TCONS_00036468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036468
Unique NameTCONS_00036468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4171

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036468 ID=TCONS_00036468|Name=TCONS_00036468|organism=Clytia hemisphaerica|type=transcript|length=4171bp
TAGTATtggatttagaaaatttttcatgcgaacaaaaaatcttaaaattt
gaaaaataaaacaatattgGAGAAATTGATGTTTAAATGGCAGAGCAGGA
AAATACAGACGGTTTGCTTGATCAAACGAAACTGGGAAGAAACGAGCTAA
AATTGAAACGGAGAGGACCACGTCTTTGGCACAAATGGGTCGGTTTATGT
CGTCGTATCAACCATTCTCTAGAGAAAGTCTTTACAAATCTTGGTTACAT
CATCACAAAGCGACCGAATTTGACCATCATTCTTGGTGTGCTTATATCCT
TAGCATTGATAGGTGGATTTGCTCGATACAACCTCATCAAACGAGCTGAA
GATCTTTATTTACCAAAGAACAGCGAAGCCAGTAAAGATCTTGATCGAGT
CGAAGAAAACTTTCCAATGAGTTTCAAATCAGAGTCGTTCATCATTCGGC
CTAAAGACGCCAATGCGCCATTATTgacggaagaaattttcaaagaagcG
TTAGAGATACACCATGAGATCATGAATATTCCAGGTTTAACAGATGTTTG
TATAATGAACGAACGGTTGAACACGTGTGCTGTTCTATCACCGttagaat
ttttcaatttcaacatcTCAAACATTCAAAACGTATCACAGAGATTACAT
CAAGTGTTAAATGATTCTAAAGTTCTATCAAGTGATGGTCGACAAGCGTA
TACGAACTTCCCTTACTATTTCTCATATTTCGAAACAACTTTAACAACCC
AGGGCATGCAAATCGTAAGAGCTGACGCTTTGAAGACCGACTATTTTGTA
AAAGATCCGTCGAGTAAAGGTATTTATGGAAAGCTGGAAAGTTTCGAAGA
TAAATACGTTGATATCATGTCCAGAAAGGAGAGAGAGCTTGACAACAAAG
GTTTAATTCTTCTATACAATTTTGGACGAAGCATTGACATCTCAGTTAGT
GACTCAACACAGAAGGACATAATTTTAGTACCTGTGGCTTTACTGCTGAT
GGTTATATTCTGCGGGCTGTCATTAGCCCGATTCAGGAACCGAATACTTG
GCCATTTCAATTTAGCACTTGCTGGTGTTCTAATGTTATTCTTAGCAATC
GCTTCTGCGTTTTGTTTTATCATGCTTATCGGAGCACCGTACATCGCATT
CGCTGGAGTGCTACCTTTCCTTGTTCTCGGGGTTGGTATCGACGATATAT
TTATTATCATCGATTCCGTCGATCGCCAACATCCATCAATCAAATCGAAC
ACCAGAATTGCCAAAGCTTTGGGTGAAGTTTGCGCCTCTATAACAATGAC
TACTTTAACGGATCTTGTAGCTTTTTTTGTTTCCATGGTGACTGATTTCC
CAGCAATCCGATATTTTTGCATGTATGCAGCATTTAGTATCACTTTCTGC
TACATCTTGGTTATCACCGTGTTTGTGGCTTTGTTGTCATTTGACGTGAA
AAGGATTGAGGCGGGACAGTTCGATGTCATTCCATGTGTTGCCAATAATA
AAGAAACGACTGAGGAGGTCTGGGAAGAAGCAGGTGAATCCATGATTAAC
AAGCTGATCACGAAATACGCAGAAGTATTGATGCTGAAACCCATCAAAGC
CATTGTCATCATCATTTCAATTGGGATGACTGCATTCGGAATCTACGGTG
CAATCAATGTTGACCAAAGCTTCAATCAATTAGTGTTGGGTCTTAAAGGA
TCAGCATATGTCAAATACTTCGGTTATTTTGAAACTGGTTTCCCCAGTGG
AATCCCAGTTAATGTAGTTTTAGATGCACCTTTGAACTACACAGATTCAT
CTTTACAGCAACAGTATAGCAATTTGAGTCAGATTGCGATTGATAACAAT
TATATGGAATCACAAACGTTTAACTGGATGCGAGATCTCCTCAGTTGGAG
TAAAAACGAAAATATCACAGCTtcaggccgtcatttttatccATCCTTAT
ATCTCTTCTTGCAAGAGAACCAACATTATTTAGTTGatatcaaatttcat
aaaaattggTTACAAGATATGTTAGAATGGTCAGTCGTACGGCAAAAGTT
GGTCACTGTCGATAATTTCTACCAGAATTTAGAACAGTTTCTAATGGAGA
CTCCACAGATAAGCGCTTATATGAAGTATAATTTCACAACAGACTCGTTT
TTATTAAGATCCAATACGAAAGAGACTTTCAAAACCTGTGATGGTGAATG
CTTTTTAATCAAAGCATCAAGGTTCATCATCCTTACCAAAGCTAATCATT
TCTCCATCTATCGAAGAGACGCTATGTTGTCACTACGTGAAGATTTGAGA
ACGAAAACAGATTTACCGGTATACGGTGTTTCATATAATTACATATACGT
