TCONS_00036453 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036453
Unique NameTCONS_00036453
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length756

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036453 ID=TCONS_00036453|Name=TCONS_00036453|organism=Clytia hemisphaerica|type=transcript|length=756bp
ACCGGAAAACCCGCCCCAGACCTTTTCTGGTATTTTGAAGATGATTGGAC
AACAGCGTTGACAAACACAAGTGATTACCTCATCACTGACTGGAGTACGG
ACACGGTTGGCAATGAAACCATTGTGACGTCAGATTTGACGATCACGAGT
GCGGGTCATCAAGATGTCGGCAATTATTCTTGTGGAGCTAAAAACAAACT
GACTGAAAAGAGAATTTACAGAAGAGTTGATGTCTATTACGCTCCGAGAA
ACACAACATTGAATGCTACAGTGAACCCGGTTCATCTTCTTTCCACCACG
CTTCTTCAATGTGATACTGATGCATCCACTGAACCCATGTATTACCTCAT
CTACAAAGATGGTAGCTTGGTTGCCAACGTTACAGATGGGATATACAATA
TTTCATCTGTGGTGTATTCAGACAGTGGTAATTACACGTGCCACCCGTAC
AATGTGATGGGCTTTGGTGATAATGCAACGCTTGCGTTGGAAGTAACAGC
GCAACCGATCCTCGATAATTACACAAGTCCTGTCTACGGTATCAAACCTC
AATCATCAAGTCTAACTTGCACCTTCTATGGGAATCCAGCGCCTGAAATC
ACTTGGACAAAACTGGATGGTGGTGTGTTATACGATAACATCACAACAGA
GACTATCGATAAATGTGTAGGGACCATCGTCTTCAAAACATCAACGGTTA
CTTTCAATCCAACTGAATTAGAACATTATGGAACGTACGAATGTTCCGCT
GATAAT
Run BLAST on NCBI

protein sequence of TCONS_00036453-protein

>TCONS_00036453-protein ID=TCONS_00036453-protein|Name=TCONS_00036453-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
TGKPAPDLFWYFEDDWTTALTNTSDYLITDWSTDTVGNETIVTSDLTITS
AGHQDVGNYSCGAKNKLTEKRIYRRVDVYYAPRNTTLNATVNPVHLLSTT
LLQCDTDASTEPMYYLIYKDGSLVANVTDGIYNISSVVYSDSGNYTCHPY
NVMGFGDNATLALEVTAQPILDNYTSPVYGIKPQSSSLTCTFYGNPAPEI
TWTKLDGGVLYDNITTETIDKCVGTIVFKTSTVTFNPTELEHYGTYECSA
DN
Run BLAST on NCBI

