TCONS_00036434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036434
Unique NameTCONS_00036434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036434 ID=TCONS_00036434|Name=TCONS_00036434|organism=Clytia hemisphaerica|type=transcript|length=735bp
CGATAAGACAAGTATTatgttgcaaaatttgaaatactgtttttttatat
ttatgccTTAATTCTTAGGTTGTTTGGAGTGGTGAATGGTTAGAAGGTAC
CGGACGTTCAACAGGAGAGGAAAGAGCAATTGTTCAGTTATCTTTCTCGG
TTTGGAAATAGTACAAAGTATCAATTACCTGAAAgaAGAGAAGAAACACT
AACAGAAGCAGTTCTTCACTGGAAcaaatccaaaatcaaaaaacttgTAC
CAGATTTGGTCAAGAGATATTACGAGaataaagaaaatttaaaaatgatt
ggTGACTTGCCAGACAAACATCCAACTAAAATCATAATGCAATGGAACga
tgaaattcaaaaagaagCATTAGGTTTGAGAAGTAGAGTGGTTCGTTAAC
CTTCCGACGCTGAAAAGCTTCTTCTTCTGGTGGAAAAGCTTCACCTTCCA
CCTGACTATCACATAGTTGCTAGCAGATTATCATTCCCCAAGACAATGGA
TTATGGTAAAGTCTATCGGTTGTTAGAGTTTGATAAGCAGGATCAATTAC
AAGAACTTGATTGACTTACCAAAGAGATTAAAGTCGAAGATTTACTGGTG
cgacttctttatttttgttttattaattgATGCTTAAGGGAGGATTGAAT
TAGGGCTGTTAGTCAAATAGGGGGTCAAATTGCTAATTAGCTTGATTTGA
AGAAAACTAAGATTTGAGCTCTTTTTCTGAAGAAG
Run BLAST on NCBI

transcript from alignment at sc0001459:61829..63455-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036434 ID=TCONS_00036434|Name=TCONS_00036434|organism=Clytia hemisphaerica|type=transcript|length=1627bp|location=Sequence derived from alignment at sc0001459:61829..63455- (Clytia hemisphaerica)
CGATAAGACAAGTATTATGTTGCAAAATTTGAAATACTGTTTTTTTATAT
TTATGCCTTAATTCTTAGGTTGTTTGGAGTGGTGAATGGTTAGAAGGTAC
CGGACGTTCAACAGGAGAGGAAAGAGCAATTGTTCAGTTATCTTTCTCGG
TTTGGAAATAGTACAAAGTATCAATTACCTGAAAGTAAATATTGTTCATT
AAGTCAAATATATTTAATTCAAGTACGTTTCTCCCTTNNNNNNNNNNNNN
NNNNNNNNNNNTCGGTTTGGAAATAGTACAAAGTATCAATTACCTGAAAG
TAAATATTGTTCATTAAGTCAAATATATTTAATTCAAGTACGTTTCTCCC
TTATGTCACTAATACAGTTGTTCTTTTCCTTTATTTATTTCTGATTTAAA
ATTTTTCAGGAAGAGAAGAAACACTAACAGAAGCAGTTCTTCACTGGAAC
AAATCCAAAATCAAAAAACTTGTACCAGATTTGGTCAAGAGATATTACGA
GGTAACAAGATACGGTAATTTGCTACGTTGAAAGGTTTTTGGATGACATG
ATACTTCATGTGAGAGATGATTGAGCGTATTTATTTGTACGTCAATTGCC
AGAAGGACTCAGTCTTTTCCTAATCTATAATTTNTGTACCAGATTTGGTC
AAGAGATATTACAAGGTAACAAGATACGGTAATTTGCTACGTTGAAAGGT
TTTTGCATGACATGATACTTCATGTAAGAGATGATTGAGCGTATTTATTT
GTACGTCAATTACCAGAAGGACTCAGTCTTTTCCTAATCTATAATTTCTT
TGGTTTTAGAATAAAGAAAATTTAAAAATGATTGGTGACTTGCCAGACAA
ACATCCAACTAAAATCATAATGCAATGGAACGATGAAATTCAAAAAGAAG
CATTAGGTAACAGTGTTGATATTAACATTTGGCGCGTTGTCCTCAATTGA
AGACCTTTGCTCAATATGTATTATATATCAGTATAAATTATAAAAATCGC
TACAAATGTACCGTCCAAGCAGTTAGTCCAAAACACCATGCCCGTTAGTA
CATCTTTTGCAGTTTCTACTGGTTTTTACAGGCTTTCACTGCACTTGGCT
TCACTCTGCTTTACTTCTACCNGTACTGTCCAAGCAGTTAGTCCAAAACA
CCATGCCCGTTAGTACATCTTTTGCAGTTTCTACTGGTTTTTACAGGCTT
