TCONS_00036445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036445
Unique NameTCONS_00036445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036445 ID=TCONS_00036445|Name=TCONS_00036445|organism=Clytia hemisphaerica|type=transcript|length=319bp
CTAAACAGGCTGTTGCTAAAAGTAACAGTACCCCTCCCGTTAATAAGCCA
CCTGTCAACCAAATGCCTATGTCAACTGGTACCCATCAAGACGCCCCTAA
GGCACCCACACAAGGCCCTCCCGGCTTGTCGTTAGCTGCTGGATCCGCCC
CGACGCCCACCTCAAACGCCCCGAAAGCTTCGTATAGTAGTCGACTAAGC
ACGACGAACAAGACGGCGGCGGTTGAACACACGCGCATGGAGCAGATGCC
AAGCACGACGCCAAGAGGACAGGGCGAAGTCATCAAGTTCGGAAAAATCA
ATAAGATTAATGAGGATGG
Run BLAST on NCBI

protein sequence of TCONS_00036445-protein

>TCONS_00036445-protein ID=TCONS_00036445-protein|Name=TCONS_00036445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
KQAVAKSNSTPPVNKPPVNQMPMSTGTHQDAPKAPTQGPPGLSLAAGSAP
TPTSNAPKASYSSRLSTTNKTAAVEHTRMEQMPSTTPRGQGEVIKFGKIN
KINED
Run BLAST on NCBI

transcript from alignment at sc0001460:54956..55274

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036445 ID=TCONS_00036445|Name=TCONS_00036445|organism=Clytia hemisphaerica|type=transcript|length=319bp|location=Sequence derived from alignment at sc0001460:54956..55274 (Clytia hemisphaerica)
CCATCCTCATTAATCTTATTGATTTTTCCGAACTTGATGACTTCGCCCTG
TCCTCTTGGCGTCGTGCTTGGCATCTGCTCCATGCGCGTGTGTTCAACCG
CCGCCGTCTTGTTCGTCGTGCTTAGTCGACTACTATACGAAGCTTTCGGG
GCGTTTGAGGTGGGCGTCGGGGCGGATCCAGCAGCTAACGACAAGCCGGG
AGGGCCTTGTGTGGGTGCCTTAGGGGCGTCTTGATGGGTACCAGTTGACA
TAGGCATTTGGTTGACAGGTGGCTTATTAACGGGAGGGGTACTGTTACTT
TTAGCAACAGCCTGTTTAG

Coding sequence (CDS) from alignment at sc0001460:54956..55274

>TCONS_00036445 ID=TCONS_00036445|Name=TCONS_00036445|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0001460:54956..55274 (Clytia hemisphaerica)
ATCCTCATTAATCTTATTGATTTTTCCGAACTTGATGACTTCGCCCTGTC
CTCTTGGCGTCGTGCTTGGCATCTGCTCCATGCGCGTGTGTTCAACCGCC
GCCGTCTTGTTCGTCGTGCTTAGTCGACTACTATACGAAGCTTTCGGGGC
GTTTGAGGTGGGCGTCGGGGCGGATCCAGCAGCTAACGACAAGCCGGGAG
GGCCTTGTGTGGGTGCCTTAGGGGCGTCTTGATGGGTACCAGTTGACATA
GGCATTTGGTTGACAGGTGGCTTATTAACGGGAGGGGTACTGTTACTTTT
AGCAACAGCCTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021482XLOC_021482Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036445-proteinTCONS_00036445-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036445-exon-sc0001460-1491911889:54956..55274TCONS_00036445-exon-sc0001460-1491911889:54956..55274Clytia hemisphaericaexon
TCONS_00036445-exon-sc0001460-1510915933:54956..55274TCONS_00036445-exon-sc0001460-1510915933:54956..55274Clytia hemisphaericaexon
TCONS_00036445-exon-sc0001460-1575043694:54956..55274TCONS_00036445-exon-sc0001460-1575043694:54956..55274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001460supercontigsc0001460:54956..55274 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.5627	40.13	40.5792	48.9988	32.1468	30.3026	32.8531	45.8863	30.4571	51.8852	23.4409	19.489	27.7061	27.5041	21.2376	27.3585	49.8664	40.1789	16.4189	16.6922	27.7777	30.6908	36.0828	32.0664	41.1081	46.0578	39.3948	26.9662	39.4685	37.2775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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