TCONS_00036461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036461
Unique NameTCONS_00036461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036461 ID=TCONS_00036461|Name=TCONS_00036461|organism=Clytia hemisphaerica|type=transcript|length=1587bp
CTTCATCTCGTATAACGTTTTAGCAGACAGCTTTGCATACATCTCGAAAG
AGAGAAAGAGATGGGCTTGCTAGAAGCATTCGGGTTTGAGCTCTTATTCA
TGTTAATTGAAGGGCTCTTTGTTTTAACACTTGGAGTTTGCTGCTACATT
TTGTCGTATTTCATCTCATGGTTTTACATTGTTggatttttctcccttct
ttaTTGGTTTTTGGTTACCGAGAGAACTCCTTCACCACAAGAAATCCGAA
AGCGTAAAGATACTTTTGTTGTCATCGTTGGTGCTGGCTATTCCGGATTA
TGTGCGGCTATTCGGTTGAAAAAAGAACGTATCCGCTTTGTTTTGATCGA
GAAATCGGAAACACTTGGCGGAACATGGTGGGATAACAAATATCCAGGGT
GTGCTTGTGACATCCCCTCGCATTTTTATAGTTTATCCTTTAAACTGAAC
GCGTTTTGGACAAAGATGTATTCTTCAGGAGATGAAATTCAGGACTATTT
AGAAGATACAGCTGATTATTACGGCATCCGAGAACACGTCAAATTCAGTT
GCAAAGTTGACACATGTGAATTCAACAAAGAGACACAAAAATGGTCAGTC
AAAACTTCAACAGGTCACGAATTCGAATGCAATTATCTCATCTCTGGAAT
GGGAGCTTTACATGTCCCTAAATTTCCCAGTTTGAAAGGAATGGAAGAAT
TTCAAGGAGAGCATTTTCACACTGCTCAATGGAAAGACGATTTTGATTGG
TCCGGAAAACGCGTAGGAATTATCGGTACTGGGAGCTCTTCAATTCAAGC
CGTACCGAAACTCGCCGAACGTTGTGAAGAGCTTTACGTCTTCCAAAGAA
CACCAGCTTGGATTTTCCCTCTCTTGAATTTGCGTTATCCAGCTatcatt
caaaaactttttcaagcTTTCCCATTTGTTATGAAGCTTCATCggttata
ttttttcttcagatcCGAATTTGTATTCGCCGCTTTCTTCGGGAAAGTAT
CGTTAGCCCGAGAGATTATCTCTAATCTGACCAACCAACTCATGTCGAAT
GAAGTTGCCGATCCCAAATTGGCTGAGAAACTTATTCCTAAGTACTCAAT
GTTTAGTAAAAGAATCACCATCTCGAACGattatttgaaaacttttaatc
gACCAAACGTTCATCTCATCACTGAACCGATTCAAGAAATTACCCATGAT
TCTATTCTCCTTAAAAATAACCAAGATGCATCAGCGAAAGAAGTTGAATT
AGATGCGATCATTTATGCAACAGGATTCGACGTTTTGCAAAGTTCGACAA
ATATGGATATCAAAAACCCAAATAACGGAAAGTCTTTATCAACAATTTGG
GGAGAAACACCGAATGCTTACTTGGGGATCATGGCAGCCGAAATACCGAA
CTTTTTCATCATACTTGGACCAGCAACAGGACTCGGCCACAATAGCGTAG
TGTTTATGATCGAGCGACAAGTAGATTTTATCATCAATATGATTACACAA
AATATTGAACAAGGTCATGCAGTTGTTGAGGTGAAAGAGGAAGCGAACAC
AGCGTATCAAGAAAGTATCCGGAAACAAACCAAAGAT
Run BLAST on NCBI

transcript from alignment at sc0001463:48220..51921-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036461 ID=TCONS_00036461|Name=TCONS_00036461|organism=Clytia hemisphaerica|type=transcript|length=3702bp|location=Sequence derived from alignment at sc0001463:48220..51921- (Clytia hemisphaerica)
CTTCATCTCGTATAACGTTTTAGCAGACAGCTTTGCATACATCTCGAAAG
AGGTTAGTATTTTTCATTCAATATCACTTTGTTCACTTGTAACTTAAAAT
GCTTTTTTTTTTTTTTGATACATTGTTAAATATTCTAATCCAACTCGATG
TTTCTGATATATACTTGACGTCGAGCTTAATATCCTAAGATACTAGTTAC
AGTCTGAAGCATCAAAGGTCCACCACATCCCAATAATTGGAATCTAAGAG
GTTCAGCACTTGCCAGAGGAAAAAGAAACACATTTAATTCTTTAAAAGTA
ACACCAATGTTTTCATTTTTGTTATAGAGAAAGAGATGGGCTTGCTAGAA
GCATTCGGGTTTGAGCTCTTATTCATGTTAATTGAAGGGCTCTTTGTTTT
AACACTTGGAGTTTGCTGCTACATTTTGTCGTATTTCATCTCATGGTTTT
ACATTGTTGGATTTTTCTCCCTTCTTTATTGGTTTTTGGTTACCGAGAGA
ACTCCTTCACCACAAGAAATCCGAAAGCGTAAAGATACTTTTGTTGTCAT
CGTTGGTGCTGGCTATTCCGGATTATGTGCGGCTATTCGGTTGAAAAAAG