GGAACAGTTTGTGGTTATTCTACCAGATACTATACGTAATCTGGCTATTT
GTGCATCCGCCATTTTGTTGATCACACTACCCTATTTAGTAGATCCGAAA
GtgaccttttttgttttttcgggATTTGTATGTCTTATGTTCGAGCTGTT
TGGCGTCATGTATTTATGGGACGTTTCACTGAATGCGATTTCTATGATAA
TAATCGTCATGGGGATAGGGTTTTCAGTTGATTATTCTGCTCACATTGCG
CATGCGTTTGTCATTTGTAATGAGAAGACATCGGAGAGACGAGTCATCTA
TGCTATGAGAACGATGGGTGCAAGTGTCACAATGGGAGGTATATCAACAT
TCGTGGGAGTGGTAACAACAGCTTTTGCACAAAGtgaacttttcaaaatc
ttcttcAAGATGGTTTTTGGGATTGTTGTTCTTGGTTTGATTCATGGCTT
GGTCTTCCTGCCCGTCTTTCTCGCAGttttttgcaACTATAATGTTCCAA
TGACCGTCGAagttgatgaagaagaagagaacGGAAATCTTTCGcccaag
aaaaacaaaatgaatgGAGAAGAAGAACTTTTGACTATGGAAGATATTCC
TGATACTGATAAAATGTTATAGTACACTGTCCATCATAGCATATACGttt
gtataagaacaaactatataagaacataaggcttcgatggtcaaaatgtt
aagaataagttaagatcATATTAAGGTCTTGTgtactctaaaacacccaa
tttcttaggaaaaaatgaacaaaaatactccaaaaatgtcatttaagaac
gtttttaggcctaaaactcaaaaagttaagaacatcccaaggcttgaaaa
attttgtgtatACTATTTCCTTAATTTTTCTGAGGAAGAAGACTtgactG
gttaaaaaatcacatttagCATTTTGTTTATGGTCTCGTTTTCATGGATT
CATAAACATCAAGGTTTGGATAGATTCTATAATTCTTTTATTGtacatat
tttgaattttcaaatcaaattgaGATTCTTGTTTTGTAATTATCTTAAGA
AAATATAGCCTTGGaggaagatttttttgaaaatgcatAGGCTGCTTTTG
AGTACATTTAAATTTTGGGCCATCttcggaggtcctataaattaacccac
aATCATGGCCAAAATTAATGTAATTCGTCACTTTTTTGGTACGAATTCAG
TCATtttattttcctattttcttaTTGCATTAATCTTCAGGTAGCTCCAT
TCCGTATGTAGCTTACTGTTtttactaccttaagggaactaattttggcg
ggaactaattttgacgggaagcaaatatcctaaaaaaatttaattttggc
gggaacttattttggtgaatagtgaatttttttaatttaggcgGGAACTg
tttttggcgaatgacagcataaatctgttctattttgccttatttgagca
attttgatgaatttcaggggttatttaggcaaggaaacaaaaaatttact
tttggcggaaacttattttggcgagtgagcaaaatatttaattttggcta
gaactaattttggcaaatttcgtctaaattcgccaaatccgccaaaatta
gttcctgccaaAATAAGTCNCTGGAAGTTCCATCCCGTAGATGTTATTTG
GTAGACATGTGCTTTCACCATTTTTGGGGATAGTTCTGCAAGGGTTATCA
GCGGTGCCAATCAATCTCCTTGGCAACGAATCGACCAGCGTTGCCATTAT
CACCATGGTTACCAAGAGGGTGAGAATATTCTTTTGTGTTGAGCTTCTTG
AATTCGTGCTCTTCATCTTAG
Run BLAST on NCBI

transcript from alignment at sc0001464:17347..28403-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036468 ID=TCONS_00036468|Name=TCONS_00036468|organism=Clytia hemisphaerica|type=transcript|length=11057bp|location=Sequence derived from alignment at sc0001464:17347..28403- (Clytia hemisphaerica)
TAGTATTGGATTTAGAAAATTTTTCATGCGAACAAAAAATCTTAAAATTT
GAAAAATAAAACAATATTGGAGAAATTGATGTTTAAATGGCAGAGCAGGA
AAATACAGACGGTTTGCTTGATCAAACGAAACTGGGAAGAAACGAGCTAA
AATTGAAACGGTAATATCTGATTGGTTGATGGTTTCTTAAAGAATTATAA
ATACTCTGTGGTTTAATTATTGTAACAGCTTAATTGAGATACATAGTTTT
TAGAAATTACTGACTGTCCACTCTTGTATATAGACATTCTTCACATTGCA
GATGTGTGTTCTTCGTAATGCAAAAGCCCGGTTGAGGGGGTACTAGGTTT
GCGAGATGACGCGTATGTCAAAGCCTAAGTTTGAAAACCTTTGAAAGACT
GAATTTCGAAAATTTTGCTCCTTTTTTGACGTGTTTGCGACCTTTGGCAA
CATTTGTTTTCCTCCTTTGAAAATAATGTTTTTATAATCAACACACCCCT
GTTTCACAGAACCGGTCACATTTTTTTACAATAAATAGATACTTCTTACC
