TCONS_00036466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036466
Unique NameTCONS_00036466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4019

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036466 ID=TCONS_00036466|Name=TCONS_00036466|organism=Clytia hemisphaerica|type=transcript|length=4019bp
TTACCAATGAGAGGACCACGTCTTTGGCACAAATGGGTCGGTTTATGTCG
TCGTATCAACCATTCTCTAGAGAAAGTCTTTACAAATCTTGGTTACATCA
TCACAAAGCGACCGAATTTGACCATCATTCTTGGTGTGCTTATATCCTTA
GCATTGATAGGTGGATTTGCTCGATACAACCTCATCAAACGAGCTGAAGA
TCTTTATTTACCAAAGAACAGCGAAGCCAGTAAAGATCTTGATCGAGTCG
AAGAAAACTTTCCAATGAGTTTCAAATCAGAGTCGTTCATCATTCGGCCT
AAAGACGCCAATGCGCCATTATTgacggaagaaattttcaaagaagcGTT
AGAGATACACCATGAGATCATGAATATTCCAGGTTTAACAGATGTTTGTA
TAATGAACGAACGGTTGAACACGTGTGCTGTTCTATCACCGttagaattt
ttcaatttcaacatcTCAAACATTCAAAACGTATCACAGAGATTACATCA
AGTGTTAAATGATTCTAAAGTTCTATCAAGTGATGGTCGACAAGCGTATA
CGAACTTCCCTTACTATTTCTCATATTTCGAAACAACTTTAACAACCCAG
GGCATGCAAATCGTAAGAGCTGACGCTTTGAAGACCGACTATTTTGTAAA
AGATCCGTCGAGTAAAGGTATTTATGGAAAGCTGGAAAGTTTCGAAGATA
AATACGTTGATATCATGTCCAGAAAGGAGAGAGAGCTTGACAACAAAGGT
TTAATTCTTCTATACAATTTTGGACGAAGCATTGACATCTCAGTTAGTGA
CTCAACACAGAAGGACATAATTTTAGTACCTGTGGCTTTACTGCTGATGG
TTATATTCTGCGGGCTGTCATTAGCCCGATTCAGGAACCGAATACTTGGC
CATTTCAATTTAGCACTTGCTGGTGTTCTAATGTTATTCTTAGCAATCGC
TTCTGCGTTTTGTTTTATCATGCTTATCGGAGCACCGTACATCGCATTCG
CTGGAGTGCTACCTTTCCTTGTTCTCGGGGTTGGTATCGACGATATATTT
ATTATCATCGATTCCGTCGATCGCCAACATCCATCAATCAAATCGAACAC
CAGAATTGCCAAAGCTTTGGGTGAAGTTTGCGCCTCTATAACAATGACTA
CTTTAACGGATCTTGTAGCTTTTTTTGTTTCCATGGTGACTGATTTCCCA
GCAATCCGATATTTTTGCATGTATGCAGCATTTAGTATCACTTTCTGCTA
CATCTTGGTTATCACCGTGTTTGTGGCTTTGTTGTCATTTGACGTGAAAA
GGATTGAGGCGGGACAGTTCGATGTCATTCCATGTGTTGCCAATAATAAA
GAAACGACTGAGGAGGTCTGGGAAGAAGCAGGTGAATCCATGATTAACAA
GCTGATCACGAAATACGCAGAAGTATTGATGCTGAAACCCATCAAAGCCA
TTGTCATCATCATTTCAATTGGGATGACTGCATTCGGAATCTACGGTGCA
ATCAATGTTGACCAAAGCTTCAATCAATTAGTGTTGGGTCTTAAAGGATC
AGCATATGTCAAATACTTCGGTTATTTTGAAACTGGTTTCCCCAGTGGAA
TCCCAGTTAATGTAGTTTTAGATGCACCTTTGAACTACACAGATTCATCT
TTACAGCAACAGTATAGCAATTTGAGTCAGATTGCGATTGATAACAATTA
TATGGAATCACAAACGTTTAACTGGATGCGAGATCTCCTCAGTTGGAGTA
AAAACGAAAATATCACAGCTtcaggccgtcatttttatccATCCTTATAT
CTCTTCTTGCAAGAGAACCAACATTATTTAGTTGatatcaaatttcataa
aaattggTTACAAGATATGTTAGAATGGTCAGTCGTACGGCAAAAGTTGG
