TCONS_00036431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036431
Unique NameTCONS_00036431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036431 ID=TCONS_00036431|Name=TCONS_00036431|organism=Clytia hemisphaerica|type=transcript|length=750bp
GTTTGGAAATAGTACAAAGTATCAATTACCTGAAAgaAGAGAAGAAACAC
TAACAGAAGCAGTTCTTCACTGGAAcaaatccaaaatcaaaaaacttgTA
CCAGATTTGGTCAAGAGATATTACGAGGTAACAAGATACGGTAATTTGCT
ACGTTGAAAGGTTTTTGGATGACATGATACTTCATGTGAGAGATGATTGA
GCGTATTTATTTGTACGTCAATTGCCAGAAGGACTCAGTCTTTTCCTAAT
CTATAATTTNTGTACCAGATTTGGTCAAGAGATATTACAAGaataaagaa
aatttaaaaatgattggTGACTTGCCAGACAAACATCCAACTAAAATCAT
AATGCAATGGAACgatgaaattcaaaaagaagCATTAGGTTTGAGAAGTA
GAGTGGTTCGTTAACCTTCCGACGCTGAAAAGCTTCTTCTTCTGGTGGAA
AAGCTTCACCTTCCACCTGACTATCACATAGTTGCTAGCAGATTATCATT
CCCCAAGACAATGGATTATGGTAAAGTCTATCGGTTGTTAGAGTTTGATA
AGCAGGATCAATTACAAGAACTTGATTGACTTACCAAAGAGATTAAAGTC
GAAGATTTACTGGTGcgacttctttatttttgttttattaattgATGCTT
AAGGGAGGATTGAATTAGGGCTGTTAGTCAAATAGGGGGTCAAATTGCTA
ATTAGCTTGATTTGAAGAAAACTAAGATTTGAGCTCTTTTTCTGAAGAAG
Run BLAST on NCBI

transcript from alignment at sc0001459:61829..63191-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036431 ID=TCONS_00036431|Name=TCONS_00036431|organism=Clytia hemisphaerica|type=transcript|length=1363bp|location=Sequence derived from alignment at sc0001459:61829..63191- (Clytia hemisphaerica)
GTTTGGAAATAGTACAAAGTATCAATTACCTGAAAGTAAATATTGTTCAT
TAAGTCAAATATATTTAATTCAAGTACGTTTCTCCCTTATGTCACTAATA
CAGTTGTTCTTTTCCTTTATTTATTTCTGATTTAAAATTTTTCAGGAAGA
GAAGAAACACTAACAGAAGCAGTTCTTCACTGGAACAAATCCAAAATCAA
AAAACTTGTACCAGATTTGGTCAAGAGATATTACGAGGTAACAAGATACG
GTAATTTGCTACGTTGAAAGGTTTTTGGATGACATGATACTTCATGTGAG
AGATGATTGAGCGTATTTATTTGTACGTCAATTGCCAGAAGGACTCAGTC
TTTTCCTAATCTATAATTTNTGTACCAGATTTGGTCAAGAGATATTACAA
GGTAACAAGATACGGTAATTTGCTACGTTGAAAGGTTTTTGCATGACATG
ATACTTCATGTAAGAGATGATTGAGCGTATTTATTTGTACGTCAATTACC
AGAAGGACTCAGTCTTTTCCTAATCTATAATTTCTTTGGTTTTAGAATAA
AGAAAATTTAAAAATGATTGGTGACTTGCCAGACAAACATCCAACTAAAA
TCATAATGCAATGGAACGATGAAATTCAAAAAGAAGCATTAGGTAACAGT
GTTGATATTAACATTTGGCGCGTTGTCCTCAATTGAAGACCTTTGCTCAA
TATGTATTATATATCAGTATAAATTATAAAAATCGCTACAAATGTACCGT
CCAAGCAGTTAGTCCAAAACACCATGCCCGTTAGTACATCTTTTGCAGTT
TCTACTGGTTTTTACAGGCTTTCACTGCACTTGGCTTCACTCTGCTTTAC
TTCTACCNGTACTGTCCAAGCAGTTAGTCCAAAACACCATGCCCGTTAGT
ACATCTTTTGCAGTTTCTACTGGTTTTTACAGGCTTTCACTGCACTTGGC
TTCACTCTGCTTTATTTCTACCTTTTGCTCTTTTGTTGTAACTTTTTCTA
GGTTTGAGAAGTAGAGTGGTTCGTTAACCTTCCGACGCTGAAAAGCTTCT
TCTTCTGGTGGAAAAGCTTCACCTTCCACCTGACTATCACATAGTTGCTA
GCAGATTATCATTCCCCAAGACAATGGATTATGGTAAAGTCTATCGGTTG
TTAGAGTTTGATAAGCAGGATCAATTACAAGAACTTGATTGACTTACCAA
AGAGATTAAAGTCGAAGATTTACTGGTGCGACTTCTTTATTTTTGTTTTA
TTAATTGATGCTTAAGGGAGGATTGAATTAGGGCTGTTAGTCAAATAGGG
GGTCAAATTGCTAATTAGCTTGATTTGAAGAAAACTAAGATTTGAGCTCT
TTTTCTGAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021471XLOC_021471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036431-exon-sc0001459-1575043694:63157..63191TCONS_00036431-exon-sc0001459-1575043694:63157..63191Clytia hemisphaericaexon
TCONS_00036431-exon-sc0001459-1575043694:62791..63046TCONS_00036431-exon-sc0001459-1575043694:62791..63046Clytia hemisphaericaexon
TCONS_00036431-exon-sc0001459-1575043694:62550..62646TCONS_00036431-exon-sc0001459-1575043694:62550..62646Clytia hemisphaericaexon
TCONS_00036431-exon-sc0001459-1575043694:61829..62190TCONS_00036431-exon-sc0001459-1575043694:61829..62190Clytia hemisphaericaexon
TCONS_00036431-exon-sc0001459-1510915933:63157..63191TCONS_00036431-exon-sc0001459-1510915933:63157..63191Clytia hemisphaericaexon
TCONS_00036431-exon-sc0001459-1510915933:62791..63046TCONS_00036431-exon-sc0001459-1510915933:62791..63046Clytia hemisphaericaexon
TCONS_00036431-exon-sc0001459-1510915933:62550..62646TCONS_00036431-exon-sc0001459-1510915933:62550..62646Clytia hemisphaericaexon
TCONS_00036431-exon-sc0001459-1510915933:61829..62190TCONS_00036431-exon-sc0001459-1510915933:61829..62190Clytia hemisphaericaexon
TCONS_00036431-exon-sc0001459-1491911889:63157..63191TCONS_00036431-exon-sc0001459-1491911889:63157..63191Clytia hemisphaericaexon
TCONS_00036431-exon-sc0001459-1491911889:62791..63046TCONS_00036431-exon-sc0001459-1491911889:62791..63046Clytia hemisphaericaexon
TCONS_00036431-exon-sc0001459-1491911889:62550..62646TCONS_00036431-exon-sc0001459-1491911889:62550..62646Clytia hemisphaericaexon
TCONS_00036431-exon-sc0001459-1491911889:61829..62190TCONS_00036431-exon-sc0001459-1491911889:61829..62190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001459supercontigsc0001459:61829..63191 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.877074	2.00241	6.8698e-07	0.498771	49.0068	31.1574	35.1221	33.0355	11.589	25.3378	15.5652	3.78427	12.3083	13.3117	10.4719	9.84244	9.38751	13.2369	13.0433	15.5954	8.09279	3.2531	5.38443	6.20071	27.3244	34.5986	18.4511	10.4722	11.7407	11.4325
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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