CACTCCTTCTTGATTAAGCCTTCTATATGGCATGGTTAATTCTCACTTTG
TTGATCAAAGACTATTTACTGGGGAATCGAAAATAACCTCAAAGGTGGCT
GATGAAAAATCCTCAAATTACCAAAACAATCAACAAATCTGAATAAAAAA
ACATCAAATAAAAATCTTAATTCTGGTAAAGCCCCTGTATGATCCTTGGT
ACAGCTGATAAATGCTTACCACGTTCAGTGGCACATCAACGTACCCTGTT
TAAGGGGCGTTTACCCCATTATAGGATAAAAGGAACCCTGTGTGTGGTGT
GTGTTTCATTAGGTAAGAATCTTGTGAANAATGAGTAAACATTCTAATTC
AATTATGTTCTATGATGAAACCATGGATAGTAAGCGAAGATTAAGCTATC
AAATGCAGAGACACTCGTTTAAAGACACAATCTGAAAACAGTAGTATGTG
CAGTGTAATAGAGGTGTCACTGAAAATACCATTAAGTATAATTCACTTTC
TGCTCTGTCTTTTCTAATAGTTAGAGTAGGTGGAAAGTGAACAAAAAGTT
AGCAGTTGCAATCTTTGTTTTGAAAAAGATTGAAAACAGTCAATGCGAGC
GATGCCTGATTATTCACTTTTTTTGGCGTCAATAACCAGTTTTAGCGATT
TTTGTGATCGTGATGAGAGTAATAAATTTCATCGTCGGGACCGGATGAGG
GCATGAGAGAGATATATAGTTTTCCCCTGTAGTGAGAAGCTTGTTAATAA
ACATTTTTAAGAACAAGGAAAGGGGAAAGCATGATTCTTTGTCAGTATTT
TTGAGCAATTTTAATTTTCGTACGTCATTTATCTATGAGTATTTCTGCCT
TTGGTGAGAATTGTGTCTTCAGCAAAGTGTGTATTTGGCTACCATTTCTT
CGAACACAAAAGTGAAAGAAGGAAGTCTATAGTATTGTCATCCTTCTACT
TTAATCCTAATAATACATTTCAATTCAAAAACTAGGTAGTCGGTGAAATT
AGATGCGAGTGGATTTGTCTGTTTTCTATTAAACGTGACTAAATATAAGT
CTTCCTTCAGTTGTACCGTACATTCATCTTAGTTGTAGAAGGTCATTGGT
TTAATGACTGGATTACCACGGATTATTTTACGTTCGTTTTTTGTCATATA
AATGGATTAGGATGGTCTAACATCTGCGAAGACTTTTTGAGGAACCTTTC
TTATTCAAGTCACGTATAAGGAAAGCTTTCGAATCGAATCTCAAAAGGAT
GGTTCATTTAGCGCTGTCGACCTTTTAACCAAAATAGACTCTTTTTTTAT
TATTTTTAGCCCATACTTTCAGTCTGGTCCCTTCGGGTGTTTTTGCACTT
TTTAAAGGTAAATGAAAGATATAAGGGTTGAGAACCAGTGTCGAAAAGCA
GGTGAATCTTTCTAGGCGCTATCAATTCTTAATCATTTTCAGTGTTCTTT
TTTTTTCTCAAACAATCAGTGAAATTTCATATGTTCTCTTCTTCATTCAC
GATTCTGCTTCTATATGAAAGATGGTTTGAGATATACATTTTTAATATTT
TATTTTTCGCTCTTCTTCTCTTCTCTCACGTTCCTCTTATATTTTGAAGA
AGAAATATTATAGTATTGGATTTAGAAAATTTTTCATGCGAACAAAAAAT
CTTAAAATTTGAAAAATAAAACAATATTGGAGAAATTGATGTTTAAATGG
CAGAGCAGGAAAATACAGACGGTTTGCTTGATCAAACGAAACTGGGAAGA
AACGAGCTAAAATTGAAACGGTAATATCTGATTGGCTGATGGTTTCTTAA
AGAATTATAAATACTCTGTGGTTTAATTATTGTAACAGCTTAATTGAGAT
ACATAGTTTTTAGAAATTACTGACTGTCCACTCTTGTATATAGACATTCT
TCACATTGCAGATGTGTGTTCTTCGTAATGCAAAAGCCCGGTTGAGGGGG
TACTAGGTTTGCGAGATGACGCGTATGTCAAAGCCTAAGTTTGAAAACCT
TTGAAAGACTGAATTTCGAAAATTTTGCTCCTTTTTTGACGTGTTTGCGA
CCTTTGGCAACATTTGTTTTCCTCCTTTGAAAATAATGTTTTTATAATCA
ACACACCCCTGTTTCACTGAACCGGTCAGCTTTTTTTACAATAAATAGAT
ACTTCTTACCCAAATGGTCGTAAATTGAAGCCACTCCTTCTTGATTAATN
ATGTGTGTTCTTCGTAATGCAAAAGCCCGGTTGAGGGGGTACTAGGTTTG
CGAGATGACGCGTATGTCAAAGCCTAAGTTTGAAAACCTTTGAAAGACTG
AATTTCGAAAATTTTGCTCCTTTTTTGACGTGTTTGCGACCTTTGGCAAC
ATTTGTTTTCCTCCTTTGAAAATAATGTTTTTATAATCAACACACCCCTG
TTTCACAGAACCGGTCACATTTTTTTACAATAAATAGATACTTCTTACCC
ACTCCTTCTTGATTAAGCCTTCTATATGGCATGGTTAATTCTCACTTTGT
TGATCAAAGACTATTTACTGGGGAATCGAAAATAACCTCAAAGGTGGCTG
ATGAAAAATCCTCAAATTACCAAAACAATCAACAAATCTGAATAAAAAAA
CATCAAATAAAAATCTTAATTCTGGTAAAGCCCCTGTATGATCCTTGGTA
CAGCTGATAAATGCTTACCACGTTCAGTGGCACATCAACGTACCCTGTTT
