TCONS_00036444 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036444
Unique NameTCONS_00036444
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length210

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036444 ID=TCONS_00036444|Name=TCONS_00036444|organism=Clytia hemisphaerica|type=transcript|length=210bp
GCCAGAAAAAACTCTTCATTGGGCTTGGGTGATTTTTCCAGGGACCAGGG
GTATTAAGTGATGGGTATGTCcaagccaaaaattgaaaattgaccctGTG
AGAGACAGAATTTTGCAATTACCTGACACACCCAATTTACCTTTAAAGTA
ACAACCATCccagttcttgaaaaaattgcaaaaaacagTCATACCCAGGC
CCAGGGGTCG
Run BLAST on NCBI

transcript from alignment at sc0001460:40799..41008

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036444 ID=TCONS_00036444|Name=TCONS_00036444|organism=Clytia hemisphaerica|type=transcript|length=210bp|location=Sequence derived from alignment at sc0001460:40799..41008 (Clytia hemisphaerica)
CGACCCCTGGGCCTGGGTATGActgttttttgcaattttttcaagaactg
gGATGGTTGTTACTTTAAAGGTAAATTGGGTGTGTCAGGTAATTGCAAAA
TTCTGTCTCTCACagggtcaattttcaatttttggcttgGACATACCCAT
CACTTAATACCCCTGGTCCCTGGAAAAATCACCCAAGCCCAATGAAGAGT
TTTTTCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021481XLOC_021481Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036444-exon-sc0001460-1491911889:40799..41008TCONS_00036444-exon-sc0001460-1491911889:40799..41008Clytia hemisphaericaexon
TCONS_00036444-exon-sc0001460-1510915933:40799..41008TCONS_00036444-exon-sc0001460-1510915933:40799..41008Clytia hemisphaericaexon
TCONS_00036444-exon-sc0001460-1575043694:40799..41008TCONS_00036444-exon-sc0001460-1575043694:40799..41008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001460supercontigsc0001460:40799..41008 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.441	0	0	0	33.0356	35.3187	12.9684	12.1409	3.64291	6.01644	5.83971	2.87909	2.87509	1.99054	1.6365	1.75621	2.16351	0	3.06363	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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