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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036425 ID=TCONS_00036425|Name=TCONS_00036425|organism=Clytia hemisphaerica|type=transcript|length=1810bp
AGATTCTCTACATGTACGAATCCTTTTTAAAATGGTTTCTACGGATAGAA
CGGGATCTTTACCAGCTTTAGCCAAACTTTGTTATTGCTCAGCACACGCA
ATTTTTTTGTCGACACAAAAAAGTTGACGACAGACAGAACGAAAAAAAGC
AAGAAATCTAGGCATTTTCATCAGATTAAAAGTAAAGAGAACTATTATTT
TATCAGTTTGAAAGATGACTAATAATGGAGTCGACTGAAGAAGCAGCTAA
TCATCAAATGAAAGAACAAAAATCGTCAACTAGTCGTCGAGGGGGATATG
CAAGAGCAATCAAACGatggaCATTGGATCGTTTTGTGTTGGCCCATTTC
TTTGTGGTCTTTCTTGTCAGCTTTGTCATAGGAATCCTCTTCATGCATTC
AACATTCATATTTGGTGAACAGGTCGAAGAAGTAGAACTAGAACAAGTTC
TCAATGATTTGGGAGTGGATCAAACTGCAAACTATGTTCAAATGGACACT
GTGGAATATAAACAAACTCTCCCAGTCAACTGTTCATCTGGGATAAATAC
TTCCTTATGGTAAAATACAAATGTATTATTGGTGTTAAATGTTGGTGTGT
GTGTTCTTACGGGAAAATGAGCAATAAAGTATAGCCCGGGGTTAGAGACA
AATCTTCTACATAGTAATTGAAGTATTTTTGCATAAGTTGTGCAGCCAAC
GTGATTTCATACAAATGCTTCATTGAAATTAATNTTATTgcaagatttcg
aaaaaaaatgctctaaaagCAAAAGAGgcactagattcaatccgtaaTCC
CAGTTGAGGCGCAGATCCTAAGGTATCAGTTTTTCTTGAAGCATGAAGAT
TTGTCTCTAGTCTCATCCGGTTATATCTTATTGGAAAAGAGGGTGTTTGT
TGTTTTAGCCAAAGTATTTAAGAGGCTTCGAAATAAAGACTATGTTCGAT
GTGAGGTGCTCACAGAAGTTATTTCCCTGGTATATATTATACTggatatg
atttcttttttcctttgaGTGCTTCTTAAAACTAGAAACATAATTATACT
CCTTTTTCGAGACAAAGGTTGAACCTAGACTATATAATAGTCGAGTCTAT
TATGATTTGGAGCTTCATTCTTTTACATAATAATAGTTCTTATCTTATTG
GGGTTGAAGAGATGGGTCATTTCTCAATGAAAAACCCCACCCCAAAATTG
GCCTTGGTGCTTAAAAATTCTTTTACCGTCAAGCTCATActtaatgggat
taatttttgcggggaCTAAATTTCGCTTCGgttgtcatccgcgaaaataa
gtcccaattttaaaaatatttgcaGAAGTCTAATTTAGTAGGTATTTTTA
CTTGCTTTCCCTCTGGCGATCAGGCACCACCCCCTCCCGTTTATTAACAT
GTGAAAGTTAATTGCACCGTCAAGACTTTGTATGCTTTTAGTAACGAAAA
GTTTTAATAgtttgggacgagatggagtttttgcGAGCTTTTATTTGGGG
GCGTatggtatttcggaattgctgaaattgacccttttttcttcggaatt
tcgcaaatttggcaaaattccttcggtatttcggaatgctgatcttgttt
cggtatcggaaatccatgaatatTTGCTTCGGAATTTGGGTATtatactc
tcgggtgcctaataaacgtacatgtacgtttatttttttcgtgtcaAATT
TCCCGTCTGTacgttatctgatattccgatggcgtattggcggccgccca
cgctaaagctctaaaggagcgggccaatataccatcggagagaaatagta
gtCATCCATT Run BLAST on NCBI protein sequence of TCONS_00036425-protein >TCONS_00036425-protein ID=TCONS_00036425-protein|Name=TCONS_00036425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MESTEEAANHQMKEQKSSTSRRGGYARAIKRWTLDRFVLAHFFVVFLVSF
VIGILFMHSTFIFGEQVEEVELEQVLNDLGVDQTANYVQMDTVEYKQTLP
VNCSSGINTSLW Run BLAST on NCBI transcript from alignment at sc0001459:22555..29877+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036425 ID=TCONS_00036425|Name=TCONS_00036425|organism=Clytia hemisphaerica|type=transcript|length=7323bp|location=Sequence derived from alignment at sc0001459:22555..29877+ (Clytia hemisphaerica)