AAGGGGCGTTTACCCCATTATAGGATAAAAGGAACCCTGTGTGTGGTGTG
TGTTTCATTAGGTAAGAATCTTGTGAATGTTTCAAGGAATAATTGCTTCA
TCCTTTGAATTATTATCATCAATTACTAATCTAAACATTAGTTTCGTGTA
TGACAATCAGTGTTGATTAATTCAAATTATTCAGAGGTAAAAAGGATGTA
TTTCTCTGGAAACTCATCATTTTTTCGCTCAACAGTTTATATGTATTGGT
GAAGGTCTGAACTGAAATATCGGTTATTCGTTGTATGCTTGTATCATTTA
CCAATGTGAGTAGCTCAATTTTTGCGAGACATGCTTGGCAGTACTCTAGA
AGTAGGAAGCCCAGCTGGCAAACGTCGTTTTAGCGTTACATGAAAGTTAA
GGACGTCAGATTGACGTTGATATAACTTTCTGTACCATCTTGAGCACAAT
TTTATTCGAGTTGAGGAAATTTCAAAAGTTGAAGTATTATTAACGGAAGG
GACTAGAAAACATTGTTTGAGTTAAGGAGACATTCGAGTTCTAGATGTTC
GAGTTAAAGAGATTCCGCTGTATATCTACAATCACCCCTGTGGTAGTCGG
CAGTAGAAAGTATTTTCCTAGACTCTTCATGTGTTTTTTATCACTTAAAA
CCTACACGTTTTTTTTATAAGGAACACATGGGCAAGCGAAATCGTCGGCC
TTTTCAATACACGTCAGATCTGAATCTGACGGTATTCCAAAAAACATTAG
ACGTATTATAGAGTAGTATGGTTGTAACATGATATATAATATACTATTTA
AAAAAATATTTCGCCTGCCTATACATTGCGAGCTTGCCACACGTTTATAA
GGAGCTCGTCGAGGCTGAAAATGGTCCAAAAAATAAGGAATGGTTAAGGA
ACTGGTCAGGCTGAGAATAAGAAACTAAGTTTTAAGGAATCCAATTTTTG
CGAATCCAAACTTAGTAGCTATGTAAAAAAGGAACTTGATAAGGAACTTT
GATGTTGAAATTCTCTGTAAAAATAAGGAACTCCAGGCTCAGAGCAAAGT
TAAGGTTCCTTATAAAAAAAAACGTGTACCAAAACTTCAGAGTGTGGTTT
CAGTTCTCTGGGGCTCCGCATCTATTAAGGTCGGAGGCTTGAGGCTAAAA
GGAGGTATAAGAACATTCAAAATTTTTGAAGTCTTTGGATGTTCTTAGCT
TTTTGAGTTTTAAGCCTAAAAATATTTTTAACATGTTCTTATTTTCACCA
TTTCGTGAGTATTTTTTGTCCATTTTCCTAAGAAACCGGGTGTTTTAGAG
TTCGCAAATCCTGGCTATTTATCGAAGCCTTTTGTTCTTATATAGTTTGT
TCATGTTTGTTCTTATAATATGACTGCACTGATTTTAGCTTATGATATGA
AAGACAACCAAAGAAATTATAGAAGCAATGCTAGAAAAAAATGCGGGGAG
ACTAATCCTAGCTTACTCTCGGCAACGTCATAACTGTGTTTTTCATTCAA
TAACCTTTTTATAATGTTGTTATAACGGTCGCCACCACCCACCACACCAA
AAGAATCACTTTTTCAGGTTTATTGGTTTTTATCTCAAAGCGCAATCTCT
CCTGTAATGAAGCTGAAAACAAGATGCCTGCCAAGTTTCTTTATCTGTTA
TAATTTTCTTGTCTGCTTTTTACGTAAAAATTAAATAGGCTTTCTTAGAA
AAGCTTTATATATTTTTTAAAGTTAAGTCGATTTGTATGATAATTTTCTC
TTTTTGTAGCAGACTGCTCTTCTTTAAAAGTTTTGGTTGGTGTTCATTCA
CTTCATATGTTTTATAGATGGTAGAATGACATTCATTTATCATGTATTTT
AGGAGAGGACCACGTCTTTGGCACAAATGGGTCGGTTTATGTCGTCGTAT
CAACCATTCTCTAGAGAAAGTCTTTACAAATCTTGGTTACATCATCACAA
AGCGACCGAATTTGACCATCATTCTTGGTGTGCTTATATCCTTAGCATTG
ATAGGTAAGATGTTTCAAATATTTTTAAACCCCTGTCACACTGTCCATTT
ACTCACAACATGCGTGAATTCGAAAACGCCGGATACTTTGAATTAATAAG
TTGTGGACTGTTGTCTTTTTAATCTTGAAATTCATCCTCTTTATGTTTTG
TCAAAAATGAGGCTTTCAATACCGGACCCTTTAAAATACAGAAAGATTTC
GTCAAAAGAAGCTCTCCAAAAAGTTCATCGATTCATCTACTAAAAAGACA
TTGATTTTGTTAAAGTTAACTTCCTCTTTTCCCAACACATAAGGTTTGTT
TTGTTTAATCATAGTACTACTTTTCGACTTGGGAAAAATCTAACTGTATC
GTCGATCTTCAGCGATTCCGCCATTTAAAAGGGTGGAAAGGTATCCCGTT
GCTCATTTACAAATATGCATTTCTTTATCAAACAGGTGGATTTGCTCGAT
ACAACCTCATCAAACGAGCTGAAGATCTTTATTTACCAAAGAACAGCGAA
GCCAGTAAAGATCTTGATCGAGTCGAAGAAAACTTTCCAATGAGTTTCAA
ATCAGAGTCGTTCATCATTCGGCCTAAAGACGCCAATGCGCCATTATTGA
CGGAAGAAATTTTCAAAGAAGCGTTAGAGATACACCATGAGATCATGAAT
ATTCCAGGTTTAACAGATGTTTGTATAATGAACGAACGGTTGAACACGTG