transcript from alignment at sc0001463:6071..7996+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036453 ID=TCONS_00036453|Name=TCONS_00036453|organism=Clytia hemisphaerica|type=transcript|length=1926bp|location=Sequence derived from alignment at sc0001463:6071..7996+ (Clytia hemisphaerica)
ACCGGAAAACCCGCCCCAGACCTTTTCTGGTATTTTGAAGATGATTGGAC
AACAGCGTTGACAAACACAAGTGATTACCTCATCACTGACTGGAGTACGG
ACACGGTTGGCAATGAAACCATTGTGACGTCAGATTTGACGATCACGAGT
GCGGGTCATCAAGATGTCGGCAATTATTCTTGTGGAGCTAAAAACAAACT
GACTGAAAAGAGAATTTACAGAAGAGTTGATGTCTATTGTAAGTGTATTT
GATTATCATCTAATATTCTTATAGCCTTTATACAGTCAGCTCTCTCAATT
GTGATTAGAACTTTTATAGATTTGGTCATTTTTTCATAATCTTGAAATCA
ATCTTGCTCCTATTTTGCTTGGATGAGCTGAAATATTCAAATTAATTACT
GAAGGAAATTTTCGTGACTCGTTTCACTTTTTAATTAAAGATACATATTC
CTTTTTGCGATACGGAAAGGAGGCAAGCCTCTTaaatgctgacaaagcag
aattaacaaaaaaaattccataagaTTGTGCTCACGCGGTGCAGGAGGGT
GGGAAAGTTCTTtcctttttgttaaaaaaatgctgttTAAGCAAATGGTA
AGAGATCATTCATTTATtggactcttccagaaaaaaaatgattatgGGTG
GGGTctgaggatataacattttatgGTAGTTTACCCCCTCCCGGACACAC
ACTTTAGACCCCAGACAACAGGTCTAACCCCCTGAACAAATATCAGTCGA
tccccggacattcaaaattaccccaaAACAGGNAGACAACAGGTCTAACC
CCCTGAACAAATATCAGTCGATCCCCGGACATTCAAAACTACCCCAAAAC
AGGCCAACAaggtaaattttgtaaatttttcactATCCCCCCCGggcaat
atatcctccaccccctatgtacaaacattttctggaagagctcaTTCCGA
ACTTTTATTATTGGTTTTCTTCAGACGCTCCGAGAAACACAACATTGAAT
GCTACAGTGAACCCGGTTCATCTTCTTTCCACCACGCTTCTTCAATGTGA
TACTGATGCATCCACTGAACCCATGTATTACCTCATCTACAAAGATGGTA
GCTTGGTTGCCAACGTTACAGATGGGATATACAATATTTCATCTGTGGTG
TATTCAGACAGTGGTAATTACACGTGCCACCCGTACAATGTGATGGGCTT
TGGTGATAATGCAACGCTTGCGTTGGAAGTAACAGGTATGTATATGTATA
TGTAATAACCCAAAAATATAGTCTGATATGAACCAAATTCTTTCTTATTT
AGTAGCTGACGAATGTCCAAAGACATTAAAATCGGAGtactacaaaaaat
gaaatagttGTTTTTTCTTGATGATTATATAAATGCAAAAAATTAACCAA
TCAATCTGAAACTGCCAGTTGCAAGCAAAAAGTTGTGAGAATTCGCTCCA
AAATTCCATAGTTTTTCATTACATTTTGAAGATACAGGGGTGGGTGAAAC
CCAGAATACCGGCTCCCTAGACTTCTACCGAGCTACAATCAaataatatt
tgataaaaagagGAATTCCCTACAAAGTTCTTGTAAACACCAAAAGTGAT
ATTTAGTCACTTCTGTAATGTAGAGGATTTCAACTCTGAGACACACGATT
ATACTTATTCCATTTTCAGCGCAACCGATCCTCGATAATTACACAAGTCC
TGTCTACGGTATCAAACCTCAATCATCAAGTCTAACTTGCACCTTCTATG
GGAATCCAGCGCCTGAAATCACTTGGACAAAACTGGATGGTGGTGTGTTA
TACGATAACATCACAACAGAGACTATCGATAAATGTGTAGGGACCATCGT
CTTCAAAACATCAACGGTTACTTTCAATCCAACTGAATTAGAACATTATG
GAACGTACGAATGTTCCGCTGATAAT

