TCONS_00036427 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00036427
Unique Name	TCONS_00036427
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	581

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001459:8196..10906-
coding sequence from alignment at sc0001459:8196..10906-

transcript sequence

>TCONS_00036427 ID=TCONS_00036427|Name=TCONS_00036427|organism=Clytia hemisphaerica|type=transcript|length=581bp
TCGGAAGAGTTCAGCGCAGCACGATTTCTGTTGGAAAGACATCTCGACAC
TGGGTTCGACGCATTGAAGAGTGGTTATTATCATTTACAATCAAAAGACA
CAAGGAAGTCAGTTGGCCCTACAAGCTTTGTTCGTGGTCatttgtctacc
attttagaaGCTCTTCACACACTAAATGAAGTGAGTGAGATGCATACAGT
CAACGAGAGTGAATCTAATGGAGGAAATATTTGTGAAGAGTTACAAGGTG
TTCTCAAgaGTTGCGATTTTGTCTCACACAGtcttttcaaagatatttta
caACGGAAAGATGATTGCGATGCGAAGAGGAATGTTCTCAACGTTTTACA
TCGTTATCGCTTTCTTTTCAACTTGCCAAGGAGTATCGAGAAAAGCATTC
AACAGcgaGAATATGAAATTCTGATCAGCGATTACAATCGTGCCAAAGCT
TTGTTTCAAAACACGGAAGTCACTTCattcaaaaaagCTCTGGCAGAAGT
AGATCAAAAGATTTCTGCATTTTCCACACAGTTGAAACAAAAACTGTTTG
ATTTCCCTACACCTCTTGAAGAGCAAAAGAA

Run BLAST on NCBI

protein sequence of TCONS_00036427-protein

>TCONS_00036427-protein ID=TCONS_00036427-protein|Name=TCONS_00036427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
SEEFSAARFLLERHLDTGFDALKSGYYHLQSKDTRKSVGPTSFVRGHLST
ILEALHTLNEVSEMHTVNESESNGGNICEELQGVLKSCDFVSHSLFKDIL
QRKDDCDAKRNVLNVLHRYRFLFNLPRSIEKSIQQREYEILISDYNRAKA
LFQNTEVTSFKKALAEVDQKISAFSTQLKQKLFDFPTPLEEQK