AACGTATCCGCTTTGTTTTGATCGAGAAATCGGAAACACTTGGCGGAACA
TGGTGGGATAACAAATATCCAGGGTGTGCTTGTGACATCCCCTCGCATTT
TTATAGTTTATCCTTTAAACTGAACGCGTTTTGGACAAAGATGTATTCTT
CAGGAGATGAAATTCAGGACTATTTAGAAGATACAGCTGATTATTACGGC
ATCCGAGAACACGTCAAATTCAGTTGCAAAGTTGACACATGTGAATTCAA
CAAAGAGACACAAAAATGGTCAGTCAAAACTTCAACAGGTCACGAATTCG
AATGCAATTATCTCATCTCTGGAATGGGAGCTTTACATGTCCCTAAATTT
CCCAGTTTGAAAGGAATGGAAGAATTTCAAGGAGAGCATTTTCACACTGC
TCAATGGAAAGACGATTTTGATTGGTCCGGAAAACGCGTAGGAATTATCG
GTACTGGGAGCTCTTCAATTCAAGCCGTACCGAAACTCGCCGAACGTTGT
GAAGAGCTTTACGTCTTCCAAAGAACACCAGCTTGGATTTTCCCTCTCTT
GAATTTGCGTTATCCAGCTATCATTCAAAAACTTTTTCAAGCTTTCCCAT
TTGTTATGAAGCTTCATCGGTTATATTTTTTCTTCAGATCCGAATTTGTA
TTCGCCGCTTTCTTCGGGAAAGTATCGTTAGCCCGAGAGATTATCTCTAA
TCTGACCAACCAACTCATGTCGAATGAAGTTGCCGATCCCAAATTGGCTG
AGAAACTTATTCCTAAGTACTCAATGTTTAGTAAAAGAATCACCATCTCG
AACGATTATTTGAAAACTTTTAATCGACCAAACGTTCATCTCATCACTGA
ACCGATTCAAGAAATTACCCATGATTCTATTCTCCTTAAAAATAACCAAG
ATGCATCAGCGAAAGAAGTTGAATTAGATGCGATCATTTATGCAACAGGA
TTCGACGTTTTGCAAAGTTCGACAAATATGGATATCAAAAACCCAAATAA
CGGAAAGTCTTTATCAACAATTTGGGGAGAAACACCGAATGCTTACATGG
GGATCATGCCAGCCGGGCTACCGAACTTTTTCATGCTCTTCGGACCCGGA
ACTGTGCTAGGTAAGATTTGTATTGATGGTTGTTGATCAGCTTCAGGGTT
AGACTCTCACAAATTACACAAGCAAATAAATTTCATGAATAAGCATGAGC
TTGTATTATATGGATGAAAAAATGGATAAAGACTCGGGTTTGATTTTTAT
GTGTGATGAGTGTGTGTTTTTCATGTGCATGGAAGATGAAGCTTTAATGA
ATCCATGCGATATTCATTTGCCACTACCGGCAGAAATCACATCATCATGA
ATAGTATGAATCCCTTAATTTCTTCATGATTTCTTTTCAAATCTATTTCA
CTTTCATTTTTTATTTAGGGCACAGCAGTGCGATCTTTATGACGGNGAAA
GAAGTGGAATTGGATGCGATCATTTATGCAACAGGATTTGACGTTTTGGA
AAGTACGAAAAATATGGATATCAAAAACCCAAAAAACGGAAAATCTTTAT
CAACAATTTGGGGAGAGACACCGAATGCTTACTTGGGGATCATGGCAGCC
GAAATACCGAACTTTTTCATCATACTTGGACCAGCAACAGGACTCGGTAA
GAACTGCTCCAGTTACATCAAAATACTATTCGATCTTTTCCATCTTCCTC
TTTTTCAATTCTTGATTACTTTCGAAAAGCAAACATTCAGTCCCCTGTCC
ATTTCAATTCTAACCTCTGTTTGAGCCATAGGCGAGCCAGTGCAGTCCTG
ATAAGTCCCAATAAGGACAAAGTCTATACACACTTTAAACCTAAATCTCC
TGAGCGAATATAGTTGGATAGAAATGATAATTTCTTCACGTATAATCCTT
TAATTCTAAAGCTAAATTGCACTGCCTTGGTTCGATTATCGGTCGAAGAG
AGAGAGTGGTTTTTACATTTGTTTTTTTGCTTTTAATTACAGGCCACAAT
AGCGTAGTGTTTATGATCGAGCGACAAGTAGATTTTATCATCAATATGAT
TACACAAAATATTGAACAAGGTCATGCAGTTGTTGAGGTATGTTCACATA
TTATATTTGTTGACGCAAGAGGTTCTTTTAACGTTCATTTAATGTTTTAT
TGATGTCATGGACATTATATGGATGCTTGTTTAACCACGGCGGCAAAAAA
TGGCCTTTTTTCTCCCACTCGCTCAGCAACCTAATACAACTTGCGGCATT
TTCGACCACTTTGTTGATCATTATACACTTTTTGTTCCACCATCAACCTT
TATATGAATTTCCAAAATAAATTCCAAAAAAATTTAGAATATAGAAAAAA
GAATTGTCACGTGATAGCTGATGACGTCATCGAATTTAGAACGAAAAAAT
AAAAATTCAGTTAGCTCTTTGGTAGTACGACCATTCGATAGCTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACGACCATTC
GATAGCTCTCAATGAGTAGTGCTCGAAAATGGGGTCACTTGTTATCGAGA
CCCTTCTGAAACTCGAAAAATTTAGATTTTCGTTTTGCCAATATATGGTA
AAAATCAACGATTGACCAGGTNAATTTTTTGAAATTTGAATTTTTTTTGC
AAAATCATATCCTTTAAGAATATCTATAGGTTTGACAACCTAACAGTCAC
TAATAAGCTAATTTATGGCCAGTGGGAGAAAATAACTCATTTTTTGCCGC