TCACTGTCGATAATTTCTACCAGAATTTAGAACAGTTTCTAATGGAGACT
CCACAGATAAGCGCTTATATGAAGTATAATTTCACAACAGACTCGTTTTT
ATTAAGATCCAATACGAAAGAGACTTTCAAAACCTGTGATGGTGAATGCT
TTTTAATCAAAGCATCAAGGTTCATCATCCTTACCAAAGCTAATCATTTC
TCCATCTATCGAAGAGACGCTATGTTGTCACTACGTGAAGATTTGAGAAC
GAAAACAGATTTACCGGTATACGGTGTTTCATATAATTACATATACGTGG
AACAGTTTGTGGTTATTCTACCAGATACTATACGTAATCTGGCTATTTGT
GCATCCGCCATTTTGTTGATCACACTACCCTATTTAGTAGATCCGAAAGt
gaccttttttgttttttcgggATTTGTATGTCTTATGTTCGAGCTGTTTG
GCGTCATGTATTTATGGGACGTTTCACTGAATGCGATTTCTATGATAATA
ATCGTCATGGGGATAGGGTTTTCAGTTGATTATTCTGCTCACATTGCGCA
TGCGTTTGTCATTTGTAATGAGAAGACATCGGAGAGACGAGTCATCTATG
CTATGAGAACGATGGGTGCAAGTGTCACAATGGGAGGTATATCAACATTC
GTGGGAGTGGTAACAACAGCTTTTGCACAAAGtgaacttttcaaaatctt
cttcAAGATGGTTTTTGGGATTGTTGTTCTTGGTTTGATTCATGGCTTGG
TCTTCCTGCCCGTCTTTCTCGCAGttttttgcaACTATAATGTTCCAATG
ACCGTCGAagttgatgaagaagaagagaacGGAAATCTTTCGcccaagaa
aaacaaaatgaatgGAGAAGAAGAACTTTTGACTATGGAAGATATTCCTG
ATACTGATAAAATGTTATAGTACACTGTCCATCATAGCATATACGtttgt
ataagaacaaactatataagaacataaggcttcgatggtcaaaatgttaa
gaataagttaagatcATATTAAGGTCTTGTgtactctaaaacacccaatt
tcttaggaaaaaatgaacaaaaatactccaaaaatgtcatttaagaacgt
ttttaggcctaaaactcaaaaagttaagaacatcccaaggcttgaaaaat
tttgtgtatACTATTTCCTTAATTTTTCTGAGGAAGAAGACTtgactGgt
taaaaaatcacatttagCATTTTGTTTATGGTCTCGTTTTCATGGATTCA
TAAACATCAAGGTTTGGATAGATTCTATAATTCTTTTATTGtacatattt
tgaattttcaaatcaaattgaGATTCTTGTTTTGTAATTATCTTAAGAAA
ATATAGCCTTGGaggaagatttttttgaaaatgcatAGGCTGCTTTTGAG
TACATTTAAATTTTGGGCCATCttcggaggtcctataaattaacccacaA
TCATGGCCAAAATTAATGTAATTCGTCACTTTTTTGGTACGAATTCAGTC
ATtttattttcctattttcttaTTGCATTAATCTTCAGGTAGCTCCATTC
CGTATGTAGCTTACTGTTtttactaccttaagggaactaattttggcggg
aactaattttgacgggaagcaaatatcctaaaaaaatttaattttggcgg
gaacttattttggtgaatagtgaatttttttaatttaggcgGGAACTgtt
tttggcgaatgacagcataaatctgttctattttgccttatttgagcaat
tttgatgaatttcaggggttatttaggcaaggaaacaaaaaatttacttt
tggcggaaacttattttggcgagtgagcaaaatatttaattttggctaga
actaattttggcaaatttcgtctaaattcgccaaatccgccaaaattagt
tcctgccaaAATAAGTCNCTGGAAGTTCCATCCCGTAGATGTTATTTGGT
AGACATGTGCTTTCACCATTTTTGGGGATAGTTCTGCAAGGGTTATCAGC
GGTGCCAATCAATCTCCTTGGCAACGAATCGACCAGCGTTGCCATTATCA
CCATGGTTACCAAGAGGGTGAGAATATTCTTTTGTGTTGAGCTTCTTGAA
TTCGTGCTCTTCATCTTAG
Run BLAST on NCBI