Run BLAST on NCBI

transcript from alignment at sc0001459:8196..10906-

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00036427 ID=TCONS_00036427|Name=TCONS_00036427|organism=Clytia hemisphaerica|type=transcript|length=2711bp|location=Sequence derived from alignment at sc0001459:8196..10906- (Clytia hemisphaerica)
TCGGAAGAGTTCAGCGCAGCACGATTTCTGTTGGAAAGACATCTCGACAC
TGGGTATGTTGTAAAAGTTTCTTAACTTTTCGGACCTACGTATTCGTTCG
TCTGTTACTTCGTGCCTAGCAGTAACCTTTTTTACGTAGTAACATCTACT
TTTTCGAATGTTTGGAGCCCAGGTTTTCGAACTCCAAACATTAGACACTT
GACGTCACTTAAAACTTTGAAGCCATTACAGTAGCGAACAAAATTGAATT
TGCGACAAAATACTTGAAAGGCTTCTATTTTCCGAAAATCATGAATGTGT
AACTCGCCAAGAAACTGAATAAATAGCTCCGGCTTTTCCGCGGTCTCTAT
ATCTGATATTCTGATATCAGTCAATTGATGACGGAAAGGTTTAAGTTTTT
TCCCTCTTTAAAGCTTATAGTGTCATGGGTTTAAAACTATCACGATCTGA
TCATTGTCTCACTTGATCCTTACAGGTTCGACGCATTGAAGAGTGGTTAT
TATCATTTACAATCAAAAGACACAAGGAAGTCAGTTGGCCCTACAAGCTT
TGTTCGTGGTCATTTGTCTACCATTTTAGAAGCTCTTCACACACTAAATG
GTACGTCTGAATATCAAATGTTACCGATTACGGGTCAGGTACAAAGGTTA
ATGTATCCGAAATATTAATCGTTGGTATCCTTTAAGTGAAACAAACTTAT
GTACTTCCTAATCGTTTTTGTTATCCAAACGGGCGGGGTTCGATGACCAT
GACTTTTGATACAGAAACTTTTGCTTGCCTTTTTATTGCATTTTTGAAAT
CTACGTGAGATTTTTTGAAGGCATTCGAAGCTATATTAAGGTAATATGTA
CCTCTGAAAGTCAAACTTTCGATAAATTCCAAGAGGTCAAATTTTCGATT
TCTGAAACAAAGTAAAGTTTATTCTAGAATAGTCCAATATAATCACAGTC
ACAAACAACGATTGCAAAATTTTTTTTTTATTTCACACATTTTGTAGAAG
TGAGTGAGATGCATACAGTCAACGAGAGTGAATCTAATGGAGGAAATATT
TGTGAAGAGTTACAAGGTGTTCTCAAGAGTAAGTTTTATTTTTTATTTCG
CCTCTAAAAATTAGTTCGAATTATAAAAGAAATGGAATGATAGAATGTCA
AATTGGTGGGAATCCACTATAGGGAGAGGTTTGCGTTTTACATTCTTTCA
ACCTCTCTAGGTTTTTAATACTTCAAATTTACTTTAAATTTTTGGATTTA
ACAGATACGATTTAGGAGGAACTCAAGCTCTCTAAACTCTAAAGTTAAAT
ATAATTTAACTTTCTCCCCTTTCGGTGCCGCGATAGCAAAAATTGTTAAA
AATTATTTTGTTTATTCTACTATACCATTAAAAAGAATATTTTTAAATTT
TCGCGTTTCTTATCAATTTGACAGGTTGCGATTTTGTCTCACACAGTCTT
TTCAAAGATATTTTACAACGGAAAGATGATTGCGATGCGAAGAGGAATGT
TCTCAACGTTTTACATCGTTATCGCTTTCTTTTCAACTTGCCAAGGAGTA
TCGAGAAAAGCATTCAACAGGTGAGTGTTCATTCCCCAAAAAATATTTGA
GGGGCTTAACTTCACATTACATAATACACAATCTCTTATTCTTACCGTGC
CAAGGCTTAATCTTGTTGCTTGCTGGTTTTGTGAACTTGGTGAAATCTAT
TGAATAGCGAATATCTATCTAGATCCGTCCTTCCCAAGACTCTTCAGTGC
AGCTTGGGTAACCGAGCATAACTGCAGTTGTCCGTAGAGAGCTCAAAACA
GTAAGTGCTGAGTTTTGTAGCTTTGAGTAGCAGAGCCTGCTCCTCAACAT
AGTCTACATAGTACCTTATCGGGGAAAACTTCGTCGGGGAAAATTTTCGT
CGGGGAAAAAAATTCGTCACTTGGGCAAAATTTCGTCACTTTTCCCCGAC
GAAGTTTTCCCCGATAAGGTACTTACTTATTGCACGATTTAACGTCTGTG
GTTCCCAGCATCTGGGGTTGGACGCCTTCTTCTGATGATCGTACGCCATA
CTGCCAGATCGTTAGTCATATCGAGGACATAGTGAGGTTATTACTTAGGG
CAGCATTATATACTGGTAATAAATAAATGACTTGATGAATTTTTTATTTT
AGCGAGAATATGAAATTCTGATCAGCGATTACAATCGTGCCAAAGCTTTG
TTTCAAAACACGGAAGTCACTTCATTCAAAAAAGGTAAAATCTAATTGCA
TTTGATTGCTTTTGATTGTTTTTGATTACACTTACCATTTTTTGTTGTCT
TGCCAAATAGAAACGATTTTAGTAGTTGAATGTTGAACTCATAAAGGGCT
ACTTAGACTACACAATATATTAACGAACAATATTTGACAATATCGTTTTC
GGACCGTAATGTACGAAGTAAATAGCAGGTATTCTATTTATAAAAAGAAA
GTTTCTTTTTGTAAACAATCCCCCTAATATTGTTTGAAAATTGCAAATCG
AGCTGACAATATATTGCGGACACATTTTCAATACTCAGCCTGATAATATA
TTGTGTAGTGTATGTAGCCCTTAACAGTTAGCAACTATAGCATTTATATA
TTAACCTTTCCTTACAGCTCTGGCAGAAGTAGATCAAAAGATTTCTGCAT
TTTCCACACAGTTGAAACAAAAACTGTTTGATTTCCCTACACCTCTTGAA
GAGCAAAAGAA

