TCONS_00036436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036436
Unique NameTCONS_00036436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036436 ID=TCONS_00036436|Name=TCONS_00036436|organism=Clytia hemisphaerica|type=transcript|length=820bp
tgggaagctgcaagaataaagccagacaatctcaatcgaacggaatcgac
gatcgaaccagtcaaacaacaatcgaaccaatcgaatattatccagaatt
ttgacgttcgattgagattcaattgcgttcgacaatcgaatttcaatcgg
ttgattgcgttcgatttggttcgactggttcgaccatcgattccgtttga
ttgagatcgtctggaactAACCAATACGTCAACCAACCAATTTGTCGACC
TATTGATCCATCAACCTAACGAAGATCAATCGACCTACAACAATGATCTC
CATATCATAATGACCAATCCATATCATCCTGCTAACTAGCGCACCAGCAC
TAGCTAAAGCTGATCCATATTATTATATCAGATGTCCAGATGATTATATA
CCCACTGATTGATGATCCTTCTgtaatgaaatttgaaaaaaataaaacaa
acaaacctttttcttgCTTATTAGAATCCATAACGAGATAACTAGCAATG
TGTGTTTGTCAATTTGGATATAAGAGCACAGTCGATTGGCACTGAATGAA
GTATGAGCAGAATACAGGGGAATCTTACGCAACTAGGATACCATTATTAA
AGCGCAAACTAAATGAGGAGGAGTGAGCGCAAGGCGGCGGACACGGCACT
TAAAAATCGCGGATAATCATTGATTTAAGACTCTTGCGAAATTAATGATT
ATCGTTGATTTAACGGTGATAACGGGTTgagttataatgtatgttgattc
agcagattgaaataaatagaatcttttgtaatgaataaagaaaaatgtgg
agcaagatttttttcttcct
Run BLAST on NCBI

transcript from alignment at sc0001459:43480..44299

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036436 ID=TCONS_00036436|Name=TCONS_00036436|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at sc0001459:43480..44299 (Clytia hemisphaerica)
aggaagaaaaaaatcttgctccacatttttctttattcattacaaaagat
tctatttatttcaatctgctgaatcaacatacattataactcAACCCGTT
ATCACCGTTAAATCAACGATAATCATTAATTTCGCAAGAGTCTTAAATCA
ATGATTATCCGCGATTTTTAAGTGCCGTGTCCGCCGCCTTGCGCTCACTC
CTCCTCATTTAGTTTGCGCTTTAATAATGGTATCCTAGTTGCGTAAGATT
CCCCTGTATTCTGCTCATACTTCATTCAGTGCCAATCGACTGTGCTCTTA
TATCCAAATTGACAAACACACATTGCTAGTTATCTCGTTATGGATTCTAA
TAAGcaagaaaaaggtttgtttgttttatttttttcaaatttcattacAG
AAGGATCATCAATCAGTGGGTATATAATCATCTGGACATCTGATATAATA
ATATGGATCAGCTTTAGCTAGTGCTGGTGCGCTAGTTAGCAGGATGATAT
GGATTGGTCATTATGATATGGAGATCATTGTTGTAGGTCGATTGATCTTC
GTTAGGTTGATGGATCAATAGGTCGACAAATTGGTTGGTTGACGTATTGG
TTagttccagacgatctcaatcaaacggaatcgatggtcgaaccagtcga
accaaatcgaacgcaatcaaccgattgaaattcgattgtcgaacgcaatt
gaatctcaatcgaacgtcaaaattctggataatattcgattggttcgatt
gttgtttgactggttcgatcgtcgattccgttcgattgagattgtctggc
tttattcttgcagcttccca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021473XLOC_021473Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036436-exon-sc0001459-1491911889:43480..44299TCONS_00036436-exon-sc0001459-1491911889:43480..44299Clytia hemisphaericaexon
TCONS_00036436-exon-sc0001459-1510915933:43480..44299TCONS_00036436-exon-sc0001459-1510915933:43480..44299Clytia hemisphaericaexon
TCONS_00036436-exon-sc0001459-1575043694:43480..44299TCONS_00036436-exon-sc0001459-1575043694:43480..44299Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001459supercontigsc0001459:43480..44299 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.12247	1.37712	2.37848	3.47675	1.49755	1.69182	3.69954	3.5652	3.61121	2.73389	5.07777	4.31682	3.91945	5.19048	3.39998	4.35479	5.76991	6.21586	5.95433	5.06187	7.55526	8.54148	2.14968	2.61223	1.33374	1.72945	6.4957	4.33762	5.75257	4.31218
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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