AGATTCTCTACATGTACGAATCCTTTTTAAAATGGTTTCTACGGATAGAA
CGGGATCTTTACCAGCTTTAGCCAAACTTTGTTATTGCTCAGCACACGCA
ATTTTTTTGTCGACACAAAAAAGTTGACGACAGACAGAACGAAAAAAAGC
AAGAAATCTAGGCATTTTCATCAGATTAAAAGTAAAGAGAACTATTATTT
TATCAGTTTGAAAGATGACTAATAATGGAGTCGACTGAAGAAGCAGCTAA
TCATCAAATGAAAGAACAAAAATCGTCAACTAGTCGTCGAGGGGGATATG
CAAGAGCAATCAAACGatggtaaaataaaaagattttttagtattttccc
ATCTGACAAATTACATGTATTTTCTTCACCTAAGTAAAGTTATAAGCAAT
GAAACTTCTCAATTTAATCCCTTCTTGCAGTTAGTGGAAGCTTTTCAATT
TGCGAAGCGTCCTTAGGTCAcacagaacaaaagaaaatagcaaggTGCTG
TGGCGGGTatgtggtcattgaccttggttgctgcataGGTGACTGAGGTT
CAATTCCTActtgcagcggttcacttggcaagtaagtgaacctttgcccg
ggtcaacccatgccatgtccatgtgaggggaattgcgtagtcagtccaag
gtgctgccGGGGcactcattgaaagcgtctatagttgcaaaaatatagcc
agacagtgtcaatcgaacaacttcgaacaaaattcgcaatcgaaccaatc
aaacataatcgaacgcgaacgaataattgcgatttgattgtcgaacgtaa
tcgaatctcaatcgaacggccgattcctgggtaatattcgattgtgttcg
attgtgttcgagtaaggttagattggtttggttttatagttgactatgtt
cgattggttcgattgattgttaattacattggattaatcttcgattttgt
tcgattacgatttatgttcaatgagtttgattgcgattaaattaaattgg
atcactctgttagagctttttagcatgggcggccgagcgcttaagtacca
tactaaagcgaataaaatctaatacaattaaatcaatcgaacgtaatcga
atagaccttttcgcctttccatccgccatcttgaattgtatgcaaaaata
taggaacgaaaaagccgtggttggatctagttggaaaatatgcaaataaa
acatatgcaagtttacacaaagattaaaaagacaacaaagcaccttataa
ataaattttataatcattagaacaataaaagatggaatttcttaatccaa
aaagaaatatttaccgaacaacaaaagccttttaggaatttgttcttaaa
gacattgcatattctgttttcatgccattaaaaaattccacgaagacgga
gtacacacattaactttcaaaacacgcaaactgaaagcaataattatgac
gtcacgcattcagcgggttcagatcgatgttttgatttgatcgtttgggg
gttctattcccaggagaataatttaccgtcagccgaataaggattatttt
tgtaccttcgtgggtgatttttcagcttgagtttatgtctaatgttatag
ttttttgaagtgcttgttctaagaagtgggcaaatttgattatttctagt
tttcaaaagaagcaaattttaatctttcttctacaagattacactttaat
ataatgctaattatgcatgtaagttttatattaatactttctttttgcat
atgttttgcatactttctaagggaatttcatcacggcaattcggccacca
taatttttgcatacaattcaatatggcggatggaaaggcgaaaaggtcta
tacaatcgaacttaattgaagcaatcgaacagtaaatcctgggtaatatt
cgattgcgattcgattgcgttcgacaatggaattgcaattattcgattgc
gttcaattgcgttcgattgattcagcgttcgattcgttcgattgacaccg
tctggatataggcctcaaagccttgGCTCCTGCAACTCCAGTTTTCAGAT
CGTGGCACAGAGCTGCCCCTGAGATAtttggtgaaggcttcttcacaaag
acgaaagacatgtatctatttttcggatccggtatgcgggaatagtgtca
gaacctgcaggcgacctggtagggttgggtatgggtgtggtttgggtgtg
gttatgtatcagattggctaggaatcgggttattatcagttagggttaga
gttcgagctcgaaacaagcactctaaataacaaaggaattacccatagct
accattttgcaaccatggggaatcgcGATTTTACAGAGGGAATCCTCATA
TcgaataaagcatcttctgaaagTAGGCGGTCATCAAAATAATGCTCCGT
TtgcgtcgcaacgggtgttaaaaatgcataaGGGCAGACACGCGGTTGAA