Coding sequence (CDS) from alignment at sc0001459:8196..10906-

>TCONS_00036427 ID=TCONS_00036427|Name=TCONS_00036427|organism=Clytia hemisphaerica|type=CDS|length=3474bp|location=Sequence derived from alignment at sc0001459:8196..10906- (Clytia hemisphaerica)
CTCTGGCAGAAGTAGATCAAAAGATTTCTGCATTTTCCACACAGTTGAAA
CAAAAACTGTTTGATTTCCCTACACCTCTTGAAGAGCAAAAGCGAGAATA
TGAAATTCTGATCAGCGATTACAATCGTGCCAAAGCTTTGTTTCAAAACA
CGGAAGTCACTTCATTCAAAAAAGGTTGCGATTTTGTCTCACACAGTCTT
TTCAAAGATATTTTACAACGGAAAGATGATTGCGATGCGAAGAGGAATGT
TCTCAACGTTTTACATCGTTATCGCTTTCTTTTCAACTTGCCAAGGAGTA
TCGAGAAAAGCATTCAACAGAAGTGAGTGAGATGCATACAGTCAACGAGA
GTGAATCTAATGGAGGAAATATTTGTGAAGAGTTACAAGGTGTTCTCAAG
AGTTCGACGCATTGAAGAGTGGTTATTATCATTTACAATCAAAAGACACA
AGGAAGTCAGTTGGCCCTACAAGCTTTGTTCGTGGTCATTTGTCTACCAT
TTTAGAAGCTCTTCACACACTAAATGTCGGAAGAGTTCAGCGCAGCACGA
TTTCTGTTGGAAAGACATCTCGACACTGGCTCTGGCAGAAGTAGATCAAA
AGATTTCTGCATTTTCCACACAGTTGAAACAAAAACTGTTTGATTTCCCT
ACACCTCTTGAAGAGCAAAAGCGAGAATATGAAATTCTGATCAGCGATTA
CAATCGTGCCAAAGCTTTGTTTCAAAACACGGAAGTCACTTCATTCAAAA
AAGGTTGCGATTTTGTCTCACACAGTCTTTTCAAAGATATTTTACAACGG
AAAGATGATTGCGATGCGAAGAGGAATGTTCTCAACGTTTTACATCGTTA
TCGCTTTCTTTTCAACTTGCCAAGGAGTATCGAGAAAAGCATTCAACAGA
AGTGAGTGAGATGCATACAGTCAACGAGAGTGAATCTAATGGAGGAAATA
TTTGTGAAGAGTTACAAGGTGTTCTCAAGAGTTCGACGCATTGAAGAGTG
GTTATTATCATTTACAATCAAAAGACACAAGGAAGTCAGTTGGCCCTACA
AGCTTTGTTCGTGGTCATTTGTCTACCATTTTAGAAGCTCTTCACACACT
AAATGTCGGAAGAGTTCAGCGCAGCACGATTTCTGTTGGAAAGACATCTC
GACACTGGCTCTGGCAGAAGTAGATCAAAAGATTTCTGCATTTTCCACAC
AGTTGAAACAAAAACTGTTTGATTTCCCTACACCTCTTGAAGAGCAAAAG
CGAGAATATGAAATTCTGATCAGCGATTACAATCGTGCCAAAGCTTTGTT
TCAAAACACGGAAGTCACTTCATTCAAAAAAGGTTGCGATTTTGTCTCAC
ACAGTCTTTTCAAAGATATTTTACAACGGAAAGATGATTGCGATGCGAAG
AGGAATGTTCTCAACGTTTTACATCGTTATCGCTTTCTTTTCAACTTGCC
AAGGAGTATCGAGAAAAGCATTCAACAGAAGTGAGTGAGATGCATACAGT
CAACGAGAGTGAATCTAATGGAGGAAATATTTGTGAAGAGTTACAAGGTG
TTCTCAAGAGTTCGACGCATTGAAGAGTGGTTATTATCATTTACAATCAA
AAGACACAAGGAAGTCAGTTGGCCCTACAAGCTTTGTTCGTGGTCATTTG
TCTACCATTTTAGAAGCTCTTCACACACTAAATGTCGGAAGAGTTCAGCG
CAGCACGATTTCTGTTGGAAAGACATCTCGACACTGGCTCTGGCAGAAGT
AGATCAAAAGATTTCTGCATTTTCCACACAGTTGAAACAAAAACTGTTTG
ATTTCCCTACACCTCTTGAAGAGCAAAAGCGAGAATATGAAATTCTGATC
