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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036424 ID=TCONS_00036424|Name=TCONS_00036424|organism=Clytia hemisphaerica|type=transcript|length=965bp
ACTTGTGTTATCGTAAAGGTCAAAATATTTGAGGCATGATCGTTGCACTC
TGATGTCAATTTGAGGTCCACTTATAGGACGACTTTAATGTGAAAAATGG
TTAAACACTTGAGATCGGGAGTCTTTAAAGTACTTTAgtatcaaaaagtt
tcttgaaccAAATTTTAatcgaaagtttttttcttcgtCATATTTAAAGG
TTGTTAGGAATTTTCCCGCATTCAAAGCATTatctacaatttttttcaat
taaagtACTCTGTGAACATTGGCAGGTAAAGCGAGCATACTCTAGATTCG
ATATTTGAGTGAGACCttatacaaaaatatttgttttgcgCTTAATACTT
ACAGCTTAATTTTAACACCATAGGTACCTGGATTAATGAAATCTGCATTG
NAGAAATATTTGTTTTGTGCTTAATACTTACAGCTTAATTTTAACACCAT
AGGTACCTGGATTAATGAAATCTGCATTGAAAATTCTGTTGTCTCCAACA
TCGGAACCTTCAGACATTCAGAATTTTCTTCCTGTGAGACTTATGGCAAT
CAAGCAAGTTTCAGATGATGCCAAGGTTAAATGTGAAGAGGTCGTGAAAG
AACTTATGCATGTCATTGAAGTCACTGACGAAGTCTTTATGGGGTTGGTT
GTCAAACAGATCGATGTAAAAACTGCTCTAGAGCAACTAGAACTCAATAT
TGCTAATACTAAGAGAGAAATCAAAAGATCGGACCAGGTTACAAAAGCAA
ACGAAAAGGCATTAAAAGACATGGAAGGGCAAGTCAAGAGTGCAAAGGAA
GATTGGAAAGATGCAATGGCTTCTATGCCAAGTGCTCAAGATTTGATGAT
GGCATCTGTGACTGAAAGCTTGACAAGCATCGTTAACACTGGAGCAAATG
CTGCCATTCAAATGGGAACCCAATATGTAAACATGATGACAATGAGCGCC
ATGGGCGGAATGGNN Run BLAST on NCBI protein sequence of TCONS_00036424-protein >TCONS_00036424-protein ID=TCONS_00036424-protein|Name=TCONS_00036424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MKSALKILLSPTSEPSDIQNFLPVRLMAIKQVSDDAKVKCEEVVKELMHV
IEVTDEVFMGLVVKQIDVKTALEQLELNIANTKREIKRSDQVTKANEKAL
KDMEGQVKSAKEDWKDAMASMPSAQDLMMASVTESLTSIVNTGANAAIQM
GTQYVNMMTMSAMGGMX Run BLAST on NCBI transcript from alignment at sc0001458:38852..39816 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036424 ID=TCONS_00036424|Name=TCONS_00036424|organism=Clytia hemisphaerica|type=transcript|length=965bp|location=Sequence derived from alignment at sc0001458:38852..39816 (Clytia hemisphaerica)
NNCCATTCCGCCCATGGCGCTCATTGTCATCATGTTTACATATTGGGTTC
CCATTTGAATGGCAGCATTTGCTCCAGTGTTAACGATGCTTGTCAAGCTT
TCAGTCACAGATGCCATCATCAAATCTTGAGCACTTGGCATAGAAGCCAT
TGCATCTTTCCAATCTTCCTTTGCACTCTTGACTTGCCCTTCCATGTCTT
TTAATGCCTTTTCGTTTGCTTTTGTAACCTGGTCCGATCTTTTGATTTCT
CTCTTAGTATTAGCAATATTGAGTTCTAGTTGCTCTAGAGCAGTTTTTAC
ATCGATCTGTTTGACAACCAACCCCATAAAGACTTCGTCAGTGACTTCAA
TGACATGCATAAGTTCTTTCACGACCTCTTCACATTTAACCTTGGCATCA
TCTGAAACTTGCTTGATTGCCATAAGTCTCACAGGAAGAAAATTCTGAAT
GTCTGAAGGTTCCGATGTTGGAGACAACAGAATTTTCAATGCAGATTTCA
TTAATCCAGGTACCTATGGTGTTAAAATTAAGCTGTAAGTATTAAGCACA
AAACAAATATTTCTNCAATGCAGATTTCATTAATCCAGGTACCTATGGTG
TTAAAATTAAGCTGTAAGTATTAAGcgcaaaacaaatatttttgtataaG
GTCTCACTCAAATATCGAATCTAGAGTATGCTCGCTTTACCTGCCAATGT
TCACAGAGTactttaattgaaaaaaattgtagatAATGCTTTGAATGCGG
GAAAATTCCTAACAACCTTTAAATATGacgaagaaaaaaactttcgatTA
AAATTTggttcaagaaactttttgatacTAAAGTACTTTAAAGACTCCCG
ATCTCAAGTGTTTAACCATTTTTCACATTAAAGTCGTCCTATAAGTGGAC
CTCAAATTGACATCAGAGTGCAACGATCATGCCTCAAATATTTTGACCTT
TACGATAACACAAGT Coding sequence (CDS) from alignment at sc0001458:38852..39816 >TCONS_00036424 ID=TCONS_00036424|Name=TCONS_00036424|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0001458:38852..39816 (Clytia hemisphaerica)
NNCCATTCCGCCCATGGCGCTCATTGTCATCATGTTTACATATTGGGTTC
CCATTTGAATGGCAGCATTTGCTCCAGTGTTAACGATGCTTGTCAAGCTT
TCAGTCACAGATGCCATCATCAAATCTTGAGCACTTGGCATAGAAGCCAT
TGCATCTTTCCAATCTTCCTTTGCACTCTTGACTTGCCCTTCCATGTCTT
TTAATGCCTTTTCGTTTGCTTTTGTAACCTGGTCCGATCTTTTGATTTCT
CTCTTAGTATTAGCAATATTGAGTTCTAGTTGCTCTAGAGCAGTTTTTAC
ATCGATCTGTTTGACAACCAACCCCATAAAGACTTCGTCAGTGACTTCAA
TGACATGCATAAGTTCTTTCACGACCTCTTCACATTTAACCTTGGCATCA
TCTGAAACTTGCTTGATTGCCATAAGTCTCACAGGAAGAAAATTCTGAAT
GTCTGAAGGTTCCGATGTTGGAGACAACAGAATTTTCAATGCAGATTTCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036424-exon-sc0001458-1491911889:38852..39816 | TCONS_00036424-exon-sc0001458-1491911889:38852..39816 | Clytia hemisphaerica | exon |
| TCONS_00036424-exon-sc0001458-1510915933:38852..39816 | TCONS_00036424-exon-sc0001458-1510915933:38852..39816 | Clytia hemisphaerica | exon |
| TCONS_00036424-exon-sc0001458-1575043694:38852..39816 | TCONS_00036424-exon-sc0001458-1575043694:38852..39816 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001458 | supercontig | sc0001458:38852..39816 . |
Blast
The following BLAST results are available for this feature:
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