAAACGAGACTGTCGCAAAACACTTTGTGG GTACCAAAAATTTGAAACAAAGCAAAGTGGATCGAAACAGCTATACTCCA ATATTTTCGTTGAAACGGAACTGCTGCGTTTTCTTGCTCCTAAACGTTCC AAAATCATAATATGAACACTTCCTATCTGAAACAAAATCCATACCGAAGC GATGCTAAACCGGTCACCCGAAAGCCCCTTGCTTAATCTAAGCACTGAAG TGTTGGAATTTTCCTTAAAAAACTTTGACTTGAAAAGAAAATTTCCAAAA AATGCATTCTACTAAGAGCTAATGGTAATTATATTGGAACCCTGAATTTT TTTCTTGAATGACAATATTTACCATTCGTTATCTTTTGTTTTTCAGTTTT TTGCAACTATAATGTTCCAATGACCGTCGAAGTTGATGAAGAAGAAGAGA ACGGAAATCTTTCGCCCAAGAAAAACAAAATGAATGGAGAAGAAGAACTT TTGACTATGGAAGATATTCCTGATACTGATAAAATGTTATAGTACACTGT CCATCATAGCATATACGTTTGTATAAGAACAAACTATATAAGAACATAAG GCTTCGATGGTCAAAATGTTAAGAATAAGTTAAGATCATATTAAGGTCTT GTGTACTCTAAAACACCCAATTTCTTAGGAAAAAATGAACAAAAATACTC CAAAAATGTCATTTAAGAACGTTTTTAGGCCTAAAACTCAAAAAGTTAAG AACATCCCAAGGCTTGAAAAATTTTGTGTATACTATTTCCTTAATTTTTC TGAGGAAGAAGACTTGACTGGTTAAAAAATCACATTTAGCATTTTGTTTA TGGTCTCGTTTTCATGGATTCATAAACATCAAGGTTTGGATAGATTCTAT AATTCTTTTATTGTACATATTTTGAATTTTCAAATCAAATTGAGATTCTT GTTTTGTAATTATCTTAAGAAAATATAGCCTTGGAGGAAGATTTTTTTGA AAATGCATAGGCTGCTTTTGAGTACATTTAAATTTTGGGCCATCTTCGGA GGTCCTATAAATTAACCCACAATCATGGCCAAAATTAATGTAATTCGTCA CTTTTTTGGTACGAATTCAGTCATTTTATTTTCCTATTTTCTTATTGCAT TAATCTTCAGGTAGCTCCATTCCGTATGTAGCTTACTGTTTTTACTACCT TAAGGGAACTAATTTTGGCGGGAACTAATTTTGACGGGAAGCAAATATCC TAAAAAAATTTAATTTTGGCGGGAACTTATTTTGGTGAATAGTGAATTTT TTTAATTTAGGCGGGAACTGTTTTTGGCGAATGACAGCATAAATCTGTTC TATTTTGCCTTATTTGAGCAATTTTGATGAATTTCAGGGGTTATTTAGGC AAGGAAACAAAAAATTTACTTTTGGCGGAAACTTATTTTGGCGAGTGAGC AAAATATTTAATTTTGGCTAGAACTAATTTTGGCAAATTTCGTCTAAATT CGCCAAATCCGCCAAAATTAGTTCCTGCCAAAATAAGTCNCTGGAAGTTC CATCCCGTAGATGTTATTTGGTAGACATGTGCTTTCACCATTTTTGGGGA TAGTTCTGCAAGGGTTATCAGCGGTGCCAATCAATCTCCTTGGCAACGAA TCGACCAGCGTTGCCATTATCACCATGGTTACCAAGAGGGTGAGAATATT CTTTTGTGTTGAGCTTCTTGAATTCGTGCTCTTCATCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021493XLOC_021493Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036469-exon-sc0001464-1575043694:31237..31387TCONS_00036469-exon-sc0001464-1575043694:31237..31387Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1575043694:23150..23301TCONS_00036469-exon-sc0001464-1575043694:23150..23301Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1575043694:21478..22718TCONS_00036469-exon-sc0001464-1575043694:21478..22718Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1575043694:19677..20811TCONS_00036469-exon-sc0001464-1575043694:19677..20811Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1575043694:19181..19318TCONS_00036469-exon-sc0001464-1575043694:19181..19318Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1575043694:17347..18691TCONS_00036469-exon-sc0001464-1575043694:17347..18691Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1510915933:31237..31387TCONS_00036469-exon-sc0001464-1510915933:31237..31387Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1510915933:23150..23301TCONS_00036469-exon-sc0001464-1510915933:23150..23301Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1510915933:21478..22718TCONS_00036469-exon-sc0001464-1510915933:21478..22718Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1510915933:19677..20811TCONS_00036469-exon-sc0001464-1510915933:19677..20811Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1510915933:19181..19318TCONS_00036469-exon-sc0001464-1510915933:19181..19318Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1510915933:17347..18691TCONS_00036469-exon-sc0001464-1510915933:17347..18691Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1491911889:31237..31387TCONS_00036469-exon-sc0001464-1491911889:31237..31387Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1491911889:23150..23301TCONS_00036469-exon-sc0001464-1491911889:23150..23301Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1491911889:21478..22718TCONS_00036469-exon-sc0001464-1491911889:21478..22718Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1491911889:19677..20811TCONS_00036469-exon-sc0001464-1491911889:19677..20811Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1491911889:19181..19318TCONS_00036469-exon-sc0001464-1491911889:19181..19318Clytia hemisphaericaexon