TGCTGTTCTATCACCGTTAGAATTTTTCAATTTCAACATCTCAAACATTC
AAAACGTATCACAGAGATTACATCAAGTGTTAAATGATTCTAAAGTTCTA
TCAAGTGATGGTCGACAAGCGTATACGAACTTCCCTTACTATTTCTCATA
TTTCGAAACAACTTTAACAACCCAGGGCATGCAAATCGTAAGAGCTGACG
CTTTGAAGACCGACTATTTTGTAAAAGATCCGTCGAGTAAAGGTATTTAT
GGAAAGCTGGAAAGTTTCGAAGATAAATACGTTGATATCATGTCCAGAAA
GGAGAGAGAGCTTGACAACAAAGGTTTAATTCTTCTATACAATTTTGGAC
GAAGCATTGACATCTCAGTTAGTGACTCAACACAGAAGGACATAATTTTA
GTACCTGTGGCTTTACTGCTGATGGTTATATTCTGCGGGCTGTCATTAGC
CCGATTCAGGAACCGAATACTTGGCCATTTCAATTTAGCACTTGCTGGTG
TTCTAATGTTATTCTTAGCAATCGCTTCTGCGTTTTGTTTTATCATGCTT
ATCGGAGCACCGTACATCGCATTCGCTGGAGTGCTACCTTTCCTTGTTCT
CGGGGTTGGTATCGACGATATATTTATTATCATCGATTCCGTCGATCGCC
AACATCCATCAATCAAATCGAACACCAGAATTGCCAAAGCTTTGGGTGAA
GTTTGCGCCTCTATAACAATGACTACTTTAACGGATCTTGTAGCTTTTTT
TGTTTCCATGGTGACTGATTTCCCAGCAATCCGATATTTTTGCATGTATG
CAGCATTTAGTATCACTTTCTGCTACATCTTGGTTATCACCGTGTTTGTG
GCTTTGTTGTCATTTGACGTGAAAAGGATTGAGGCGGGACAGTTCGATGT
CATTCCATGTGTTGCCAATAATAAAGAAACGACTGAGGAGGTCTGGGAAG
AAGCAGGTGAATCCATGATTAACAAGGTATGGAACTATCTTTTTATATCT
GATATTTTTTTTCTTTATAATATAGGTTACACGGTACACTAACGAACAAA
TAAGACGAAACACTACTGACAAAAAATAATGTCTGATATACCACTGTTTC
AAAACACCTATGGGTTTTCTCGTATCAGGGCTACAGTTTTCGATTCCGGC
AAGTTTTCAGGTCAGAAGCACTCACAGAAAAAATGAAAATATGATGATAA
GTTTGACTACATCTTTGGCTGAGCAAATAAAAACTTATGTTCAGATTATC
TTTTGTTAATTAAGTTTTTAACCAGAGAAAGATTTCACTTTAGGCAAAAA
TAAAAAATGTAGTGTTTCCGGAAACCGGTCAGGTGAAAAAATATAATTTT
CTGATCCGGTCGCAGACTTCGTTAGTAGTTGATACATTAGTATTCAGGGC
TTGCTTCATACTGTGTGTACATAAAAGTTATCTTTAAAGTTCTATTTCAA
TGATCTTAATTTATCAAAAATAGCAACAACAAAAAATTTTCCGGCCGGCC
GCATGAGTGCTTTTTCCTTCACCCGCATTCCGGAAACACTACATTTTTTT
ATTTTTTTACATTTTCGCCTTACATGTAGAAATAAACTCAAACGAAAAAT
CATATAAAAGTGTAACGCTATTCTACTTTTTCTCAATTCCAGCTGATCAC
GAAATACGCAGAAGTATTGATGCTGAAACCCATCAAAGCCATTGTCATCA
TCATTTCAATTGGGATGACTGCATTCGGAATCTACGGTGCAATCAATGTT
GACCAAAGCTTCAATCAATTAGTGTTGGGTCTTAAAGGATCAGCATATGT
CAAATACTTCGGTTATTTTGAAACTGGTTTCCCCAGTGGAATCCCAGTTA
ATGTAGTTTTAGATGCACCTTTGAACTACACAGATTCATCTTTACAGCAA
CAGTATAGCAATTTGAGTCAGATTGCGATTGATAACAATTATATGGAATC
ACAAACGTTTAACTGGATGCGAGATCTCCTCAGTTGGAGTAAAAACGAAA
ATATCACAGCTTCAGGCCGTCATTTTTATCCATCCTTATATCTCTTCTTG
CAAGAGAACCAACATTATTTAGTTGATATCAAATTTCATAAAAATTGGTT
ACAAGATATGTTAGAATGGTCAGTCGTACGGCAAAAGTTGGTCACTGTCG
ATAATTTCTACCAGAATTTAGAACAGTTTCTAATGGAGACTCCACAGATA
AGCGCTTATATGAAGTATAATTTCACAACAGACTCGTTTTTATTAAGATC
CAATACGAAAGAGACTTTCAAAACCTGTGATGGTGAATGCTTTTTAATCA
AAGCATCAAGGTTCATCATCCTTACCAAAGCTAATCATTTCTCCATCTAT
CGAAGAGACGCTATGTTGTCACTACGTGAAGATTTGAGAACGAAAACAGA
TTTACCGGTATACGGTGTTTCATATAATTACATATACGTGGAACAGTTTG
TGGTTATTCTACCAGATACTATACGTAATCTGGCTATTTGTGCATCCGCC
ATTTTGTTGATCACACTACCCTATTTAGTAGATCCGAAAGTGACCTTTTT
TGTTTTTTCGGGATTTGTATGTCTTATGTTCGAGCTGTTTGGCGTCATGT
ATTTATGGGACGTTTCACTGAATGCGATTTCTATGATAATAATCGTCATG