AAAATTCCTGGGTTTTTAAATCACGCCAGTAATTCgggggcgggtggtaa
cgcgaacaaaacaattttttgatggccGCCTGCCAGAGCAATTgaaaaaa
agctatactttaaaagaacaaattgtttttcccagatttttttcagcCTC
TCCGTACcggaaaatcaacaaaaaatatgatGTGGGCGGGTGaggcgaat
agaacaatttttcgatggccgcctAAAGTTTCGTCCGTCCCCATAaatgt
gaaaatgaaattaacaaagaaactttcgttttctaatggtctttttaatt
tgttataaaattccttattaAATGATACAGTCTCCTACTAagaggtttaa
aaaatgagGTAGAAACAAGAAACTGTAAAAATCGATTACAAAACCTACCG
TCAACtgttctaacttgggacaattggtcgaaacatgggactgttgcata
tctggtctgtattttcactcactttaaaatcgaaagagaaatcgtgtatt
tttaaatacgcccttccttaactcaaatcaaatgacttttgaggtttggt
gaaatggtggtcgaattgccgtcccacgttttgtcagatagtcccaagtt
agagcagttgacggtatatcaCAACCACACGGAgtgctgacttttagttt
taatgactTGTTTGGTTTCCGTAATATGAAGAAAGTCGTattttgaactt
tgaacatgctttaAATGGAGTTATTTTCACtgtataccttaagtggataa
attttcgtgtttttcgcggattttggccattttcgcgaaatttagtccac
gcgaaNtcttaagtggataaattttcgtggttttcgcgaattttggccat
tttcgcgaaatttagtccacgcgaaaatttggAAGGCCTTTGATACGCAA
AAGTTAGTCAACGGGAAATCATTTGGAATTTTACAATCGCGAAAATAAAA
GTTCGCGAAATCTAGATAACATGTTATATACAATCAAAACATATTGTGAC
TTCAACTCTTCATTTCAATTATAAACTCTAGTAACCTCCTAAAAGTactt
tctttgaagttttttgaaggcttttgagtgactttgtctgcctttgttcg
attaaaaaacacatctcttttctagttacaatttatatagttgcgaaatt
aaataaagaaggccattttcgcaaaatttaatccacacgaaaattttaaa
gacccttgattcgcaaaatttaatccacgcaaaatctttaaattcgcgtc
tcgcgaaaataagtacacgcgaaaatttatccacttaggGTAACTAACTG
TCTTGATAGAATCTGCTGTAATTATGAAAATTTGCCttgtaaaatataaa
agtaagaaacatttttcttGTTGCTGAGCAAGTTAAAGCTCAATTAAACC
AGgcttagttaatcgatataatcgataatcgtgagtaatcgataaaaaat
cgataagtaatcgatggattagatatcgattacaCGATATAATCAATAGG
TAATCGAtctagattttttcaaagctcggTTATCTATCGATTATCTATAG
ATTAATTTTCTCAATGACTGTCTCTATCAATTATGTATCAATAAAACCCT
CGCATTCCCCAAACGACTATTGGATTCTTTGCTGCATTTGGTTGGGGTCG
TTTGGGTGACTTTTTCACCTAGCCAGGATTCTTTCTATCTCTGCTGAAAA
GTTGCAATATGACTCCTTGCGAAATTTAAtgtttgtcaaaattttttaaa
ctagTCTATTTGCTAAACTAAAGACCCTAGAATTTTGCAAAAACctttaa
aggaaaataaaagaagTTAGTTGAAAACAGGGGGTGACTCGCAGAAATAA
GTCCCCCAAGAATTAAattacttttgcaaaatttatCCATTTTAGGTATA
TTCAcctaatttattttttctaatacATCGTTTGGGACACAGTTCTTTTC
TCCTTTACTTGGCTGACCTCCAACAAGCCAAAGCGAATTATGACTTTTCC
TTGTCTGTAATGATTTTATAATTTAGGAGAAATTAAGTACAACCTTAtgt
gtatattttttatttataggaCATTGGATCGTTTTGTGTTGGCCCATTTC
TTTGTGGTCTTTCTTGTCAGCTTTGTCATAGGAATCCTCTTCATGCATTC
AACATTCATATTTGGTGAACAGGTAAGCAACATCAGTAGGTAGTAATgta
accatagtcattataaaaacactggtccggaaggcttttgtctcttttta
ttgttaaaagatggagcttacgtaccaaaatcgatttattttgcaaactt
tttaatcatgtgattagaaaatagaccaatcccaagagaaGATTGTgata
acgtgatcaaaaagtatgcaaattgcaacttgtcttttgttacaaacaaa
agacaattgaacaaaaagctaaaacaatacattgccagaccagtgttttt
attaTGACTATGATGTAACTTGCTGCTATTTTGGAGATCATGGCCATGAT
GGAATAGACCTCTTACCCTTTAAAAGTTAGATTAAAGAtttaatttttac