TCONS_00036469-exon-sc0001464-1491911889:17347..18691TCONS_00036469-exon-sc0001464-1491911889:17347..18691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001464supercontigsc0001464:17347..31387 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0637489 0 0 0 0.880461 1.1789 2.71122e-05 4.07298 0 0.539616 0.730035 1.78667e-10 0.167707 0 4.98009e-06 0 0 0 0 0 0 5.14091e-07 0 0 19.6072 5.22989 0 1.8759e-08 0 0
Blast
BLAST of TCONS_00036469 vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.707e-54
Identity = 240/965 (24.87%), Postives = 418/965 (43.32%), Query Frame = 3
Query:  222 FTNLGYIITKRPNLTIILGVLISLALIGGFARYNLIKRAEDLYLPKNSEASKDLDRVEENFPMSFKSESFIIR------------PKDANAPL---LTEEIFKEALEIHHEIMNIPGLTDVCIMNERLNTCAV-LSPLEFFNFNIS--NIQNVSQRLHQVLNDSKVLSSDGRQAYTNFPYYFSYFETTLTTQGMQIVRADALKTDYFVKDPSSKGIYGK-------LESFEDK----------------YVDIMSRKER-------------ELDNKGLILLYNFGRSIDISVSDSTQKDIILVPVALLLMVIFCGLSLARFRN--RIL--GHFNLALAGVLMLFLAIASAFCFIMLIGAPY-IAFAGVLPFLVLGVGXXXXXXXXXSVDRQHPSIKSNT---RIAKALGEVCASITMTTLTDLVAFFVSMVTDFPAIRYFCMYAAFSITFCYILVITVFVALLSFDVKRIEAGQFDVIPCVANNKXXXXXXXXXXXXSMINKLITKYAEVLMLKPXXXXXXXXXXGMTAFGIYGAINVDQSFNQLVLGLKGSAYVKYFGYFETGFPSGIPVNVVLDAPLNYTDXXXXXXXXXXXXIAIDNNYMESQTFNWMRDLLSWSKNENITASGRHFYPSLYLFLQENQHYLVDIKFHKNWLQDMLEWSVVRQKLVTVDNFYQNLEQFL-------------------METPQISAYMKY--NFTTDSFLLRSNT------KETFKTCDGECFLIKASRFIILTKANHFSIYRRDAMLSLREDLRTKTD-LPVYGVSYN-------YIYVEQFVVILPDTIRNLAICASAILLITLPYLVDPKVTFFVFSGFVCL-MFELFGVMYLWDVSLNAISMIIIVMGIGFSVDYSAHIAHAFVICNEKTSERRVIYAMRTMGASVTMG-GISTFVGVVTTAFAQSELFKIF-FKMVFGIVVLGLIHGLVFLPVFLA 2816
            FT  G    + P   I   ++   A   G     +     DL+   +S+A  + +  +++F   F++E  IIR            P  A+ P    L  +I  + L++   I NI    D    NE +    + L+PL  +N N +  ++ N  Q  H VL+  K    D    Y ++  +F Y            VRA A   D  +      G +G        L  ++D+                Y +   + +R                N  L + +   RSI+  ++  +  D+  V ++  +M ++  L+L   ++  R+L     +L +AG+L++  ++A +      IG P  +    V+PFLVL VG+D+IFI++ +  R    ++  T   ++ + LGEV  S+ +++ ++ VAFF+  ++  PA+  F ++A  ++   ++L IT FV+LL  D+KR E  + D+  CV   ++ T     E+   +       Y+ +L+   ++ IVI I +G+ +F I     VD   +Q +     S  V YF        +G PV  VL+   +YT S  Q        +  +N+ +  Q FN        ++ +N T  G  F PS                   +W+ D  +W   +     VDN     +QF                     + PQ   +M++   F +D+   +                 G    + A+ F+        S    DA+   R      T+ + + G +Y        Y++ EQ++ I+ DTI NL +   AI L+T+  L     +  +    + + +  +FGVM+LW +SLNA+S++ +VM  G SV++ +HI  AF +  + +   R   A+  MG+SV  G  ++ F G+V  AFA+S++F+IF F+M   +V+LG  HGL+FLPV L+
Sbjct:  339 FTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYD----NETVTLQDICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKK---GDDFFVYADYHTHFLY-----------CVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQRDE-RLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSVQASES--CLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGG--MGCNNDSLVQQIFNA-------AQLDNYTRIG--FAPS-------------------SWIDDYFDWVKPQSSCCRVDNI---TDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLS 1249          
The following BLAST results are available for this feature:
BLAST of TCONS_00036469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPC14.707e-5424.87Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE... [more]
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