transcript from alignment at sc0001464:17347..24856-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036466 ID=TCONS_00036466|Name=TCONS_00036466|organism=Clytia hemisphaerica|type=transcript|length=7510bp|location=Sequence derived from alignment at sc0001464:17347..24856- (Clytia hemisphaerica)
TTACCAATGTGAGTAGCTCAATTTTTGCGAGACATGCTTGGCAGTACTCT
AGAAGTAGGAAGCCCAGCTGGCAAACGTCGTTTTAGCGTTACATGAAAGT
TAAGGACGTCAGATTGACGTTGATATAACTTTCTGTACCATCTTGAGCAC
AATTTTATTCGAGTTGAGGAAATTTCAAAAGTTGAAGTATTATTAACGGA
AGGGACTAGAAAACATTGTTTGAGTTAAGGAGACATTCGAGTTCTAGATG
TTCGAGTTAAAGAGATTCCGCTGTATATCTACAATCACCCCTGTGGTAGT
CGGCAGTAGAAAGTATTTTCCTAGACTCTTCATGTGTTTTTTATCACTTA
AAACCTACACGTTTTTTTTATAAGGAACACATGGGCAAGCGAAATCGTCG
GCCTTTTCAATACACGTCAGATCTGAATCTGACGGTATTCCAAAAAACAT
TAGACGTATTATAGAGTAGTATGGTTGTAACATGATATATAATATACTAT
TTAAAAAAATATTTCGCCTGCCTATACATTGCGAGCTTGCCACACGTTTA
TAAGGAGCTCGTCGAGGCTGAAAATGGTCCAAAAAATAAGGAATGGTTAA
GGAACTGGTCAGGCTGAGAATAAGAAACTAAGTTTTAAGGAATCCAATTT
TTGCGAATCCAAACTTAGTAGCTATGTAAAAAAGGAACTTGATAAGGAAC
TTTGATGTTGAAATTCTCTGTAAAAATAAGGAACTCCAGGCTCAGAGCAA
AGTTAAGGTTCCTTATAAAAAAAAACGTGTACCAAAACTTCAGAGTGTGG
TTTCAGTTCTCTGGGGCTCCGCATCTATTAAGGTCGGAGGCTTGAGGCTA
AAAGGAGGTATAAGAACATTCAAAATTTTTGAAGTCTTTGGATGTTCTTA
GCTTTTTGAGTTTTAAGCCTAAAAATATTTTTAACATGTTCTTATTTTCA
CCATTTCGTGAGTATTTTTTGTCCATTTTCCTAAGAAACCGGGTGTTTTA
GAGTTCGCAAATCCTGGCTATTTATCGAAGCCTTTTGTTCTTATATAGTT
TGTTCATGTTTGTTCTTATAATATGACTGCACTGATTTTAGCTTATGATA
TGAAAGACAACCAAAGAAATTATAGAAGCAATGCTAGAAAAAAATGCGGG
GAGACTAATCCTAGCTTACTCTCGGCAACGTCATAACTGTGTTTTTCATT
CAATAACCTTTTTATAATGTTGTTATAACGGTCGCCACCACCCACCACAC
CAAAAGAATCACTTTTTCAGGTTTATTGGTTTTTATCTCAAAGCGCAATC
TCTCCTGTAATGAAGCTGAAAACAAGATGCCTGCCAAGTTTCTTTATCTG
TTATAATTTTCTTGTCTGCTTTTTACGTAAAAATTAAATAGGCTTTCTTA
GAAAAGCTTTATATATTTTTTAAAGTTAAGTCGATTTGTATGATAATTTT
CTCTTTTTGTAGCAGACTGCTCTTCTTTAAAAGTTTTGGTTGGTGTTCAT
TCACTTCATATGTTTTATAGATGGTAGAATGACATTCATTTATCATGTAT
TTTAGGAGAGGACCACGTCTTTGGCACAAATGGGTCGGTTTATGTCGTCG
TATCAACCATTCTCTAGAGAAAGTCTTTACAAATCTTGGTTACATCATCA
CAAAGCGACCGAATTTGACCATCATTCTTGGTGTGCTTATATCCTTAGCA
TTGATAGGTAAGATGTTTCAAATATTTTTAAACCCCTGTCACACTGTCCA
TTTACTCACAACATGCGTGAATTCGAAAACGCCGGATACTTTGAATTAAT
AAGTTGTGGACTGTTGTCTTTTTAATCTTGAAATTCATCCTCTTTATGTT
TTGTCAAAAATGAGGCTTTCAATACCGGACCCTTTAAAATACAGAAAGAT
TTCGTCAAAAGAAGCTCTCCAAAAAGTTCATCGATTCATCTACTAAAAAG
ACATTGATTTTGTTAAAGTTAACTTCCTCTTTTCCCAACACATAAGGTTT