Coding sequence (CDS) from alignment at sc0001463:6071..7996+

>TCONS_00036453 ID=TCONS_00036453|Name=TCONS_00036453|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at sc0001463:6071..7996+ (Clytia hemisphaerica)
ACCGGAAAACCCGCCCCAGACCTTTTCTGGTATTTTGAAGATGATTGGAC
AACAGCGTTGACAAACACAAGTGATTACCTCATCACTGACTGGAGTACGG
ACACGGTTGGCAATGAAACCATTGTGACGTCAGATTTGACGATCACGAGT
GCGGGTCATCAAGATGTCGGCAATTATTCTTGTGGAGCTAAAAACAAACT
GACTGAAAAGAGAATTTACAGAAGAGTTGATGTCTATTACGCTCCGAGAA
ACACAACATTGAATGCTACAGTGAACCCGGTTCATCTTCTTTCCACCACG
CTTCTTCAATGTGATACTGATGCATCCACTGAACCCATGTATTACCTCAT
CTACAAAGATGGTAGCTTGGTTGCCAACGTTACAGATGGGATATACAATA
TTTCATCTGTGGTGTATTCAGACAGTGGTAATTACACGTGCCACCCGTAC
AATGTGATGGGCTTTGGTGATAATGCAACGCTTGCGTTGGAAGTAACAGC
GCAACCGATCCTCGATAATTACACAAGTCCTGTCTACGGTATCAAACCTC
AATCATCAAGTCTAACTTGCACCTTCTATGGGAATCCAGCGCCTGAAATC
ACTTGGACAAAACTGGATGGTGGTGTGTTATACGATAACATCACAACAGA
GACTATCGATAAATGTGTAGGGACCATCGTCTTCAAAACATCAACGGTTA
CTTTCAATCCAACTGAATTAGAACATTATGGAACGTACGAATGTTCCGCT
GATAATACCGGAAAACCCGCCCCAGACCTTTTCTGGTATTTTGAAGATGA
TTGGACAACAGCGTTGACAAACACAAGTGATTACCTCATCACTGACTGGA
GTACGGACACGGTTGGCAATGAAACCATTGTGACGTCAGATTTGACGATC
ACGAGTGCGGGTCATCAAGATGTCGGCAATTATTCTTGTGGAGCTAAAAA
CAAACTGACTGAAAAGAGAATTTACAGAAGAGTTGATGTCTATTACGCTC
CGAGAAACACAACATTGAATGCTACAGTGAACCCGGTTCATCTTCTTTCC
ACCACGCTTCTTCAATGTGATACTGATGCATCCACTGAACCCATGTATTA
CCTCATCTACAAAGATGGTAGCTTGGTTGCCAACGTTACAGATGGGATAT
ACAATATTTCATCTGTGGTGTATTCAGACAGTGGTAATTACACGTGCCAC
CCGTACAATGTGATGGGCTTTGGTGATAATGCAACGCTTGCGTTGGAAGT
AACAGCGCAACCGATCCTCGATAATTACACAAGTCCTGTCTACGGTATCA
AACCTCAATCATCAAGTCTAACTTGCACCTTCTATGGGAATCCAGCGCCT
GAAATCACTTGGACAAAACTGGATGGTGGTGTGTTATACGATAACATCAC
AACAGAGACTATCGATAAATGTGTAGGGACCATCGTCTTCAAAACATCAA
CGGTTACTTTCAATCCAACTGAATTAGAACATTATGGAACGTACGAATGT
TCCGCTGATAATACCGGAAAACCCGCCCCAGACCTTTTCTGGTATTTTGA
AGATGATTGGACAACAGCGTTGACAAACACAAGTGATTACCTCATCACTG
ACTGGAGTACGGACACGGTTGGCAATGAAACCATTGTGACGTCAGATTTG
ACGATCACGAGTGCGGGTCATCAAGATGTCGGCAATTATTCTTGTGGAGC
TAAAAACAAACTGACTGAAAAGAGAATTTACAGAAGAGTTGATGTCTATT
ACGCTCCGAGAAACACAACATTGAATGCTACAGTGAACCCGGTTCATCTT
CTTTCCACCACGCTTCTTCAATGTGATACTGATGCATCCACTGAACCCAT
GTATTACCTCATCTACAAAGATGGTAGCTTGGTTGCCAACGTTACAGATG
GGATATACAATATTTCATCTGTGGTGTATTCAGACAGTGGTAATTACACG
TGCCACCCGTACAATGTGATGGGCTTTGGTGATAATGCAACGCTTGCGTT
GGAAGTAACAGCGCAACCGATCCTCGATAATTACACAAGTCCTGTCTACG
GTATCAAACCTCAATCATCAAGTCTAACTTGCACCTTCTATGGGAATCCA
GCGCCTGAAATCACTTGGACAAAACTGGATGGTGGTGTGTTATACGATAA
CATCACAACAGAGACTATCGATAAATGTGTAGGGACCATCGTCTTCAAAA
CATCAACGGTTACTTTCAATCCAACTGAATTAGAACATTATGGAACGTAC
GAATGTTCCGCTGATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021485XLOC_021485Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036453-proteinTCONS_00036453-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036453-exon-sc0001463-1491911889:6071..6308TCONS_00036453-exon-sc0001463-1491911889:6071..6308Clytia hemisphaericaexon
TCONS_00036453-exon-sc0001463-1510915933:6071..6308TCONS_00036453-exon-sc0001463-1510915933:6071..6308Clytia hemisphaericaexon
TCONS_00036453-exon-sc0001463-1575043694:6071..6308TCONS_00036453-exon-sc0001463-1575043694:6071..6308Clytia hemisphaericaexon
TCONS_00036453-exon-sc0001463-1491911889:7045..7305TCONS_00036453-exon-sc0001463-1491911889:7045..7305Clytia hemisphaericaexon
TCONS_00036453-exon-sc0001463-1510915933:7045..7305TCONS_00036453-exon-sc0001463-1510915933:7045..7305Clytia hemisphaericaexon
TCONS_00036453-exon-sc0001463-1575043694:7045..7305TCONS_00036453-exon-sc0001463-1575043694:7045..7305Clytia hemisphaericaexon
TCONS_00036453-exon-sc0001463-1491911889:7740..7996TCONS_00036453-exon-sc0001463-1491911889:7740..7996Clytia hemisphaericaexon
TCONS_00036453-exon-sc0001463-1510915933:7740..7996TCONS_00036453-exon-sc0001463-1510915933:7740..7996Clytia hemisphaericaexon
TCONS_00036453-exon-sc0001463-1575043694:7740..7996TCONS_00036453-exon-sc0001463-1575043694:7740..7996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001463supercontigsc0001463:6071..7996 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.09021	0	0	0	0.172916	0	0	0.139859	0.37115	0.566814	0	1.69523	1.57271	0	0	0	0	0	0	0	0	0	0	0.268074	0.376828	0.135198	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003598Ig_sub2
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036453 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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