ataagtgttcccatttcatatcagacacatatttcatatcaggacagtgt
cttcctattgttatattatgctaatataagcaaatatgtgaattaaaatt
gatgagtgagcaaacgatatcattcttatttaaaaacaaaacctttaaat
cgagttttttctaacacaaacaaacacaaatattcattattttatattca
aaattacattctcttttttaatgaaagaattcttttttcattgtttgcaT
TGGAACTAAAATCTGTAGAAGTCATGAAGTGGTTAAAGGCTTATGATGGT
AGTAAATGTGAATACTGCGTAAACCATGTGTCATAAAATTAAACAATTTN
AAGTCATGAAGTGGTTAAAGGCCTATGATGGTAGTAAATGTGAATACTGC
GTAAACCATGTGTCATAAAATTAAACAATTTAAATTAGAAcgatttgaat
gattttttcattttgctttttgcttttaaccccggggggtactagggttg
cgagttGGCAGGGGTGCTGCTTGACTTTCGACGCTTCAACCCTTACCCGG
ACTAAAAAGGAgagaacaaaggaaaattttgtgaattttacgaaccttat
cgggacaaatttgaccaaatttgaccAAACTTCTATCTTTCCggggtaaa
aagttaaaattttctatttcttcaacccttagtgggactaaaatttgatt
ttctgatttttccgacccttagtagGACTTTGGagatccaaaaaaggtac
ccttaagggcggcacataccgtaccctccctttgcctaagtacccccagg
ctttaacatttcttttgattttatattATACTATGTATATATgtagtttt
tgttttaatttgcaACTATGTTTATGTGATTTTAAAAATGTAAGATCGAT
AAATTTCATACctgttttgcttgtttttgcAATAGGTCGAAGAAGTAGAA
CTAGAACAAGTTCTCAATGATTTGGGAGTGGATCAAACTGCAAACTATGT
TCAAATGGACACTGTGGAATATAAACAAACTCTCCCAGTCAACTGTTCAT
CTGGGATAAATACTTCCTTATGGTAAAATACAAATGTATTATTGGTGTTA
AATGTTGGTGTGTGTGTTCTTACGGGAAAATGAGCAATAAAGTATAGCCC
GGGGTTAGAGACAAATCTTCTACATAGTAATTGAAGTATTTTTGCATAAG
TTGTGCAGCCAACGTGATTTCATACAAATGCTTCATTGAAATTAATNTTA
TTgcaagatttcgaaaaaaaatgctctaaaagCAAAAGAGgcactagatt
caatccgtaaTCCCAGTTGAGGCGCAGATCCTAAGGTATCAGTTTTTCTT
GAAGCATGAAGATTTGTCTCTAGTCTCATCCGGTTATATCTTATTGGAAA
AGAGGGTGTTTGTTGTTTTAGCCAAAGTATTTAAGAGGCTTCGAAATAAA
GACTATGTTCGATGTGAGGTGCTCACAGAAGTTATTTCCCTGGTATATAT
TATACTggatatgatttcttttttcctttgaGTGCTTCTTAAAACTAGAA
ACATAATTATACTCCTTTTTCGAGACAAAGGTTGAACCTAGACTATATAA
TAGTCGAGTCTATTATGATTTGGAGCTTCATTCTTTTACATAATAATAGT
TCTTATCTTATTGGGGTTGAAGAGATGGGTCATTTCTCAATGAAAAACCC
CACCCCAAAATTGGCCTTGGTGCTTAAAAATTCTTTTACCGTCAAGCTCA
TActtaatgggattaatttttgcggggaCTAAATTTCGCTTCGgttgtca
tccgcgaaaataagtcccaattttaaaaatatttgcaGAAGTCTAATTTA
GTAGGTATTTTTACTTGCTTTCCCTCTGGCGATCAGGCACCACCCCCTCC
CGTTTATTAACATGTGAAAGTTAATTGCACCGTCAAGACTTTGTATGCTT
TTAGTAACGAAAAGTTTTAATAgtttgggacgagatggagtttttgcGAG
CTTTTATTTGGGGGCGTatggtatttcggaattgctgaaattgacccttt
tttcttcggaatttcgcaaatttggcaaaattccttcggtatttcggaat
gctgatcttgtttcggtatcggaaatccatgaatatTTGCTTCGGAATTT
GGGTATtatactctcgggtgcctaataaacgtacatgtacgtttattttt
ttcgtgtcaAATTTCCCGTCTGTacgttatctgatattccgatggcgtat
tggcggccgcccacgctaaagctctaaaggagcgggccaatataccatcg
gagagaaatagtagtCATCCATT Coding sequence (CDS) from alignment at sc0001459:22555..29877+ >TCONS_00036425 ID=TCONS_00036425|Name=TCONS_00036425|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at sc0001459:22555..29877+ (Clytia hemisphaerica)