GTTTTGTTTAATCATAGTACTACTTTTCGACTTGGGAAAAATCTAACTGT
ATCGTCGATCTTCAGCGATTCCGCCATTTAAAAGGGTGGAAAGGTATCCC
GTTGCTCATTTACAAATATGCATTTCTTTATCAAACAGGTGGATTTGCTC
GATACAACCTCATCAAACGAGCTGAAGATCTTTATTTACCAAAGAACAGC
GAAGCCAGTAAAGATCTTGATCGAGTCGAAGAAAACTTTCCAATGAGTTT
CAAATCAGAGTCGTTCATCATTCGGCCTAAAGACGCCAATGCGCCATTAT
TGACGGAAGAAATTTTCAAAGAAGCGTTAGAGATACACCATGAGATCATG
AATATTCCAGGTTTAACAGATGTTTGTATAATGAACGAACGGTTGAACAC
GTGTGCTGTTCTATCACCGTTAGAATTTTTCAATTTCAACATCTCAAACA
TTCAAAACGTATCACAGAGATTACATCAAGTGTTAAATGATTCTAAAGTT
CTATCAAGTGATGGTCGACAAGCGTATACGAACTTCCCTTACTATTTCTC
ATATTTCGAAACAACTTTAACAACCCAGGGCATGCAAATCGTAAGAGCTG
ACGCTTTGAAGACCGACTATTTTGTAAAAGATCCGTCGAGTAAAGGTATT
TATGGAAAGCTGGAAAGTTTCGAAGATAAATACGTTGATATCATGTCCAG
AAAGGAGAGAGAGCTTGACAACAAAGGTTTAATTCTTCTATACAATTTTG
GACGAAGCATTGACATCTCAGTTAGTGACTCAACACAGAAGGACATAATT
TTAGTACCTGTGGCTTTACTGCTGATGGTTATATTCTGCGGGCTGTCATT
AGCCCGATTCAGGAACCGAATACTTGGCCATTTCAATTTAGCACTTGCTG
GTGTTCTAATGTTATTCTTAGCAATCGCTTCTGCGTTTTGTTTTATCATG
CTTATCGGAGCACCGTACATCGCATTCGCTGGAGTGCTACCTTTCCTTGT
TCTCGGGGTTGGTATCGACGATATATTTATTATCATCGATTCCGTCGATC
GCCAACATCCATCAATCAAATCGAACACCAGAATTGCCAAAGCTTTGGGT
GAAGTTTGCGCCTCTATAACAATGACTACTTTAACGGATCTTGTAGCTTT
TTTTGTTTCCATGGTGACTGATTTCCCAGCAATCCGATATTTTTGCATGT
ATGCAGCATTTAGTATCACTTTCTGCTACATCTTGGTTATCACCGTGTTT
GTGGCTTTGTTGTCATTTGACGTGAAAAGGATTGAGGCGGGACAGTTCGA
TGTCATTCCATGTGTTGCCAATAATAAAGAAACGACTGAGGAGGTCTGGG
AAGAAGCAGGTGAATCCATGATTAACAAGGTATGGAACTATCTTTTTATA
TCTGATATTTTTTTTCTTTATAATATAGGTTACACGGTACACTAACGAAC
AAATAAGACGAAACACTACTGACAAAAAATAATGTCTGATATACCACTGT
TTCAAAACACCTATGGGTTTTCTCGTATCAGGGCTACAGTTTTCGATTCC
GGCAAGTTTTCAGGTCAGAAGCACTCACAGAAAAAATGAAAATATGATGA
TAAGTTTGACTACATCTTTGGCTGAGCAAATAAAAACTTATGTTCAGATT
ATCTTTTGTTAATTAAGTTTTTAACCAGAGAAAGATTTCACTTTAGGCAA
AAATAAAAAATGTAGTGTTTCCGGAAACCGGTCAGGTGAAAAAATATAAT
TTTCTGATCCGGTCGCAGACTTCGTTAGTAGTTGATACATTAGTATTCAG
GGCTTGCTTCATACTGTGTGTACATAAAAGTTATCTTTAAAGTTCTATTT
CAATGATCTTAATTTATCAAAAATAGCAACAACAAAAAATTTTCCGGCCG
GCCGCATGAGTGCTTTTTCCTTCACCCGCATTCCGGAAACACTACATTTT
TTTATTTTTTTACATTTTCGCCTTACATGTAGAAATAAACTCAAACGAAA
AATCATATAAAAGTGTAACGCTATTCTACTTTTTCTCAATTCCAGCTGAT
CACGAAATACGCAGAAGTATTGATGCTGAAACCCATCAAAGCCATTGTCA
TCATCATTTCAATTGGGATGACTGCATTCGGAATCTACGGTGCAATCAAT
GTTGACCAAAGCTTCAATCAATTAGTGTTGGGTCTTAAAGGATCAGCATA
TGTCAAATACTTCGGTTATTTTGAAACTGGTTTCCCCAGTGGAATCCCAG