AGCGATTACAATCGTGCCAAAGCTTTGTTTCAAAACACGGAAGTCACTTC
ATTCAAAAAAGGTTGCGATTTTGTCTCACACAGTCTTTTCAAAGATATTT
TACAACGGAAAGATGATTGCGATGCGAAGAGGAATGTTCTCAACGTTTTA
CATCGTTATCGCTTTCTTTTCAACTTGCCAAGGAGTATCGAGAAAAGCAT
TCAACAGAAGTGAGTGAGATGCATACAGTCAACGAGAGTGAATCTAATGG
AGGAAATATTTGTGAAGAGTTACAAGGTGTTCTCAAGAGTTCGACGCATT
GAAGAGTGGTTATTATCATTTACAATCAAAAGACACAAGGAAGTCAGTTG
GCCCTACAAGCTTTGTTCGTGGTCATTTGTCTACCATTTTAGAAGCTCTT
CACACACTAAATGTCGGAAGAGTTCAGCGCAGCACGATTTCTGTTGGAAA
GACATCTCGACACTGGCTCTGGCAGAAGTAGATCAAAAGATTTCTGCATT
TTCCACACAGTTGAAACAAAAACTGTTTGATTTCCCTACACCTCTTGAAG
AGCAAAAGCGAGAATATGAAATTCTGATCAGCGATTACAATCGTGCCAAA
GCTTTGTTTCAAAACACGGAAGTCACTTCATTCAAAAAAGGTTGCGATTT
TGTCTCACACAGTCTTTTCAAAGATATTTTACAACGGAAAGATGATTGCG
ATGCGAAGAGGAATGTTCTCAACGTTTTACATCGTTATCGCTTTCTTTTC
AACTTGCCAAGGAGTATCGAGAAAAGCATTCAACAGAAGTGAGTGAGATG
CATACAGTCAACGAGAGTGAATCTAATGGAGGAAATATTTGTGAAGAGTT
ACAAGGTGTTCTCAAGAGTTCGACGCATTGAAGAGTGGTTATTATCATTT
ACAATCAAAAGACACAAGGAAGTCAGTTGGCCCTACAAGCTTTGTTCGTG
GTCATTTGTCTACCATTTTAGAAGCTCTTCACACACTAAATGTCGGAAGA
GTTCAGCGCAGCACGATTTCTGTTGGAAAGACATCTCGACACTGGCTCTG
GCAGAAGTAGATCAAAAGATTTCTGCATTTTCCACACAGTTGAAACAAAA
ACTGTTTGATTTCCCTACACCTCTTGAAGAGCAAAAGCGAGAATATGAAA
TTCTGATCAGCGATTACAATCGTGCCAAAGCTTTGTTTCAAAACACGGAA
GTCACTTCATTCAAAAAAGGTTGCGATTTTGTCTCACACAGTCTTTTCAA
AGATATTTTACAACGGAAAGATGATTGCGATGCGAAGAGGAATGTTCTCA
ACGTTTTACATCGTTATCGCTTTCTTTTCAACTTGCCAAGGAGTATCGAG
AAAAGCATTCAACAGAAGTGAGTGAGATGCATACAGTCAACGAGAGTGAA
TCTAATGGAGGAAATATTTGTGAAGAGTTACAAGGTGTTCTCAAGAGTTC
GACGCATTGAAGAGTGGTTATTATCATTTACAATCAAAAGACACAAGGAA
GTCAGTTGGCCCTACAAGCTTTGTTCGTGGTCATTTGTCTACCATTTTAG
AAGCTCTTCACACACTAAATGTCGGAAGAGTTCAGCGCAGCACGATTTCT
GTTGGAAAGACATCTCGACACTGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021468	XLOC_021468	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00036427-protein	TCONS_00036427-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001459	supercontig	sc0001459:8196..10906 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.72655	3.49681	1.67128	1.80284	12.4463	9.67594	13.5843	15.3754	5.63189	12.4856	7.57278	5.0627	6.64111	4.08201	4.58462	5.57238	6.41912	9.9021	4.59147	6.49199	5.0314	4.66761	3.91857	2.66805	10.1975	12.0884	3.93829	1.99676	4.40873	4.2041