GGGATAGGGTTTTCAGTTGATTATTCTGCTCACATTGCGCATGCGTTTGT
CATTTGTAATGAGAAGACATCGGAGAGACGAGTCATCTATGCTATGAGAA
CGATGGGTGCAAGTGTCACAATGGGAGGTAAGATGAATGAACTAACCCAT
TTCGGTAGAGTTTTTTCCAGCCAGTGGGGGTAAAAATAATGGACTGAAAC
TCAGTGATATTGATAGACTCTCATGCTTTTTTTTATTCAAATTCCATTGT
TCTAAAGCCAGTGGGATGGAAAAAATCACACAATTTTTTTCAGTTAGGAA
AGAATTGTTGTATATAATTCTCCACTGGGGGCGATATTAAGGCGAAGTTG
GTGTGTATTACAGCCCTTAAATCTCGTTAAAAAATTCACTCACTTTAGTC
TCTGAGGAATTGGTTCCTGAAGGTCTGTATCGCATTCTTTATATGAATCT
TAATTAGTTAATCAACTTGTTTTTTTGAATCTTAGGTATATCAACATTCG
TGGGAGTGGTAACAACAGCTTTTGCACAAAGTGAACTTTTCAAAATCTTC
TTCAAGATGGTTTTTGGGATTGTTGTTCTTGGTTTGATTCATGGCTTGGT
CTTCCTGCCCGTCTTTCTCGCAGGTATTTTTCTCAATGATCTTTATCTGG
TCTTAAAAATCTTTTTTTTGCATTTAATGTACAAGAGTTTGGATCCCGTG
TGGATAGACTAAGACTATGTTTAGATGTTATGGCTCGAAACGAGACTGTC
GCAAAACACTTTGTGGGTACCAAAAATTTGAAACAAAGCAAAGTGGATCG
AAACAGCTATACTCCAATATTTTCGTTGAAACGGAACTGCTGCGTTTTCT
TGCTCCTAAACGTTCCAAAATCATAATATGAACACTTCCTATCTGAAACA
AAATCCATACCGAAGCGATGCTAAACCGGTCACCCGAAAGCCCCTTGCTT
AATCTAAGCACTGAAGTGTTGGAATTTTCCTTAAAAAACTTTGACTTGAA
AAGAAAATTTCCAAAAAATGCATTCTACTAAGAGCTAATGGTAATTATAT
TGGAACCCTGAATTTTTTTCTTGAATGACAATATTTACCATTCGTTATCT
TTTGTTTTTCAGTTTTTTGCAACTATAATGTTCCAATGACCGTCGAAGTT
GATGAAGAAGAAGAGAACGGAAATCTTTCGCCCAAGAAAAACAAAATGAA
TGGAGAAGAAGAACTTTTGACTATGGAAGATATTCCTGATACTGATAAAA
TGTTATAGTACACTGTCCATCATAGCATATACGTTTGTATAAGAACAAAC
TATATAAGAACATAAGGCTTCGATGGTCAAAATGTTAAGAATAAGTTAAG
ATCATATTAAGGTCTTGTGTACTCTAAAACACCCAATTTCTTAGGAAAAA
ATGAACAAAAATACTCCAAAAATGTCATTTAAGAACGTTTTTAGGCCTAA
AACTCAAAAAGTTAAGAACATCCCAAGGCTTGAAAAATTTTGTGTATACT
ATTTCCTTAATTTTTCTGAGGAAGAAGACTTGACTGGTTAAAAAATCACA
TTTAGCATTTTGTTTATGGTCTCGTTTTCATGGATTCATAAACATCAAGG
TTTGGATAGATTCTATAATTCTTTTATTGTACATATTTTGAATTTTCAAA
TCAAATTGAGATTCTTGTTTTGTAATTATCTTAAGAAAATATAGCCTTGG
AGGAAGATTTTTTTGAAAATGCATAGGCTGCTTTTGAGTACATTTAAATT
TTGGGCCATCTTCGGAGGTCCTATAAATTAACCCACAATCATGGCCAAAA
TTAATGTAATTCGTCACTTTTTTGGTACGAATTCAGTCATTTTATTTTCC
TATTTTCTTATTGCATTAATCTTCAGGTAGCTCCATTCCGTATGTAGCTT
ACTGTTTTTACTACCTTAAGGGAACTAATTTTGGCGGGAACTAATTTTGA
CGGGAAGCAAATATCCTAAAAAAATTTAATTTTGGCGGGAACTTATTTTG
GTGAATAGTGAATTTTTTTAATTTAGGCGGGAACTGTTTTTGGCGAATGA
CAGCATAAATCTGTTCTATTTTGCCTTATTTGAGCAATTTTGATGAATTT
CAGGGGTTATTTAGGCAAGGAAACAAAAAATTTACTTTTGGCGGAAACTT
ATTTTGGCGAGTGAGCAAAATATTTAATTTTGGCTAGAACTAATTTTGGC
AAATTTCGTCTAAATTCGCCAAATCCGCCAAAATTAGTTCCTGCCAAAAT
AAGTCNCTGGAAGTTCCATCCCGTAGATGTTATTTGGTAGACATGTGCTT
TCACCATTTTTGGGGATAGTTCTGCAAGGGTTATCAGCGGTGCCAATCAA
TCTCCTTGGCAACGAATCGACCAGCGTTGCCATTATCACCATGGTTACCA
AGAGGGTGAGAATATTCTTTTGTGTTGAGCTTCTTGAATTCGTGCTCTTC
ATCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021493XLOC_021493Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036468-exon-sc0001464-1575043694:28244..28403TCONS_00036468-exon-sc0001464-1575043694:28244..28403Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1575043694:23150..23301TCONS_00036468-exon-sc0001464-1575043694:23150..23301Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1575043694:21478..22718TCONS_00036468-exon-sc0001464-1575043694:21478..22718Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1575043694:19677..20811TCONS_00036468-exon-sc0001464-1575043694:19677..20811Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1575043694:19181..19318TCONS_00036468-exon-sc0001464-1575043694:19181..19318Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1575043694:17347..18691TCONS_00036468-exon-sc0001464-1575043694:17347..18691Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1510915933:28244..28403TCONS_00036468-exon-sc0001464-1510915933:28244..28403Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1510915933:23150..23301TCONS_00036468-exon-sc0001464-1510915933:23150..23301Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1510915933:21478..22718TCONS_00036468-exon-sc0001464-1510915933:21478..22718Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1510915933:19677..20811TCONS_00036468-exon-sc0001464-1510915933:19677..20811Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1510915933:19181..19318TCONS_00036468-exon-sc0001464-1510915933:19181..19318Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1510915933:17347..18691TCONS_00036468-exon-sc0001464-1510915933:17347..18691Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1491911889:28244..28403TCONS_00036468-exon-sc0001464-1491911889:28244..28403Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1491911889:23150..23301TCONS_00036468-exon-sc0001464-1491911889:23150..23301Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1491911889:21478..22718TCONS_00036468-exon-sc0001464-1491911889:21478..22718Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1491911889:19677..20811TCONS_00036468-exon-sc0001464-1491911889:19677..20811Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1491911889:19181..19318TCONS_00036468-exon-sc0001464-1491911889:19181..19318Clytia hemisphaericaexon
TCONS_00036468-exon-sc0001464-1491911889:17347..18691TCONS_00036468-exon-sc0001464-1491911889:17347..18691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001464supercontigsc0001464:17347..28403 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00324073	0	0	0	0.0576115	0.0654883	1.05027	0.196055	0.393374	0.477053	0.633858	0.310894	1.02456	1.04786	0.265069	0.448104	0.635827	0.959279	1.04962	0.97004	0.677011	0.972924	0	0.636798	0.0183759	6.0173e-05	2.38471	1.26626	0	0
Blast
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BLAST of TCONS_00036468 vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.735e-54
Identity = 240/965 (24.87%), Postives = 418/965 (43.32%), Query Frame = 3 