TTAATGTAGTTTTAGATGCACCTTTGAACTACACAGATTCATCTTTACAG
CAACAGTATAGCAATTTGAGTCAGATTGCGATTGATAACAATTATATGGA
ATCACAAACGTTTAACTGGATGCGAGATCTCCTCAGTTGGAGTAAAAACG
AAAATATCACAGCTTCAGGCCGTCATTTTTATCCATCCTTATATCTCTTC
TTGCAAGAGAACCAACATTATTTAGTTGATATCAAATTTCATAAAAATTG
GTTACAAGATATGTTAGAATGGTCAGTCGTACGGCAAAAGTTGGTCACTG
TCGATAATTTCTACCAGAATTTAGAACAGTTTCTAATGGAGACTCCACAG
ATAAGCGCTTATATGAAGTATAATTTCACAACAGACTCGTTTTTATTAAG
ATCCAATACGAAAGAGACTTTCAAAACCTGTGATGGTGAATGCTTTTTAA
TCAAAGCATCAAGGTTCATCATCCTTACCAAAGCTAATCATTTCTCCATC
TATCGAAGAGACGCTATGTTGTCACTACGTGAAGATTTGAGAACGAAAAC
AGATTTACCGGTATACGGTGTTTCATATAATTACATATACGTGGAACAGT
TTGTGGTTATTCTACCAGATACTATACGTAATCTGGCTATTTGTGCATCC
GCCATTTTGTTGATCACACTACCCTATTTAGTAGATCCGAAAGTGACCTT
TTTTGTTTTTTCGGGATTTGTATGTCTTATGTTCGAGCTGTTTGGCGTCA
TGTATTTATGGGACGTTTCACTGAATGCGATTTCTATGATAATAATCGTC
ATGGGGATAGGGTTTTCAGTTGATTATTCTGCTCACATTGCGCATGCGTT
TGTCATTTGTAATGAGAAGACATCGGAGAGACGAGTCATCTATGCTATGA
GAACGATGGGTGCAAGTGTCACAATGGGAGGTAAGATGAATGAACTAACC
CATTTCGGTAGAGTTTTTTCCAGCCAGTGGGGGTAAAAATAATGGACTGA
AACTCAGTGATATTGATAGACTCTCATGCTTTTTTTTATTCAAATTCCAT
TGTTCTAAAGCCAGTGGGATGGAAAAAATCACACAATTTTTTTCAGTTAG
GAAAGAATTGTTGTATATAATTCTCCACTGGGGGCGATATTAAGGCGAAG
TTGGTGTGTATTACAGCCCTTAAATCTCGTTAAAAAATTCACTCACTTTA
GTCTCTGAGGAATTGGTTCCTGAAGGTCTGTATCGCATTCTTTATATGAA
TCTTAATTAGTTAATCAACTTGTTTTTTTGAATCTTAGGTATATCAACAT
TCGTGGGAGTGGTAACAACAGCTTTTGCACAAAGTGAACTTTTCAAAATC
TTCTTCAAGATGGTTTTTGGGATTGTTGTTCTTGGTTTGATTCATGGCTT
GGTCTTCCTGCCCGTCTTTCTCGCAGGTATTTTTCTCAATGATCTTTATC
TGGTCTTAAAAATCTTTTTTTTGCATTTAATGTACAAGAGTTTGGATCCC
GTGTGGATAGACTAAGACTATGTTTAGATGTTATGGCTCGAAACGAGACT
GTCGCAAAACACTTTGTGGGTACCAAAAATTTGAAACAAAGCAAAGTGGA
TCGAAACAGCTATACTCCAATATTTTCGTTGAAACGGAACTGCTGCGTTT
TCTTGCTCCTAAACGTTCCAAAATCATAATATGAACACTTCCTATCTGAA
ACAAAATCCATACCGAAGCGATGCTAAACCGGTCACCCGAAAGCCCCTTG
CTTAATCTAAGCACTGAAGTGTTGGAATTTTCCTTAAAAAACTTTGACTT
GAAAAGAAAATTTCCAAAAAATGCATTCTACTAAGAGCTAATGGTAATTA
TATTGGAACCCTGAATTTTTTTCTTGAATGACAATATTTACCATTCGTTA
TCTTTTGTTTTTCAGTTTTTTGCAACTATAATGTTCCAATGACCGTCGAA
GTTGATGAAGAAGAAGAGAACGGAAATCTTTCGCCCAAGAAAAACAAAAT
GAATGGAGAAGAAGAACTTTTGACTATGGAAGATATTCCTGATACTGATA
AAATGTTATAGTACACTGTCCATCATAGCATATACGTTTGTATAAGAACA
AACTATATAAGAACATAAGGCTTCGATGGTCAAAATGTTAAGAATAAGTT
AAGATCATATTAAGGTCTTGTGTACTCTAAAACACCCAATTTCTTAGGAA