ATGGAGTCGACTGAAGAAGCAGCTAATCATCAAATGAAAGAACAAAAATC
GTCAACTAGTCGTCGAGGGGGATATGCAAGAGCAATCAAACGatggaCAT
TGGATCGTTTTGTGTTGGCCCATTTCTTTGTGGTCTTTCTTGTCAGCTTT
GTCATAGGAATCCTCTTCATGCATTCAACATTCATATTTGGTGAACAGGT
CGAAGAAGTAGAACTAGAACAAGTTCTCAATGATTTGGGAGTGGATCAAA
CTGCAAACTATGTTCAAATGGACACTGTGGAATATAAACAAACTCTCCCA
GTCAACTGTTCATCTGGGATAAATACTTCCTTATGGTAAATGGAGTCGAC
TGAAGAAGCAGCTAATCATCAAATGAAAGAACAAAAATCGTCAACTAGTC
GTCGAGGGGGATATGCAAGAGCAATCAAACGatggaCATTGGATCGTTTT
GTGTTGGCCCATTTCTTTGTGGTCTTTCTTGTCAGCTTTGTCATAGGAAT
CCTCTTCATGCATTCAACATTCATATTTGGTGAACAGGTCGAAGAAGTAG
AACTAGAACAAGTTCTCAATGATTTGGGAGTGGATCAAACTGCAAACTAT
GTTCAAATGGACACTGTGGAATATAAACAAACTCTCCCAGTCAACTGTTC
ATCTGGGATAAATACTTCCTTATGGTAAATGGAGTCGACTGAAGAAGCAG
CTAATCATCAAATGAAAGAACAAAAATCGTCAACTAGTCGTCGAGGGGGA
TATGCAAGAGCAATCAAACGatggaCATTGGATCGTTTTGTGTTGGCCCA
TTTCTTTGTGGTCTTTCTTGTCAGCTTTGTCATAGGAATCCTCTTCATGC
ATTCAACATTCATATTTGGTGAACAGGTCGAAGAAGTAGAACTAGAACAA
GTTCTCAATGATTTGGGAGTGGATCAAACTGCAAACTATGTTCAAATGGA
CACTGTGGAATATAAACAAACTCTCCCAGTCAACTGTTCATCTGGGATAA
ATACTTCCTTATGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036425-exon-sc0001459-1491911889:22555..22873 | TCONS_00036425-exon-sc0001459-1491911889:22555..22873 | Clytia hemisphaerica | exon |
| TCONS_00036425-exon-sc0001459-1510915933:22555..22873 | TCONS_00036425-exon-sc0001459-1510915933:22555..22873 | Clytia hemisphaerica | exon |
| TCONS_00036425-exon-sc0001459-1575043694:22555..22873 | TCONS_00036425-exon-sc0001459-1575043694:22555..22873 | Clytia hemisphaerica | exon |
| TCONS_00036425-exon-sc0001459-1491911889:27074..27176 | TCONS_00036425-exon-sc0001459-1491911889:27074..27176 | Clytia hemisphaerica | exon |
| TCONS_00036425-exon-sc0001459-1510915933:27074..27176 | TCONS_00036425-exon-sc0001459-1510915933:27074..27176 | Clytia hemisphaerica | exon |
| TCONS_00036425-exon-sc0001459-1575043694:27074..27176 | TCONS_00036425-exon-sc0001459-1575043694:27074..27176 | Clytia hemisphaerica | exon |
| TCONS_00036425-exon-sc0001459-1491911889:28490..29877 | TCONS_00036425-exon-sc0001459-1491911889:28490..29877 | Clytia hemisphaerica | exon |
| TCONS_00036425-exon-sc0001459-1510915933:28490..29877 | TCONS_00036425-exon-sc0001459-1510915933:28490..29877 | Clytia hemisphaerica | exon |
| TCONS_00036425-exon-sc0001459-1575043694:28490..29877 | TCONS_00036425-exon-sc0001459-1575043694:28490..29877 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001459 | supercontig | sc0001459:22555..29877 + |
Blast
The following BLAST results are available for this feature:
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