CGTGAACGATAGATTGGGGTCACGCAGTATCAAGATTCAAATTAGATAAG
ACACTCAACGTGTACAAATTTCAAATATTCTTGCTTGACCTTAATCTCGC
CTTGAATTATCATAATATTTGCAATAGGTTCGAGCATTGATTCGCTGATA
TTGCAATATTTTTTGAGACATACAGGTAATCATACGTAAAAATTGCTCGA
AGCTAGTTCTAAAGTCTTTCTTTTTTTCTTAACTTTCCAACTTAGGTGAA
AGAGGAAGCGAACACAGCGTATCAAGAAAGTATCCGGAAACAAACCAAAG
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021489XLOC_021489Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036461-exon-sc0001463-1575043694:51870..51921TCONS_00036461-exon-sc0001463-1575043694:51870..51921Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1575043694:50276..51594TCONS_00036461-exon-sc0001463-1575043694:50276..51594Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1575043694:49676..49739TCONS_00036461-exon-sc0001463-1575043694:49676..49739Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1575043694:49235..49329TCONS_00036461-exon-sc0001463-1575043694:49235..49329Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1575043694:48220..48276TCONS_00036461-exon-sc0001463-1575043694:48220..48276Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1510915933:51870..51921TCONS_00036461-exon-sc0001463-1510915933:51870..51921Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1510915933:50276..51594TCONS_00036461-exon-sc0001463-1510915933:50276..51594Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1510915933:49676..49739TCONS_00036461-exon-sc0001463-1510915933:49676..49739Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1510915933:49235..49329TCONS_00036461-exon-sc0001463-1510915933:49235..49329Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1510915933:48220..48276TCONS_00036461-exon-sc0001463-1510915933:48220..48276Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1491911889:51870..51921TCONS_00036461-exon-sc0001463-1491911889:51870..51921Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1491911889:50276..51594TCONS_00036461-exon-sc0001463-1491911889:50276..51594Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1491911889:49676..49739TCONS_00036461-exon-sc0001463-1491911889:49676..49739Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1491911889:49235..49329TCONS_00036461-exon-sc0001463-1491911889:49235..49329Clytia hemisphaericaexon
TCONS_00036461-exon-sc0001463-1491911889:48220..48276TCONS_00036461-exon-sc0001463-1491911889:48220..48276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001463supercontigsc0001463:48220..51921 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.01443	1.62362	1.26419	1.33231	0.504071	0.860954	0	1.05095	0.205021	0.000499211	1.64013	0	1.47718	5.33667	5.00717	4.72461	3.2147	3.7597	2.54609	4.74051	3.23503	3.61922	2.47458	4.15761	5.03207	2.53072	2.09411	4.25237	0.0578205	5.25248
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top