AAAATGAACAAAAATACTCCAAAAATGTCATTTAAGAACGTTTTTAGGCC
TAAAACTCAAAAAGTTAAGAACATCCCAAGGCTTGAAAAATTTTGTGTAT
ACTATTTCCTTAATTTTTCTGAGGAAGAAGACTTGACTGGTTAAAAAATC
ACATTTAGCATTTTGTTTATGGTCTCGTTTTCATGGATTCATAAACATCA
AGGTTTGGATAGATTCTATAATTCTTTTATTGTACATATTTTGAATTTTC
AAATCAAATTGAGATTCTTGTTTTGTAATTATCTTAAGAAAATATAGCCT
TGGAGGAAGATTTTTTTGAAAATGCATAGGCTGCTTTTGAGTACATTTAA
ATTTTGGGCCATCTTCGGAGGTCCTATAAATTAACCCACAATCATGGCCA
AAATTAATGTAATTCGTCACTTTTTTGGTACGAATTCAGTCATTTTATTT
TCCTATTTTCTTATTGCATTAATCTTCAGGTAGCTCCATTCCGTATGTAG
CTTACTGTTTTTACTACCTTAAGGGAACTAATTTTGGCGGGAACTAATTT
TGACGGGAAGCAAATATCCTAAAAAAATTTAATTTTGGCGGGAACTTATT
TTGGTGAATAGTGAATTTTTTTAATTTAGGCGGGAACTGTTTTTGGCGAA
TGACAGCATAAATCTGTTCTATTTTGCCTTATTTGAGCAATTTTGATGAA
TTTCAGGGGTTATTTAGGCAAGGAAACAAAAAATTTACTTTTGGCGGAAA
CTTATTTTGGCGAGTGAGCAAAATATTTAATTTTGGCTAGAACTAATTTT
GGCAAATTTCGTCTAAATTCGCCAAATCCGCCAAAATTAGTTCCTGCCAA
AATAAGTCNCTGGAAGTTCCATCCCGTAGATGTTATTTGGTAGACATGTG
CTTTCACCATTTTTGGGGATAGTTCTGCAAGGGTTATCAGCGGTGCCAAT
CAATCTCCTTGGCAACGAATCGACCAGCGTTGCCATTATCACCATGGTTA
CCAAGAGGGTGAGAATATTCTTTTGTGTTGAGCTTCTTGAATTCGTGCTC
TTCATCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021493XLOC_021493Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036466-exon-sc0001464-1575043694:24849..24856TCONS_00036466-exon-sc0001464-1575043694:24849..24856Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1575043694:23150..23301TCONS_00036466-exon-sc0001464-1575043694:23150..23301Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1575043694:21478..22718TCONS_00036466-exon-sc0001464-1575043694:21478..22718Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1575043694:19677..20811TCONS_00036466-exon-sc0001464-1575043694:19677..20811Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1575043694:19181..19318TCONS_00036466-exon-sc0001464-1575043694:19181..19318Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1575043694:17347..18691TCONS_00036466-exon-sc0001464-1575043694:17347..18691Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1510915933:24849..24856TCONS_00036466-exon-sc0001464-1510915933:24849..24856Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1510915933:23150..23301TCONS_00036466-exon-sc0001464-1510915933:23150..23301Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1510915