TCACTGCACTTGGCTTCACTCTGCTTTATTTCTACCTTTTGCTCTTTTGT
TGTAACTTTTTCTAGGTTTGAGAAGTAGAGTGGTTCGTTAACCTTCCGAC
GCTGAAAAGCTTCTTCTTCTGGTGGAAAAGCTTCACCTTCCACCTGACTA
TCACATAGTTGCTAGCAGATTATCATTCCCCAAGACAATGGATTATGGTA
AAGTCTATCGGTTGTTAGAGTTTGATAAGCAGGATCAATTACAAGAACTT
GATTGACTTACCAAAGAGATTAAAGTCGAAGATTTACTGGTGCGACTTCT
TTATTTTTGTTTTATTAATTGATGCTTAAGGGAGGATTGAATTAGGGCTG
TTAGTCAAATAGGGGGTCAAATTGCTAATTAGCTTGATTTGAAGAAAACT
AAGATTTGAGCTCTTTTTCTGAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021471XLOC_021471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036434-exon-sc0001459-1575043694:63272..63455TCONS_00036434-exon-sc0001459-1575043694:63272..63455Clytia hemisphaericaexon
TCONS_00036434-exon-sc0001459-1575043694:62955..63046TCONS_00036434-exon-sc0001459-1575043694:62955..63046Clytia hemisphaericaexon
TCONS_00036434-exon-sc0001459-1575043694:62550..62646TCONS_00036434-exon-sc0001459-1575043694:62550..62646Clytia hemisphaericaexon
TCONS_00036434-exon-sc0001459-1575043694:61829..62190TCONS_00036434-exon-sc0001459-1575043694:61829..62190Clytia hemisphaericaexon
TCONS_00036434-exon-sc0001459-1510915933:63272..63455TCONS_00036434-exon-sc0001459-1510915933:63272..63455Clytia hemisphaericaexon
TCONS_00036434-exon-sc0001459-1510915933:62955..63046TCONS_00036434-exon-sc0001459-1510915933:62955..63046Clytia hemisphaericaexon
TCONS_00036434-exon-sc0001459-1510915933:62550..62646TCONS_00036434-exon-sc0001459-1510915933:62550..62646Clytia hemisphaericaexon
TCONS_00036434-exon-sc0001459-1510915933:61829..62190TCONS_00036434-exon-sc0001459-1510915933:61829..62190Clytia hemisphaericaexon
TCONS_00036434-exon-sc0001459-1491911889:63272..63455TCONS_00036434-exon-sc0001459-1491911889:63272..63455Clytia hemisphaericaexon
TCONS_00036434-exon-sc0001459-1491911889:62955..63046TCONS_00036434-exon-sc0001459-1491911889:62955..63046Clytia hemisphaericaexon
TCONS_00036434-exon-sc0001459-1491911889:62550..62646TCONS_00036434-exon-sc0001459-1491911889:62550..62646Clytia hemisphaericaexon
TCONS_00036434-exon-sc0001459-1491911889:61829..62190TCONS_00036434-exon-sc0001459-1491911889:61829..62190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001459supercontigsc0001459:61829..63455 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.54931	8.33256	2.17751	1.65372	33.4866	26.6029	29.8122	32.0101	28.3583	42.0383	31.5472	21.1832	25.3104	26.6297	19.9555	24.4092	25.5382	30.7611	25.7323	32.0779	28.0845	18.2912	15.178	18.49	22.5352	31.739	43.8387	32.3284	30.4917	35.5305
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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