Blast

[Close]

BLAST of TCONS_00036427 vs. Swiss-Prot (Human)
Match: EXOC2 (Exocyst complex component 2 OS=Homo sapiens GN=EXOC2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.676e-41
Identity = 80/193 (41.45%), Postives = 125/193 (64.77%), Query Frame = 1

Query:    1 SEEFSAARFLLERHLDTGFDALKSGYYHLQSKDTRKSVGPTSFVRGHLSTILEALHTLNEVSEMHTVNESESNGGNICEELQGVLKSCDFVSHSLFKDILQRKDDCDAKRNVLNVLHRYRFLFNLPRSIEKSIQQREYEILISDYNRAKALFQNTEVTSFKKALAEVDQKISAFSTQLKQKLFDFPTPLEEQK 579
            SE FSAA +L+E H +T F+ LK    +L+ +  +KS G  ++V+G LST  EA   L+ + +    + +E   G++ ++L+ VL      + +LF+++L RKD  D+ RN LNVL R++FLFNLP +IE++IQ+ +Y+++I+DY +AK+LF  TEV  FKK  AEV+ +I A    L  KL + P+ L +QK
Sbjct:  162 SENFSAAWYLIENHSNTSFEQLKMAVTNLKRQANKKSEGSLAYVKGGLSTFFEAQDALSAIHQKLEADGTEKVEGSMTQKLENVLNRASNTADTLFQEVLGRKDKADSTRNALNVLQRFKFLFNLPLNIERNIQKGDYDVVINDYEKAKSLFGKTEVQVFKKYYAEVETRIEALRELLLDKLLETPSTLHDQK 354

The following BLAST results are available for this feature:

BLAST of TCONS_00036427 vs. Swiss-Prot (Human)

BLAST of TCONS_00036427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EXOC2	2.676e-41	41.45	Exocyst complex component 2 OS=Homo sapiens GN=EXO...	[more]

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TCONS_00036427 (transcript) - C. hemisphaerica