933:21478..22718TCONS_00036466-exon-sc0001464-1510915933:21478..22718Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1510915933:19677..20811TCONS_00036466-exon-sc0001464-1510915933:19677..20811Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1510915933:19181..19318TCONS_00036466-exon-sc0001464-1510915933:19181..19318Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1510915933:17347..18691TCONS_00036466-exon-sc0001464-1510915933:17347..18691Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1491911889:24849..24856TCONS_00036466-exon-sc0001464-1491911889:24849..24856Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1491911889:23150..23301TCONS_00036466-exon-sc0001464-1491911889:23150..23301Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1491911889:21478..22718TCONS_00036466-exon-sc0001464-1491911889:21478..22718Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1491911889:19677..20811TCONS_00036466-exon-sc0001464-1491911889:19677..20811Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1491911889:19181..19318TCONS_00036466-exon-sc0001464-1491911889:19181..19318Clytia hemisphaericaexon
TCONS_00036466-exon-sc0001464-1491911889:17347..18691TCONS_00036466-exon-sc0001464-1491911889:17347..18691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001464supercontigsc0001464:17347..24856 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0568026	0.151539	0.0984474	1.16779	0.241406	1.8991	0	1.01524	0.679317	0	0.888328	0.980427	0.408325	0.286744	2.39559e-08	0.000443816	0.0165562	0.00546498	1.26996	0.860804	3.12686e-09	1.02221	0	0.00870337	3.68189	0	4.61919e-06	0.0761922	0.112261
Blast
[Close]
BLAST of TCONS_00036466 vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.263e-54
Identity = 240/965 (24.87%), Postives = 418/965 (43.32%), Query Frame = 1 
Query:   79 FTNLGYIITKRPNLTIILGVLISLALIGGFARYNLIKRAEDLYLPKNSEASKDLDRVEENFPMSFKSESFIIR------------PKDANAPL---LTEEIFKEALEIHHEIMNIPGLTDVCIMNERLNTCAV-LSPLEFFNFNIS--NIQNVSQRLHQVLNDSKVLSSDGRQAYTNFPYYFSYFETTLTTQGMQIVRADALKTDYFVKDPSSKGIYGK-------LESFEDK----------------YVDIMSRKER-------------ELDNKGLILLYNFGRSIDISVSDSTQKDIILVPVALLLMVIFCGLSLARFRN--RIL--GHFNLALAGVLMLFLAIASAFCFIMLIGAPY-IAFAGVLPFLVLGVGXXXXXXXXXSVDRQHPSIKSNT---RIAKALGEVCASITMTTLTDLVAFFVSMVTDFPAIRYFCMYAAFSITFCYILVITVFVALLSFDVKRIEAGQFDVIPCVANNKXXXXXXXXXXXXSMINKLITKYAEVLMLKPXXXXXXXXXXGMTAFGIYGAINVDQSFNQLVLGLKGSAYVKYFGYFETGFPSGIPVNVVLDAPLNYTDXXXXXXXXXXXXIAIDNNYMESQTFNWMRDLLSWSKNENITASGRHFYPSLYLFLQENQHYLVDIKFHKNWLQDMLEWSVVRQKLVTVDNFYQNLEQFL-------------------METPQISAYMKY--NFTTDSFLLRSNT------KETFKTCDGECFLIKASRFIILTKANHFSIYRRDAMLSLREDLRTKTD-LPVYGVSYN-------YIYVEQFVVILPDTIRNLAICASAILLITLPYLVDPKVTFFVFSGFVCL-MFELFGVMYLWDVSLNAISMIIIVMGIGFSVDYSAHIAHAFVICNEKTSERRVIYAMRTMGASVTMG-GISTFVGVVTTAFAQSELFKIF-FKMVFGIVVLGLIHGLVFLPVFLA 2673
            FT  G    + P   I   ++   A   G     +     DL+   +S+A  + +  +++F   F++E  IIR            P  A+ P    L  +I  + L++   I NI    D    NE +    + L+PL  +N N +  ++ N  Q  H VL+  K    D    Y ++  +F Y            VRA A   D  +      G +G        L  ++D+                Y +   + +R                N  L + +   RSI+  ++  +  D+  V ++  +M ++  L+L   ++  R+L     +L +AG+L++  ++A +      IG P  +    V+PFLVL VG+D+IFI++ +  R    ++  T   ++ + LGEV  S+ +++ ++ VAFF+  ++  PA+  F ++A  ++   ++L IT FV+LL  D+KR E  + D+  CV   ++ T     E+   +       Y+ +L+   ++ IVI I +G+ +F I     VD   +Q +     S  V YF        +G PV  VL+   +YT S  Q        +  +N+ +  Q FN        ++ +N T  G  F PS                   +W+ D  +W   +     VDN     +QF                     + PQ   +M++   F +D+   +                 G    + A+ F+        S    DA+   R      T+ + + G +Y        Y++ EQ++ I+ DTI NL +   AI L+T+  L     +  +    + + +  +FGVM+LW +SLNA+S++ +VM  G SV++ +HI  AF +  + +   R   A+  MG+SV  G  ++ F G+V  AFA+S++F+IF F+M   +V+LG  HGL+FLPV L+
Sbjct:  339 FTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYD----NETVTLQDICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKK---GDDFFVYADYHTHFLY-----------CVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQRDE-RLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSVQASES--CLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGG--MGCNNDSLVQQIFNA-------AQLDNYTRIG--FAPS-------------------SWIDDYFDWVKPQSSCCRVDNI---TDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLS 1249
The following BLAST results are available for this feature:
BLAST of TCONS_00036466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPC14.263e-5424.87Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE... [more]
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