Query:  231 FTNLGYIITKRPNLTIILGVLISLALIGGFARYNLIKRAEDLYLPKNSEASKDLDRVEENFPMSFKSESFIIR------------PKDANAPL---LTEEIFKEALEIHHEIMNIPGLTDVCIMNERLNTCAV-LSPLEFFNFNIS--NIQNVSQRLHQVLNDSKVLSSDGRQAYTNFPYYFSYFETTLTTQGMQIVRADALKTDYFVKDPSSKGIYGK-------LESFEDK----------------YVDIMSRKER-------------ELDNKGLILLYNFGRSIDISVSDSTQKDIILVPVALLLMVIFCGLSLARFRN--RIL--GHFNLALAGVLMLFLAIASAFCFIMLIGAPY-IAFAGVLPFLVLGVGXXXXXXXXXSVDRQHPSIKSNT---RIAKALGEVCASITMTTLTDLVAFFVSMVTDFPAIRYFCMYAAFSITFCYILVITVFVALLSFDVKRIEAGQFDVIPCVANNKXXXXXXXXXXXXSMINKLITKYAEVLMLKPXXXXXXXXXXGMTAFGIYGAINVDQSFNQLVLGLKGSAYVKYFGYFETGFPSGIPVNVVLDAPLNYTDXXXXXXXXXXXXIAIDNNYMESQTFNWMRDLLSWSKNENITASGRHFYPSLYLFLQENQHYLVDIKFHKNWLQDMLEWSVVRQKLVTVDNFYQNLEQFL-------------------METPQISAYMKY--NFTTDSFLLRSNT------KETFKTCDGECFLIKASRFIILTKANHFSIYRRDAMLSLREDLRTKTD-LPVYGVSYN-------YIYVEQFVVILPDTIRNLAICASAILLITLPYLVDPKVTFFVFSGFVCL-MFELFGVMYLWDVSLNAISMIIIVMGIGFSVDYSAHIAHAFVICNEKTSERRVIYAMRTMGASVTMG-GISTFVGVVTTAFAQSELFKIF-FKMVFGIVVLGLIHGLVFLPVFLA 2825
            FT  G    + P   I   ++   A   G     +     DL+   +S+A  + +  +++F   F++E  IIR            P  A+ P    L  +I  + L++   I NI    D    NE +    + L+PL  +N N +  ++ N  Q  H VL+  K    D    Y ++  +F Y            VRA A   D  +      G +G        L  ++D+                Y +   + +R                N  L + +   RSI+  ++  +  D+  V ++  +M ++  L+L   ++  R+L     +L +AG+L++  ++A +      IG P  +    V+PFLVL VG+D+IFI++ +  R    ++  T   ++ + LGEV  S+ +++ ++ VAFF+  ++  PA+  F ++A  ++   ++L IT FV+LL  D+KR E  + D+  CV   ++ T     E+   +       Y+ +L+   ++ IVI I +G+ +F I     VD   +Q +     S  V YF        +G PV  VL+   +YT S  Q        +  +N+ +  Q FN        ++ +N T  G  F PS                   +W+ D  +W   +     VDN     +QF                     + PQ   +M++   F +D+   +                 G    + A+ F+        S    DA+   R      T+ + + G +Y        Y++ EQ++ I+ DTI NL +   AI L+T+  L     +  +    + + +  +FGVM+LW +SLNA+S++ +VM  G SV++ +HI  AF +  + +   R   A+  MG+SV  G  ++ F G+V  AFA+S++F+IF F+M   +V+LG  HGL+FLPV L+
Sbjct:  339 FTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYD----NETVTLQDICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKK---GDDFFVYADYHTHFLY-----------CVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQRDE-RLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSVQASES--CLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGG--MGCNNDSLVQQIFNA-------AQLDNYTRIG--FAPS-------------------SWIDDYFDWVKPQSSCCRVDNI---TDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLS 1249
The following BLAST results are available for this feature:
BLAST of TCONS_00036468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPC14.735e-5424.87Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE... [more]
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